Published in: Dagstuhl Seminar Proceedings, Volume 5471, Computational Proteomics (2006)
Marc Sturm, Sascha Quinten, Christian G. Huber, and Oliver Kohlbacher. A machine learning approach for prediction of DNA and peptide HPLC retention times. In Computational Proteomics. Dagstuhl Seminar Proceedings, Volume 5471, pp. 1-5, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2006)
@InProceedings{sturm_et_al:DagSemProc.05471.3, author = {Sturm, Marc and Quinten, Sascha and Huber, Christian G. and Kohlbacher, Oliver}, title = {{A machine learning approach for prediction of DNA and peptide HPLC retention times}}, booktitle = {Computational Proteomics}, pages = {1--5}, series = {Dagstuhl Seminar Proceedings (DagSemProc)}, ISSN = {1862-4405}, year = {2006}, volume = {5471}, editor = {Christian G. Huber and Oliver Kohlbacher and Knut Reinert}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.05471.3}, URN = {urn:nbn:de:0030-drops-5484}, doi = {10.4230/DagSemProc.05471.3}, annote = {Keywords: High performance liquid chromatography, mass spectrometry, retention time, prediction, peptide, DNA, support vector regression} }
Published in: Dagstuhl Seminar Proceedings, Volume 5471, Computational Proteomics (2006)
Knut Reinert, Oliver Kohlbacher, Clemens Gröpl, Eva Lange, Ole Schulz-Trieglaff, Marc Sturm, and Nico Pfeifer. OpenMS - A Framework for Quantitative HPLC/MS-Based Proteomics. In Computational Proteomics. Dagstuhl Seminar Proceedings, Volume 5471, pp. 1-7, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2006)
@InProceedings{reinert_et_al:DagSemProc.05471.13, author = {Reinert, Knut and Kohlbacher, Oliver and Gr\"{o}pl, Clemens and Lange, Eva and Schulz-Trieglaff, Ole and Sturm, Marc and Pfeifer, Nico}, title = {{OpenMS - A Framework for Quantitative HPLC/MS-Based Proteomics}}, booktitle = {Computational Proteomics}, pages = {1--7}, series = {Dagstuhl Seminar Proceedings (DagSemProc)}, ISSN = {1862-4405}, year = {2006}, volume = {5471}, editor = {Christian G. Huber and Oliver Kohlbacher and Knut Reinert}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.05471.13}, URN = {urn:nbn:de:0030-drops-5463}, doi = {10.4230/DagSemProc.05471.13}, annote = {Keywords: Proteomics, C++, Differential expression} }
Published in: Dagstuhl Seminar Proceedings, Volume 5471, Computational Proteomics (2006)
Christian G. Huber, Oliver Kohlbacher, and Knut Reinert. 05471 Abstract Collection – Computational Proteomics. In Computational Proteomics. Dagstuhl Seminar Proceedings, Volume 5471, pp. 1-15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2006)
@InProceedings{huber_et_al:DagSemProc.05471.1, author = {Huber, Christian G. and Kohlbacher, Oliver and Reinert, Knut}, title = {{05471 Abstract Collection – Computational Proteomics}}, booktitle = {Computational Proteomics}, pages = {1--15}, series = {Dagstuhl Seminar Proceedings (DagSemProc)}, ISSN = {1862-4405}, year = {2006}, volume = {5471}, editor = {Christian G. Huber and Oliver Kohlbacher and Knut Reinert}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.05471.1}, URN = {urn:nbn:de:0030-drops-5569}, doi = {10.4230/DagSemProc.05471.1}, annote = {Keywords: Proteomics, mass spectrometry, MALDI, HPLC-MS, differential expression, clinical proteomics, quantitation, identification} }
Published in: Dagstuhl Seminar Proceedings, Volume 5471, Computational Proteomics (2006)
Christian G. Huber, Oliver Kohlbacher, and Knut Reinert. 05471 Executive Summary – Computational Proteomics. In Computational Proteomics. Dagstuhl Seminar Proceedings, Volume 5471, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2006)
@InProceedings{huber_et_al:DagSemProc.05471.2, author = {Huber, Christian G. and Kohlbacher, Oliver and Reinert, Knut}, title = {{05471 Executive Summary – Computational Proteomics}}, booktitle = {Computational Proteomics}, series = {Dagstuhl Seminar Proceedings (DagSemProc)}, ISSN = {1862-4405}, year = {2006}, volume = {5471}, editor = {Christian G. Huber and Oliver Kohlbacher and Knut Reinert}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.05471.2}, URN = {urn:nbn:de:0030-drops-5406}, doi = {10.4230/DagSemProc.05471.2}, annote = {Keywords: Proteomics, mass spectrometry, MALDI, HPLC-MS, differential expression, clinical proteomics, quantitation, identification} }
Published in: Dagstuhl Seminar Proceedings, Volume 5471, Computational Proteomics (2006)
Clemens Gröpl. An Algorithm for Feature Finding in LC/MS Raw Data. In Computational Proteomics. Dagstuhl Seminar Proceedings, Volume 5471, pp. 1-9, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2006)
@InProceedings{gropl:DagSemProc.05471.4, author = {Gr\"{o}pl, Clemens}, title = {{An Algorithm for Feature Finding in LC/MS Raw Data}}, booktitle = {Computational Proteomics}, pages = {1--9}, series = {Dagstuhl Seminar Proceedings (DagSemProc)}, ISSN = {1862-4405}, year = {2006}, volume = {5471}, editor = {Christian G. Huber and Oliver Kohlbacher and Knut Reinert}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.05471.4}, URN = {urn:nbn:de:0030-drops-5341}, doi = {10.4230/DagSemProc.05471.4}, annote = {Keywords: Computational Proteomics, Quantitative Analysis, Liquid Chromatography, Mass Spectrometry, Algorithm, Software} }
Published in: Dagstuhl Seminar Proceedings, Volume 5471, Computational Proteomics (2006)
Sebastian Böcker and Veli Mäkinen. Combinatorial Approaches for Mass Spectra Recalibration. In Computational Proteomics. Dagstuhl Seminar Proceedings, Volume 5471, pp. 1-6, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2006)
@InProceedings{bocker_et_al:DagSemProc.05471.5, author = {B\"{o}cker, Sebastian and M\"{a}kinen, Veli}, title = {{Combinatorial Approaches for Mass Spectra Recalibration}}, booktitle = {Computational Proteomics}, pages = {1--6}, series = {Dagstuhl Seminar Proceedings (DagSemProc)}, ISSN = {1862-4405}, year = {2006}, volume = {5471}, editor = {Christian G. Huber and Oliver Kohlbacher and Knut Reinert}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.05471.5}, URN = {urn:nbn:de:0030-drops-5455}, doi = {10.4230/DagSemProc.05471.5}, annote = {Keywords: Mass spectrometry recalibration computational geometry} }
Published in: Dagstuhl Seminar Proceedings, Volume 5471, Computational Proteomics (2006)
Nathanaël Delmotte, Bettina Mayr, Andreas Leinenbach, Knut Reinert, Oliver Kohlbacher, Christoph Klein, and Christian G. Huber. Evaluation of LC-MS data for the absolute quantitative analysis of marker proteins. In Computational Proteomics. Dagstuhl Seminar Proceedings, Volume 5471, pp. 1-5, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2006)
@InProceedings{delmotte_et_al:DagSemProc.05471.6, author = {Delmotte, Nathana\"{e}l and Mayr, Bettina and Leinenbach, Andreas and Reinert, Knut and Kohlbacher, Oliver and Klein, Christoph and Huber, Christian G.}, title = {{Evaluation of LC-MS data for the absolute quantitative analysis of marker proteins}}, booktitle = {Computational Proteomics}, pages = {1--5}, series = {Dagstuhl Seminar Proceedings (DagSemProc)}, ISSN = {1862-4405}, year = {2006}, volume = {5471}, editor = {Christian G. Huber and Oliver Kohlbacher and Knut Reinert}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.05471.6}, URN = {urn:nbn:de:0030-drops-5397}, doi = {10.4230/DagSemProc.05471.6}, annote = {Keywords: RP-HPLC, monolith, Mascot, Myoglobin, Absolute quantitation, Serum} }
Published in: Dagstuhl Seminar Proceedings, Volume 5471, Computational Proteomics (2006)
Hartmut Schlüter. Future Challenges in Proteomics. In Computational Proteomics. Dagstuhl Seminar Proceedings, Volume 5471, pp. 1-5, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2006)
@InProceedings{schluter:DagSemProc.05471.7, author = {Schl\"{u}ter, Hartmut}, title = {{Future Challenges in Proteomics}}, booktitle = {Computational Proteomics}, pages = {1--5}, series = {Dagstuhl Seminar Proceedings (DagSemProc)}, ISSN = {1862-4405}, year = {2006}, volume = {5471}, editor = {Christian G. Huber and Oliver Kohlbacher and Knut Reinert}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.05471.7}, URN = {urn:nbn:de:0030-drops-5449}, doi = {10.4230/DagSemProc.05471.7}, annote = {Keywords: Protein species, proteome, identification} }
Published in: Dagstuhl Seminar Proceedings, Volume 5471, Computational Proteomics (2006)
Hansjörg Toll, Peter Berger, Andreas Hofmann, Andreas Hildebrandt, Herbert Oberacher, Hans Peter Lenhof, and Christian G. Huber. Glycosylation Patterns of Proteins Studied by Liquid Chromatography-Mass Spectrometry and Bioinformatic Tools. In Computational Proteomics. Dagstuhl Seminar Proceedings, Volume 5471, pp. 1-6, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2006)
@InProceedings{toll_et_al:DagSemProc.05471.8, author = {Toll, Hansj\"{o}rg and Berger, Peter and Hofmann, Andreas and Hildebrandt, Andreas and Oberacher, Herbert and Lenhof, Hans Peter and Huber, Christian G.}, title = {{Glycosylation Patterns of Proteins Studied by Liquid Chromatography-Mass Spectrometry and Bioinformatic Tools}}, booktitle = {Computational Proteomics}, pages = {1--6}, series = {Dagstuhl Seminar Proceedings (DagSemProc)}, ISSN = {1862-4405}, year = {2006}, volume = {5471}, editor = {Christian G. Huber and Oliver Kohlbacher and Knut Reinert}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.05471.8}, URN = {urn:nbn:de:0030-drops-5431}, doi = {10.4230/DagSemProc.05471.8}, annote = {Keywords: Liquid chromatography, mass spectrometry, glycoproteins, glycosylation, peak annotation} }
Published in: Dagstuhl Seminar Proceedings, Volume 5471, Computational Proteomics (2006)
Eva Lange, Clemens Gröpl, Oliver Kohlbacher, and Andreas Hildebrandt. High-accuracy peak picking of proteomics data. In Computational Proteomics. Dagstuhl Seminar Proceedings, Volume 5471, pp. 1-9, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2006)
@InProceedings{lange_et_al:DagSemProc.05471.9, author = {Lange, Eva and Gr\"{o}pl, Clemens and Kohlbacher, Oliver and Hildebrandt, Andreas}, title = {{High-accuracy peak picking of proteomics data}}, booktitle = {Computational Proteomics}, pages = {1--9}, series = {Dagstuhl Seminar Proceedings (DagSemProc)}, ISSN = {1862-4405}, year = {2006}, volume = {5471}, editor = {Christian G. Huber and Oliver Kohlbacher and Knut Reinert}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.05471.9}, URN = {urn:nbn:de:0030-drops-5358}, doi = {10.4230/DagSemProc.05471.9}, annote = {Keywords: Mass spectrometry, peak detection, peak picking} }
Published in: Dagstuhl Seminar Proceedings, Volume 5471, Computational Proteomics (2006)
Andreas Tholey. MALDI Mass Spectrometry for Quantitative Proteomics – Approaches, Scopes and Limitations. In Computational Proteomics. Dagstuhl Seminar Proceedings, Volume 5471, pp. 1-11, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2006)
@InProceedings{tholey:DagSemProc.05471.10, author = {Tholey, Andreas}, title = {{MALDI Mass Spectrometry for Quantitative Proteomics – Approaches, Scopes and Limitations}}, booktitle = {Computational Proteomics}, pages = {1--11}, series = {Dagstuhl Seminar Proceedings (DagSemProc)}, ISSN = {1862-4405}, year = {2006}, volume = {5471}, editor = {Christian G. Huber and Oliver Kohlbacher and Knut Reinert}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.05471.10}, URN = {urn:nbn:de:0030-drops-5367}, doi = {10.4230/DagSemProc.05471.10}, annote = {Keywords: MALDI, mass spectrometry, quantification, ionic liquid matrices} }
Published in: Dagstuhl Seminar Proceedings, Volume 5471, Computational Proteomics (2006)
Christian Schley, Matthias Altmeyer, Rolf Müller, and Christian G. Huber. MULTIDIMENSIONAL PEPTIDE/PROTEIN ANALYSIS AND IDENTIFICATION BY SEQUENCE DATABASE SEARCH USING MASS SPECTROMETRIC DATA. In Computational Proteomics. Dagstuhl Seminar Proceedings, Volume 5471, pp. 1-8, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2006)
@InProceedings{schley_et_al:DagSemProc.05471.11, author = {Schley, Christian and Altmeyer, Matthias and M\"{u}ller, Rolf and Huber, Christian G.}, title = {{MULTIDIMENSIONAL PEPTIDE/PROTEIN ANALYSIS AND IDENTIFICATION BY SEQUENCE DATABASE SEARCH USING MASS SPECTROMETRIC DATA}}, booktitle = {Computational Proteomics}, pages = {1--8}, series = {Dagstuhl Seminar Proceedings (DagSemProc)}, ISSN = {1862-4405}, year = {2006}, volume = {5471}, editor = {Christian G. Huber and Oliver Kohlbacher and Knut Reinert}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.05471.11}, URN = {urn:nbn:de:0030-drops-5389}, doi = {10.4230/DagSemProc.05471.11}, annote = {Keywords: Multidimensional chromatography, proteome analysis, monolithic column, tandem mass spectrometry} }
Published in: Dagstuhl Seminar Proceedings, Volume 5471, Computational Proteomics (2006)
Tim Conrad. New statistical algorithms for clinical proteomics. In Computational Proteomics. Dagstuhl Seminar Proceedings, Volume 5471, pp. 1-2, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2006)
@InProceedings{conrad:DagSemProc.05471.12, author = {Conrad, Tim}, title = {{New statistical algorithms for clinical proteomics}}, booktitle = {Computational Proteomics}, pages = {1--2}, series = {Dagstuhl Seminar Proceedings (DagSemProc)}, ISSN = {1862-4405}, year = {2006}, volume = {5471}, editor = {Christian G. Huber and Oliver Kohlbacher and Knut Reinert}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.05471.12}, URN = {urn:nbn:de:0030-drops-5427}, doi = {10.4230/DagSemProc.05471.12}, annote = {Keywords: MS, Mass Spectrometry, MALDI-TOF, Fingerprinting, Proteomics} }
Published in: Dagstuhl Seminar Proceedings, Volume 5471, Computational Proteomics (2006)
Ole Schulz-Trieglaff. Software platforms for quantitative proteomics. In Computational Proteomics. Dagstuhl Seminar Proceedings, Volume 5471, pp. 1-4, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2006)
@InProceedings{schulztrieglaff:DagSemProc.05471.14, author = {Schulz-Trieglaff, Ole}, title = {{Software platforms for quantitative proteomics}}, booktitle = {Computational Proteomics}, pages = {1--4}, series = {Dagstuhl Seminar Proceedings (DagSemProc)}, ISSN = {1862-4405}, year = {2006}, volume = {5471}, editor = {Christian G. Huber and Oliver Kohlbacher and Knut Reinert}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.05471.14}, URN = {urn:nbn:de:0030-drops-5376}, doi = {10.4230/DagSemProc.05471.14}, annote = {Keywords: Proteomics, mass spetrometry, quantitative measurements} }
Published in: Dagstuhl Seminar Proceedings, Volume 5471, Computational Proteomics (2006)
Wolf D. Lehmann, Junhua Wei, Juri Rappsilber, and Mojiborahman Salek. The Peptide MS/MS-Fragmentome: A Set of Predictable Fragment Ions with Highly Redundant Sequence Information. In Computational Proteomics. Dagstuhl Seminar Proceedings, Volume 5471, pp. 1-4, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2006)
@InProceedings{lehmann_et_al:DagSemProc.05471.15, author = {Lehmann, Wolf D. and Wei, Junhua and Rappsilber, Juri and Salek, Mojiborahman}, title = {{The Peptide MS/MS-Fragmentome: A Set of Predictable Fragment Ions with Highly Redundant Sequence Information}}, booktitle = {Computational Proteomics}, pages = {1--4}, series = {Dagstuhl Seminar Proceedings (DagSemProc)}, ISSN = {1862-4405}, year = {2006}, volume = {5471}, editor = {Christian G. Huber and Oliver Kohlbacher and Knut Reinert}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.05471.15}, URN = {urn:nbn:de:0030-drops-5472}, doi = {10.4230/DagSemProc.05471.15}, annote = {Keywords: Peptides, collision-induced dissociation, tandem mass spectrometry, electrospray, peptide fragment ions} }
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