Published in: Dagstuhl Reports, Volume 5, Issue 8 (2016)
Rudolf Aebersold, Oliver Kohlbacher, and Olga Vitek. Computational Mass Spectrometry (Dagstuhl Seminar 15351). In Dagstuhl Reports, Volume 5, Issue 8, pp. 9-33, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2016)
@Article{aebersold_et_al:DagRep.5.8.9, author = {Aebersold, Rudolf and Kohlbacher, Oliver and Vitek, Olga}, title = {{Computational Mass Spectrometry (Dagstuhl Seminar 15351)}}, pages = {9--33}, journal = {Dagstuhl Reports}, ISSN = {2192-5283}, year = {2016}, volume = {5}, number = {8}, editor = {Aebersold, Rudolf and Kohlbacher, Oliver and Vitek, Olga}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagRep.5.8.9}, URN = {urn:nbn:de:0030-drops-56765}, doi = {10.4230/DagRep.5.8.9}, annote = {Keywords: computational mass spectrometry, proteomics, metabolomics, bioinformatics} }
Published in: Dagstuhl Reports, Volume 3, Issue 12 (2014)
Ruedi Aebersbold, Oliver Kohlbacher, and Olga Vitek. Computational Mass Spectrometry (Dagstuhl Seminar 13491). In Dagstuhl Reports, Volume 3, Issue 12, pp. 1-16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2014)
@Article{aebersbold_et_al:DagRep.3.12.1, author = {Aebersbold, Ruedi and Kohlbacher, Oliver and Vitek, Olga}, title = {{Computational Mass Spectrometry (Dagstuhl Seminar 13491)}}, pages = {1--16}, journal = {Dagstuhl Reports}, ISSN = {2192-5283}, year = {2014}, volume = {3}, number = {12}, editor = {Aebersbold, Ruedi and Kohlbacher, Oliver and Vitek, Olga}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagRep.3.12.1}, URN = {urn:nbn:de:0030-drops-45053}, doi = {10.4230/DagRep.3.12.1}, annote = {Keywords: computational mass spectrometry, proteomics, metabolomics, bioinformatics} }
Published in: Dagstuhl Seminar Proceedings, Volume 8101, Computational Proteomics (2008)
Knut Reinert, Christian Huber, Kathrin Marcus, Michal Linial, and Oliver Kohlbacher. 08101 Abstracts Collection – Computational Proteomics. In Computational Proteomics. Dagstuhl Seminar Proceedings, Volume 8101, pp. 1-34, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2008)
@InProceedings{reinert_et_al:DagSemProc.08101.1, author = {Reinert, Knut and Huber, Christian and Marcus, Kathrin and Linial, Michal and Kohlbacher, Oliver}, title = {{08101 Abstracts Collection – Computational Proteomics}}, booktitle = {Computational Proteomics}, pages = {1--34}, series = {Dagstuhl Seminar Proceedings (DagSemProc)}, ISSN = {1862-4405}, year = {2008}, volume = {8101}, editor = {Christian Huber and Oliver Kohlbacher and Michal Linial and Katrin Marcus and Knut Reinert}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.08101.1}, URN = {urn:nbn:de:0030-drops-17840}, doi = {10.4230/DagSemProc.08101.1}, annote = {Keywords: Bioinformatics, biomedicine, proteomics, analytical chemistry} }
Published in: Dagstuhl Seminar Proceedings, Volume 8101, Computational Proteomics (2008)
Sebastian Böcker and Florian Rasche. Towards de novo identification of metabolites by analyzing tandem mass spectra. In Computational Proteomics. Dagstuhl Seminar Proceedings, Volume 8101, pp. 1-5, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2008)
@InProceedings{bocker_et_al:DagSemProc.08101.2, author = {B\"{o}cker, Sebastian and Rasche, Florian}, title = {{Towards de novo identification of metabolites by analyzing tandem mass spectra}}, booktitle = {Computational Proteomics}, pages = {1--5}, series = {Dagstuhl Seminar Proceedings (DagSemProc)}, ISSN = {1862-4405}, year = {2008}, volume = {8101}, editor = {Christian Huber and Oliver Kohlbacher and Michal Linial and Katrin Marcus and Knut Reinert}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.08101.2}, URN = {urn:nbn:de:0030-drops-17839}, doi = {10.4230/DagSemProc.08101.2}, annote = {Keywords: Tandem mass spectrometry, metabolomics, de novo interpretation} }
Published in: Dagstuhl Seminar Proceedings, Volume 8191, Graph Drawing with Applications to Bioinformatics and Social Sciences (2008)
Stephen Borgatti, Stephen Kobourov, Oliver Kohlbacher, and Petra Mutzel. 08191 Abstracts Collection – Graph Drawing with Applications to Bioinformatics and Social Sciences. In Graph Drawing with Applications to Bioinformatics and Social Sciences. Dagstuhl Seminar Proceedings, Volume 8191, pp. 1-10, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2008)
@InProceedings{borgatti_et_al:DagSemProc.08191.1, author = {Borgatti, Stephen and Kobourov, Stephen and Kohlbacher, Oliver and Mutzel, Petra}, title = {{08191 Abstracts Collection – Graph Drawing with Applications to Bioinformatics and Social Sciences}}, booktitle = {Graph Drawing with Applications to Bioinformatics and Social Sciences}, pages = {1--10}, series = {Dagstuhl Seminar Proceedings (DagSemProc)}, ISSN = {1862-4405}, year = {2008}, volume = {8191}, editor = {Stephen P. Borgatti and Stephen Kobourov and Oliver Kohlbacher and Petra Mutzel}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.08191.1}, URN = {urn:nbn:de:0030-drops-15547}, doi = {10.4230/DagSemProc.08191.1}, annote = {Keywords: Graph drawing, visualization, social sciences, bioinformatics} }
Published in: Dagstuhl Seminar Proceedings, Volume 8191, Graph Drawing with Applications to Bioinformatics and Social Sciences (2008)
Stephen Borgatti, Stephen Kobourov, Oliver Kohlbacher, and Petra Mutzel. 08191 Executive Summary – Graph Drawing with Applications to Bioinformatics and Social Sciences. In Graph Drawing with Applications to Bioinformatics and Social Sciences. Dagstuhl Seminar Proceedings, Volume 8191, pp. 1-3, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2008)
@InProceedings{borgatti_et_al:DagSemProc.08191.2, author = {Borgatti, Stephen and Kobourov, Stephen and Kohlbacher, Oliver and Mutzel, Petra}, title = {{08191 Executive Summary – Graph Drawing with Applications to Bioinformatics and Social Sciences}}, booktitle = {Graph Drawing with Applications to Bioinformatics and Social Sciences}, pages = {1--3}, series = {Dagstuhl Seminar Proceedings (DagSemProc)}, ISSN = {1862-4405}, year = {2008}, volume = {8191}, editor = {Stephen P. Borgatti and Stephen Kobourov and Oliver Kohlbacher and Petra Mutzel}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.08191.2}, URN = {urn:nbn:de:0030-drops-15523}, doi = {10.4230/DagSemProc.08191.2}, annote = {Keywords: Graph drawing, visualization, social sciences, bioinformatics} }
Published in: Dagstuhl Seminar Proceedings, Volume 8191, Graph Drawing with Applications to Bioinformatics and Social Sciences (2008)
Patrick Healy and Tim Dwyer. 08191 Working Group Report – Edge Thresholding. In Graph Drawing with Applications to Bioinformatics and Social Sciences. Dagstuhl Seminar Proceedings, Volume 8191, pp. 1-3, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2008)
@InProceedings{healy_et_al:DagSemProc.08191.3, author = {Healy, Patrick and Dwyer, Tim}, title = {{08191 Working Group Report – Edge Thresholding}}, booktitle = {Graph Drawing with Applications to Bioinformatics and Social Sciences}, pages = {1--3}, series = {Dagstuhl Seminar Proceedings (DagSemProc)}, ISSN = {1862-4405}, year = {2008}, volume = {8191}, editor = {Stephen P. Borgatti and Stephen Kobourov and Oliver Kohlbacher and Petra Mutzel}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.08191.3}, URN = {urn:nbn:de:0030-drops-15570}, doi = {10.4230/DagSemProc.08191.3}, annote = {Keywords: Graph drawing, edge thresholding} }
Published in: Dagstuhl Seminar Proceedings, Volume 8191, Graph Drawing with Applications to Bioinformatics and Social Sciences (2008)
Stephen Borgatti, Ulrik Brandes, Michael Kaufmann, Stephen Kobourov, Anna Lubiw, and Dorothea Wagner. 08191 Working Group Report – Visualization of Trajectories. In Graph Drawing with Applications to Bioinformatics and Social Sciences. Dagstuhl Seminar Proceedings, Volume 8191, pp. 1-3, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2008)
@InProceedings{borgatti_et_al:DagSemProc.08191.4, author = {Borgatti, Stephen and Brandes, Ulrik and Kaufmann, Michael and Kobourov, Stephen and Lubiw, Anna and Wagner, Dorothea}, title = {{08191 Working Group Report – Visualization of Trajectories}}, booktitle = {Graph Drawing with Applications to Bioinformatics and Social Sciences}, pages = {1--3}, series = {Dagstuhl Seminar Proceedings (DagSemProc)}, ISSN = {1862-4405}, year = {2008}, volume = {8191}, editor = {Stephen P. Borgatti and Stephen Kobourov and Oliver Kohlbacher and Petra Mutzel}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.08191.4}, URN = {urn:nbn:de:0030-drops-15558}, doi = {10.4230/DagSemProc.08191.4}, annote = {Keywords: Graph drawing, trajectories, paths} }
Published in: Dagstuhl Seminar Proceedings, Volume 8191, Graph Drawing with Applications to Bioinformatics and Social Sciences (2008)
Vladimir Batagelj, Franz J. Brandenburg, Walter Didimo, Guiseppe Liotta, and Maurizio Patrignani. 08191 Working Group Report – X-graphs of Y-graphs and their Representations. In Graph Drawing with Applications to Bioinformatics and Social Sciences. Dagstuhl Seminar Proceedings, Volume 8191, pp. 1-17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2008)
@InProceedings{batagelj_et_al:DagSemProc.08191.5, author = {Batagelj, Vladimir and Brandenburg, Franz J. and Didimo, Walter and Liotta, Guiseppe and Patrignani, Maurizio}, title = {{08191 Working Group Report – X-graphs of Y-graphs and their Representations}}, booktitle = {Graph Drawing with Applications to Bioinformatics and Social Sciences}, pages = {1--17}, series = {Dagstuhl Seminar Proceedings (DagSemProc)}, ISSN = {1862-4405}, year = {2008}, volume = {8191}, editor = {Stephen P. Borgatti and Stephen Kobourov and Oliver Kohlbacher and Petra Mutzel}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.08191.5}, URN = {urn:nbn:de:0030-drops-15563}, doi = {10.4230/DagSemProc.08191.5}, annote = {Keywords: Graph drawing, X-graphs of Y-graphs, visualization of large graphs} }
Published in: Dagstuhl Seminar Proceedings, Volume 8191, Graph Drawing with Applications to Bioinformatics and Social Sciences (2008)
Mario Albrecht, Alejandro Estrella-Balderrama, Markus Geyer, Carsten Gutwenger, Karsten Klein, Oliver Kohlbacher, and Michael Schulz. 08191 Working Group Summary – Visually Comparing a Set of Graphs. In Graph Drawing with Applications to Bioinformatics and Social Sciences. Dagstuhl Seminar Proceedings, Volume 8191, pp. 1-6, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2008)
@InProceedings{albrecht_et_al:DagSemProc.08191.6, author = {Albrecht, Mario and Estrella-Balderrama, Alejandro and Geyer, Markus and Gutwenger, Carsten and Klein, Karsten and Kohlbacher, Oliver and Schulz, Michael}, title = {{08191 Working Group Summary – Visually Comparing a Set of Graphs}}, booktitle = {Graph Drawing with Applications to Bioinformatics and Social Sciences}, pages = {1--6}, series = {Dagstuhl Seminar Proceedings (DagSemProc)}, ISSN = {1862-4405}, year = {2008}, volume = {8191}, editor = {Stephen P. Borgatti and Stephen Kobourov and Oliver Kohlbacher and Petra Mutzel}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.08191.6}, URN = {urn:nbn:de:0030-drops-15536}, doi = {10.4230/DagSemProc.08191.6}, annote = {Keywords: Graph drawing, visual graph comparison} }
Published in: Dagstuhl Seminar Proceedings, Volume 5471, Computational Proteomics (2006)
Marc Sturm, Sascha Quinten, Christian G. Huber, and Oliver Kohlbacher. A machine learning approach for prediction of DNA and peptide HPLC retention times. In Computational Proteomics. Dagstuhl Seminar Proceedings, Volume 5471, pp. 1-5, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2006)
@InProceedings{sturm_et_al:DagSemProc.05471.3, author = {Sturm, Marc and Quinten, Sascha and Huber, Christian G. and Kohlbacher, Oliver}, title = {{A machine learning approach for prediction of DNA and peptide HPLC retention times}}, booktitle = {Computational Proteomics}, pages = {1--5}, series = {Dagstuhl Seminar Proceedings (DagSemProc)}, ISSN = {1862-4405}, year = {2006}, volume = {5471}, editor = {Christian G. Huber and Oliver Kohlbacher and Knut Reinert}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.05471.3}, URN = {urn:nbn:de:0030-drops-5484}, doi = {10.4230/DagSemProc.05471.3}, annote = {Keywords: High performance liquid chromatography, mass spectrometry, retention time, prediction, peptide, DNA, support vector regression} }
Published in: Dagstuhl Seminar Proceedings, Volume 5471, Computational Proteomics (2006)
Knut Reinert, Oliver Kohlbacher, Clemens Gröpl, Eva Lange, Ole Schulz-Trieglaff, Marc Sturm, and Nico Pfeifer. OpenMS - A Framework for Quantitative HPLC/MS-Based Proteomics. In Computational Proteomics. Dagstuhl Seminar Proceedings, Volume 5471, pp. 1-7, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2006)
@InProceedings{reinert_et_al:DagSemProc.05471.13, author = {Reinert, Knut and Kohlbacher, Oliver and Gr\"{o}pl, Clemens and Lange, Eva and Schulz-Trieglaff, Ole and Sturm, Marc and Pfeifer, Nico}, title = {{OpenMS - A Framework for Quantitative HPLC/MS-Based Proteomics}}, booktitle = {Computational Proteomics}, pages = {1--7}, series = {Dagstuhl Seminar Proceedings (DagSemProc)}, ISSN = {1862-4405}, year = {2006}, volume = {5471}, editor = {Christian G. Huber and Oliver Kohlbacher and Knut Reinert}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.05471.13}, URN = {urn:nbn:de:0030-drops-5463}, doi = {10.4230/DagSemProc.05471.13}, annote = {Keywords: Proteomics, C++, Differential expression} }
Published in: Dagstuhl Seminar Proceedings, Volume 5471, Computational Proteomics (2006)
Christian G. Huber, Oliver Kohlbacher, and Knut Reinert. 05471 Abstract Collection – Computational Proteomics. In Computational Proteomics. Dagstuhl Seminar Proceedings, Volume 5471, pp. 1-15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2006)
@InProceedings{huber_et_al:DagSemProc.05471.1, author = {Huber, Christian G. and Kohlbacher, Oliver and Reinert, Knut}, title = {{05471 Abstract Collection – Computational Proteomics}}, booktitle = {Computational Proteomics}, pages = {1--15}, series = {Dagstuhl Seminar Proceedings (DagSemProc)}, ISSN = {1862-4405}, year = {2006}, volume = {5471}, editor = {Christian G. Huber and Oliver Kohlbacher and Knut Reinert}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.05471.1}, URN = {urn:nbn:de:0030-drops-5569}, doi = {10.4230/DagSemProc.05471.1}, annote = {Keywords: Proteomics, mass spectrometry, MALDI, HPLC-MS, differential expression, clinical proteomics, quantitation, identification} }
Published in: Dagstuhl Seminar Proceedings, Volume 5471, Computational Proteomics (2006)
Christian G. Huber, Oliver Kohlbacher, and Knut Reinert. 05471 Executive Summary – Computational Proteomics. In Computational Proteomics. Dagstuhl Seminar Proceedings, Volume 5471, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2006)
@InProceedings{huber_et_al:DagSemProc.05471.2, author = {Huber, Christian G. and Kohlbacher, Oliver and Reinert, Knut}, title = {{05471 Executive Summary – Computational Proteomics}}, booktitle = {Computational Proteomics}, series = {Dagstuhl Seminar Proceedings (DagSemProc)}, ISSN = {1862-4405}, year = {2006}, volume = {5471}, editor = {Christian G. Huber and Oliver Kohlbacher and Knut Reinert}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.05471.2}, URN = {urn:nbn:de:0030-drops-5406}, doi = {10.4230/DagSemProc.05471.2}, annote = {Keywords: Proteomics, mass spectrometry, MALDI, HPLC-MS, differential expression, clinical proteomics, quantitation, identification} }
Published in: Dagstuhl Seminar Proceedings, Volume 5471, Computational Proteomics (2006)
Clemens Gröpl. An Algorithm for Feature Finding in LC/MS Raw Data. In Computational Proteomics. Dagstuhl Seminar Proceedings, Volume 5471, pp. 1-9, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2006)
@InProceedings{gropl:DagSemProc.05471.4, author = {Gr\"{o}pl, Clemens}, title = {{An Algorithm for Feature Finding in LC/MS Raw Data}}, booktitle = {Computational Proteomics}, pages = {1--9}, series = {Dagstuhl Seminar Proceedings (DagSemProc)}, ISSN = {1862-4405}, year = {2006}, volume = {5471}, editor = {Christian G. Huber and Oliver Kohlbacher and Knut Reinert}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.05471.4}, URN = {urn:nbn:de:0030-drops-5341}, doi = {10.4230/DagSemProc.05471.4}, annote = {Keywords: Computational Proteomics, Quantitative Analysis, Liquid Chromatography, Mass Spectrometry, Algorithm, Software} }
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