Published in: Dagstuhl Reports, Volume 11, Issue 9 (2022)
Karsten Klein, Georgeta Elisabeta Marai, Kay Katja Nieselt, and Blaz Zupan. Visualization of Biological Data - From Analysis to Communication (Dagstuhl Seminar 21401). In Dagstuhl Reports, Volume 11, Issue 9, pp. 1-27, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2022)
@Article{klein_et_al:DagRep.11.9.1, author = {Klein, Karsten and Marai, Georgeta Elisabeta and Nieselt, Kay Katja and Zupan, Blaz}, title = {{Visualization of Biological Data - From Analysis to Communication (Dagstuhl Seminar 21401)}}, pages = {1--27}, journal = {Dagstuhl Reports}, ISSN = {2192-5283}, year = {2022}, volume = {11}, number = {9}, editor = {Klein, Karsten and Marai, Georgeta Elisabeta and Nieselt, Kay Katja and Zupan, Blaz}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagRep.11.9.1}, URN = {urn:nbn:de:0030-drops-159158}, doi = {10.4230/DagRep.11.9.1}, annote = {Keywords: Bioinformatics, biology, Imaging, interdisciplinarity, Omics, Visual analytics, visualization} }
Published in: Dagstuhl Reports, Volume 11, Issue 5 (2021)
Judy Kay, Tsvi Kuflik, and Michael Rovatsos. Transparency by Design (Dagstuhl Seminar 21231). In Dagstuhl Reports, Volume 11, Issue 5, pp. 1-22, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2021)
@Article{kay_et_al:DagRep.11.5.1, author = {Kay, Judy and Kuflik, Tsvi and Rovatsos, Michael}, title = {{Transparency by Design (Dagstuhl Seminar 21231)}}, pages = {1--22}, journal = {Dagstuhl Reports}, ISSN = {2192-5283}, year = {2021}, volume = {11}, number = {5}, editor = {Kay, Judy and Kuflik, Tsvi and Rovatsos, Michael}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagRep.11.5.1}, URN = {urn:nbn:de:0030-drops-155685}, doi = {10.4230/DagRep.11.5.1}, annote = {Keywords: Artificial Intelligence, Dagstuhl Seminar, Ethics, Human-ComputerInteraction, Software Engineering, Transparency} }
Published in: LIPIcs, Volume 197, 16th Conference on the Theory of Quantum Computation, Communication and Cryptography (TQC 2021)
Yupan Liu. StoqMA Meets Distribution Testing. In 16th Conference on the Theory of Quantum Computation, Communication and Cryptography (TQC 2021). Leibniz International Proceedings in Informatics (LIPIcs), Volume 197, pp. 4:1-4:22, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2021)
@InProceedings{liu:LIPIcs.TQC.2021.4, author = {Liu, Yupan}, title = {{StoqMA Meets Distribution Testing}}, booktitle = {16th Conference on the Theory of Quantum Computation, Communication and Cryptography (TQC 2021)}, pages = {4:1--4:22}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-198-6}, ISSN = {1868-8969}, year = {2021}, volume = {197}, editor = {Hsieh, Min-Hsiu}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/LIPIcs.TQC.2021.4}, URN = {urn:nbn:de:0030-drops-139995}, doi = {10.4230/LIPIcs.TQC.2021.4}, annote = {Keywords: StoqMA, distribution testing, error reduction, reversible circuits} }
Published in: LIPIcs, Volume 185, 12th Innovations in Theoretical Computer Science Conference (ITCS 2021)
Gregory Rosenthal. Bounds on the QAC^0 Complexity of Approximating Parity. In 12th Innovations in Theoretical Computer Science Conference (ITCS 2021). Leibniz International Proceedings in Informatics (LIPIcs), Volume 185, pp. 32:1-32:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2021)
@InProceedings{rosenthal:LIPIcs.ITCS.2021.32, author = {Rosenthal, Gregory}, title = {{Bounds on the QAC^0 Complexity of Approximating Parity}}, booktitle = {12th Innovations in Theoretical Computer Science Conference (ITCS 2021)}, pages = {32:1--32:20}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-177-1}, ISSN = {1868-8969}, year = {2021}, volume = {185}, editor = {Lee, James R.}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/LIPIcs.ITCS.2021.32}, URN = {urn:nbn:de:0030-drops-135713}, doi = {10.4230/LIPIcs.ITCS.2021.32}, annote = {Keywords: quantum circuit complexity, QAC^0, fanout, parity, nekomata} }
Published in: LIPIcs, Volume 172, 20th International Workshop on Algorithms in Bioinformatics (WABI 2020)
Cong Ma, Hongyu Zheng, and Carl Kingsford. Exact Transcript Quantification Over Splice Graphs. In 20th International Workshop on Algorithms in Bioinformatics (WABI 2020). Leibniz International Proceedings in Informatics (LIPIcs), Volume 172, pp. 12:1-12:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2020)
@InProceedings{ma_et_al:LIPIcs.WABI.2020.12, author = {Ma, Cong and Zheng, Hongyu and Kingsford, Carl}, title = {{Exact Transcript Quantification Over Splice Graphs}}, booktitle = {20th International Workshop on Algorithms in Bioinformatics (WABI 2020)}, pages = {12:1--12:18}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-161-0}, ISSN = {1868-8969}, year = {2020}, volume = {172}, editor = {Kingsford, Carl and Pisanti, Nadia}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2020.12}, URN = {urn:nbn:de:0030-drops-128013}, doi = {10.4230/LIPIcs.WABI.2020.12}, annote = {Keywords: RNA-seq, alternative splicing, transcript quantification, splice graph, network flow} }
Published in: Dagstuhl Reports, Volume 9, Issue 5 (2019)
John S. Baras, Sandra Hirche, Kay Römer, and Klaus Wehrle. Control of Networked Cyber-Physical Systems (Dagstuhl Seminar 19222). In Dagstuhl Reports, Volume 9, Issue 5, pp. 132-141, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2019)
@Article{baras_et_al:DagRep.9.5.132, author = {Baras, John S. and Hirche, Sandra and R\"{o}mer, Kay and Wehrle, Klaus}, title = {{Control of Networked Cyber-Physical Systems (Dagstuhl Seminar 19222)}}, pages = {132--141}, journal = {Dagstuhl Reports}, ISSN = {2192-5283}, year = {2019}, volume = {9}, number = {5}, editor = {Baras, John S. and Hirche, Sandra and R\"{o}mer, Kay and Wehrle, Klaus}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagRep.9.5.132}, URN = {urn:nbn:de:0030-drops-113847}, doi = {10.4230/DagRep.9.5.132}, annote = {Keywords: Control Theory, Cyber-Physical Systems, Latency, Network Architecture} }
Published in: LIPIcs, Volume 143, 19th International Workshop on Algorithms in Bioinformatics (WABI 2019)
Hongyi Xin, Mingfu Shao, and Carl Kingsford. Context-Aware Seeds for Read Mapping. In 19th International Workshop on Algorithms in Bioinformatics (WABI 2019). Leibniz International Proceedings in Informatics (LIPIcs), Volume 143, pp. 15:1-15:13, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2019)
@InProceedings{xin_et_al:LIPIcs.WABI.2019.15, author = {Xin, Hongyi and Shao, Mingfu and Kingsford, Carl}, title = {{Context-Aware Seeds for Read Mapping}}, booktitle = {19th International Workshop on Algorithms in Bioinformatics (WABI 2019)}, pages = {15:1--15:13}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-123-8}, ISSN = {1868-8969}, year = {2019}, volume = {143}, editor = {Huber, Katharina T. and Gusfield, Dan}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.15}, URN = {urn:nbn:de:0030-drops-110452}, doi = {10.4230/LIPIcs.WABI.2019.15}, annote = {Keywords: Read Mapping, Seed and Extend, Edit Distance, Suffix Trie} }
Published in: LIPIcs, Volume 143, 19th International Workshop on Algorithms in Bioinformatics (WABI 2019)
Yutong Qiu, Cong Ma, Han Xie, and Carl Kingsford. Detecting Transcriptomic Structural Variants in Heterogeneous Contexts via the Multiple Compatible Arrangements Problem. In 19th International Workshop on Algorithms in Bioinformatics (WABI 2019). Leibniz International Proceedings in Informatics (LIPIcs), Volume 143, pp. 18:1-18:5, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2019)
@InProceedings{qiu_et_al:LIPIcs.WABI.2019.18, author = {Qiu, Yutong and Ma, Cong and Xie, Han and Kingsford, Carl}, title = {{Detecting Transcriptomic Structural Variants in Heterogeneous Contexts via the Multiple Compatible Arrangements Problem}}, booktitle = {19th International Workshop on Algorithms in Bioinformatics (WABI 2019)}, pages = {18:1--18:5}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-123-8}, ISSN = {1868-8969}, year = {2019}, volume = {143}, editor = {Huber, Katharina T. and Gusfield, Dan}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.18}, URN = {urn:nbn:de:0030-drops-110483}, doi = {10.4230/LIPIcs.WABI.2019.18}, annote = {Keywords: transcriptomic structural variation, integer linear programming, heterogeneity} }
Published in: LIPIcs, Volume 143, 19th International Workshop on Algorithms in Bioinformatics (WABI 2019)
Natalie Sauerwald, Yihang Shen, and Carl Kingsford. Topological Data Analysis Reveals Principles of Chromosome Structure in Cellular Differentiation. In 19th International Workshop on Algorithms in Bioinformatics (WABI 2019). Leibniz International Proceedings in Informatics (LIPIcs), Volume 143, pp. 23:1-23:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2019)
@InProceedings{sauerwald_et_al:LIPIcs.WABI.2019.23, author = {Sauerwald, Natalie and Shen, Yihang and Kingsford, Carl}, title = {{Topological Data Analysis Reveals Principles of Chromosome Structure in Cellular Differentiation}}, booktitle = {19th International Workshop on Algorithms in Bioinformatics (WABI 2019)}, pages = {23:1--23:16}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-123-8}, ISSN = {1868-8969}, year = {2019}, volume = {143}, editor = {Huber, Katharina T. and Gusfield, Dan}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.23}, URN = {urn:nbn:de:0030-drops-110537}, doi = {10.4230/LIPIcs.WABI.2019.23}, annote = {Keywords: topological data analysis, chromosome structure, Hi-C, topologically associating domains} }
Published in: Dagstuhl Reports, Volume 8, Issue 4 (2018)
Jan Aerts, Nils Gehlenborg, Georgeta Elisabeta Marai, and Kay Katja Nieselt. Visualization of Biological Data - Crossroads (Dagstuhl Seminar 18161). In Dagstuhl Reports, Volume 8, Issue 4, pp. 32-71, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2018)
@Article{aerts_et_al:DagRep.8.4.32, author = {Aerts, Jan and Gehlenborg, Nils and Marai, Georgeta Elisabeta and Nieselt, Kay Katja}, title = {{Visualization of Biological Data - Crossroads (Dagstuhl Seminar 18161)}}, pages = {32--71}, journal = {Dagstuhl Reports}, ISSN = {2192-5283}, year = {2018}, volume = {8}, number = {4}, editor = {Aerts, Jan and Gehlenborg, Nils and Marai, Georgeta Elisabeta and Nieselt, Kay Katja}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagRep.8.4.32}, URN = {urn:nbn:de:0030-drops-97600}, doi = {10.4230/DagRep.8.4.32}, annote = {Keywords: imaging, omics, sequence analysis, visual analytics, visualisation} }
Published in: Dagstuhl Reports, Volume 7, Issue 4 (2018)
Lewis Chuang, Sven Gehring, Judy Kay, and Albrecht Schmidt. Ambient Notification Environments (Dagstuhl Seminar 17161). In Dagstuhl Reports, Volume 7, Issue 4, pp. 38-82, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2017)
@Article{chuang_et_al:DagRep.7.4.38, author = {Chuang, Lewis and Gehring, Sven and Kay, Judy and Schmidt, Albrecht}, title = {{Ambient Notification Environments (Dagstuhl Seminar 17161)}}, pages = {38--82}, journal = {Dagstuhl Reports}, ISSN = {2192-5283}, year = {2017}, volume = {7}, number = {4}, editor = {Chuang, Lewis and Gehring, Sven and Kay, Judy and Schmidt, Albrecht}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagRep.7.4.38}, URN = {urn:nbn:de:0030-drops-75475}, doi = {10.4230/DagRep.7.4.38}, annote = {Keywords: Ambient Notifications, Dagstuhl Seminar, Skill Transfer} }
Published in: Dagstuhl Reports, Volume 6, Issue 7 (2016)
Sándor Fekete, Andréa W. Richa, Kay Römer, and Christian Scheideler. Algorithmic Foundations of Programmable Matter (Dagstuhl Seminar 16271). In Dagstuhl Reports, Volume 6, Issue 7, pp. 1-14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2016)
@Article{fekete_et_al:DagRep.6.7.1, author = {Fekete, S\'{a}ndor and Richa, Andr\'{e}a W. and R\"{o}mer, Kay and Scheideler, Christian}, title = {{Algorithmic Foundations of Programmable Matter (Dagstuhl Seminar 16271)}}, pages = {1--14}, journal = {Dagstuhl Reports}, ISSN = {2192-5283}, year = {2016}, volume = {6}, number = {7}, editor = {Fekete, S\'{a}ndor and Richa, Andr\'{e}a W. and R\"{o}mer, Kay and Scheideler, Christian}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagRep.6.7.1}, URN = {urn:nbn:de:0030-drops-67599}, doi = {10.4230/DagRep.6.7.1}, annote = {Keywords: distributed algorithms, distributed systems, programmable matter, robotics, self-organization} }
Published in: Dagstuhl Reports, Volume 3, Issue 10 (2014)
Kay Hamacher, Jean Pierre Hubaux, and Gene Tsudik. Genomic Privacy (Dagstuhl Seminar 13412). In Dagstuhl Reports, Volume 3, Issue 10, pp. 25-35, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2014)
@Article{hamacher_et_al:DagRep.3.10.25, author = {Hamacher, Kay and Hubaux, Jean Pierre and Tsudik, Gene}, title = {{Genomic Privacy (Dagstuhl Seminar 13412)}}, pages = {25--35}, journal = {Dagstuhl Reports}, ISSN = {2192-5283}, year = {2014}, volume = {3}, number = {10}, editor = {Hamacher, Kay and Hubaux, Jean Pierre and Tsudik, Gene}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagRep.3.10.25}, URN = {urn:nbn:de:0030-drops-44267}, doi = {10.4230/DagRep.3.10.25}, annote = {Keywords: Genomics, Genetics, Health Data, Privacy Protection, Differential Privacy, Privacy by Design, Information Security, Cryptography, Secure Computation} }
Published in: Dagstuhl Seminar Proceedings, Volume 6431, Scalable Data Management in Evolving Networks (2007)
Peter A. Boncz, Angela Bonifati, Arantza Illarramendi, Peter Janacik, Birgitta König-Ries, Wolfgang Lehner, Pedro Jose Marrón, Wolfgang May, Aris Ouksel, Kay Römer, Brahmananda Sapkota, Kai-Uwe Sattler, Heinz Schweppe, Rita Steinmetz, and Can Türker. 06431 Working Group Report on Managing and Integrating Data in P2P Databases. In Scalable Data Management in Evolving Networks. Dagstuhl Seminar Proceedings, Volume 6431, pp. 1-3, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2007)
@InProceedings{boncz_et_al:DagSemProc.06431.3, author = {Boncz, Peter A. and Bonifati, Angela and Illarramendi, Arantza and Janacik, Peter and K\"{o}nig-Ries, Birgitta and Lehner, Wolfgang and Marr\'{o}n, Pedro Jose and May, Wolfgang and Ouksel, Aris and R\"{o}mer, Kay and Sapkota, Brahmananda and Sattler, Kai-Uwe and Schweppe, Heinz and Steinmetz, Rita and T\"{u}rker, Can}, title = {{06431 Working Group Report on Managing and Integrating Data in P2P Databases}}, booktitle = {Scalable Data Management in Evolving Networks}, pages = {1--3}, series = {Dagstuhl Seminar Proceedings (DagSemProc)}, ISSN = {1862-4405}, year = {2007}, volume = {6431}, editor = {Stefan B\"{o}ttcher and Le Gruenwald and Pedro Jose Marr\'{o}n and Evaggelia Pitoura}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.06431.3}, URN = {urn:nbn:de:0030-drops-9505}, doi = {10.4230/DagSemProc.06431.3}, annote = {Keywords: P2P database, data integration} }
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