10 Search Results for "Xin, Cheng"


Document
On Relaxed Locally Decodable Codes for Hamming and Insertion-Deletion Errors

Authors: Alexander R. Block, Jeremiah Blocki, Kuan Cheng, Elena Grigorescu, Xin Li, Yu Zheng, and Minshen Zhu

Published in: LIPIcs, Volume 264, 38th Computational Complexity Conference (CCC 2023)


Abstract
Locally Decodable Codes (LDCs) are error-correcting codes C:Σⁿ → Σ^m, encoding messages in Σⁿ to codewords in Σ^m, with super-fast decoding algorithms. They are important mathematical objects in many areas of theoretical computer science, yet the best constructions so far have codeword length m that is super-polynomial in n, for codes with constant query complexity and constant alphabet size. In a very surprising result, Ben-Sasson, Goldreich, Harsha, Sudan, and Vadhan (SICOMP 2006) show how to construct a relaxed version of LDCs (RLDCs) with constant query complexity and almost linear codeword length over the binary alphabet, and used them to obtain significantly-improved constructions of Probabilistically Checkable Proofs. In this work, we study RLDCs in the standard Hamming-error setting, and introduce their variants in the insertion and deletion (Insdel) error setting. Standard LDCs for Insdel errors were first studied by Ostrovsky and Paskin-Cherniavsky (Information Theoretic Security, 2015), and are further motivated by recent advances in DNA random access bio-technologies. Our first result is an exponential lower bound on the length of Hamming RLDCs making 2 queries (even adaptively), over the binary alphabet. This answers a question explicitly raised by Gur and Lachish (SICOMP 2021) and is the first exponential lower bound for RLDCs. Combined with the results of Ben-Sasson et al., our result exhibits a "phase-transition"-type behavior on the codeword length for some constant-query complexity. We achieve these lower bounds via a transformation of RLDCs to standard Hamming LDCs, using a careful analysis of restrictions of message bits that fix codeword bits. We further define two variants of RLDCs in the Insdel-error setting, a weak and a strong version. On the one hand, we construct weak Insdel RLDCs with almost linear codeword length and constant query complexity, matching the parameters of the Hamming variants. On the other hand, we prove exponential lower bounds for strong Insdel RLDCs. These results demonstrate that, while these variants are equivalent in the Hamming setting, they are significantly different in the insdel setting. Our results also prove a strict separation between Hamming RLDCs and Insdel RLDCs.

Cite as

Alexander R. Block, Jeremiah Blocki, Kuan Cheng, Elena Grigorescu, Xin Li, Yu Zheng, and Minshen Zhu. On Relaxed Locally Decodable Codes for Hamming and Insertion-Deletion Errors. In 38th Computational Complexity Conference (CCC 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 264, pp. 14:1-14:25, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)


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@InProceedings{block_et_al:LIPIcs.CCC.2023.14,
  author =	{Block, Alexander R. and Blocki, Jeremiah and Cheng, Kuan and Grigorescu, Elena and Li, Xin and Zheng, Yu and Zhu, Minshen},
  title =	{{On Relaxed Locally Decodable Codes for Hamming and Insertion-Deletion Errors}},
  booktitle =	{38th Computational Complexity Conference (CCC 2023)},
  pages =	{14:1--14:25},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-282-2},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{264},
  editor =	{Ta-Shma, Amnon},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops-dev.dagstuhl.de/entities/document/10.4230/LIPIcs.CCC.2023.14},
  URN =		{urn:nbn:de:0030-drops-182847},
  doi =		{10.4230/LIPIcs.CCC.2023.14},
  annote =	{Keywords: Relaxed Locally Decodable Codes, Hamming Errors, Insdel Errors, Lower Bounds}
}
Document
Track A: Algorithms, Complexity and Games
Linear Insertion Deletion Codes in the High-Noise and High-Rate Regimes

Authors: Kuan Cheng, Zhengzhong Jin, Xin Li, Zhide Wei, and Yu Zheng

Published in: LIPIcs, Volume 261, 50th International Colloquium on Automata, Languages, and Programming (ICALP 2023)


Abstract
This work continues the study of linear error correcting codes against adversarial insertion deletion errors (insdel errors). Previously, the work of Cheng, Guruswami, Haeupler, and Li [Kuan Cheng et al., 2021] showed the existence of asymptotically good linear insdel codes that can correct arbitrarily close to 1 fraction of errors over some constant size alphabet, or achieve rate arbitrarily close to 1/2 even over the binary alphabet. As shown in [Kuan Cheng et al., 2021], these bounds are also the best possible. However, known explicit constructions in [Kuan Cheng et al., 2021], and subsequent improved constructions by Con, Shpilka, and Tamo [Con et al., 2022] all fall short of meeting these bounds. Over any constant size alphabet, they can only achieve rate < 1/8 or correct < 1/4 fraction of errors; over the binary alphabet, they can only achieve rate < 1/1216 or correct < 1/54 fraction of errors. Apparently, previous techniques face inherent barriers to achieve rate better than 1/4 or correct more than 1/2 fraction of errors. In this work we give new constructions of such codes that meet these bounds, namely, asymptotically good linear insdel codes that can correct arbitrarily close to 1 fraction of errors over some constant size alphabet, and binary asymptotically good linear insdel codes that can achieve rate arbitrarily close to 1/2. All our constructions are efficiently encodable and decodable. Our constructions are based on a novel approach of code concatenation, which embeds the index information implicitly into codewords. This significantly differs from previous techniques and may be of independent interest. Finally, we also prove the existence of linear concatenated insdel codes with parameters that match random linear codes, and propose a conjecture about linear insdel codes.

Cite as

Kuan Cheng, Zhengzhong Jin, Xin Li, Zhide Wei, and Yu Zheng. Linear Insertion Deletion Codes in the High-Noise and High-Rate Regimes. In 50th International Colloquium on Automata, Languages, and Programming (ICALP 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 261, pp. 41:1-41:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)


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@InProceedings{cheng_et_al:LIPIcs.ICALP.2023.41,
  author =	{Cheng, Kuan and Jin, Zhengzhong and Li, Xin and Wei, Zhide and Zheng, Yu},
  title =	{{Linear Insertion Deletion Codes in the High-Noise and High-Rate Regimes}},
  booktitle =	{50th International Colloquium on Automata, Languages, and Programming (ICALP 2023)},
  pages =	{41:1--41:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-278-5},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{261},
  editor =	{Etessami, Kousha and Feige, Uriel and Puppis, Gabriele},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops-dev.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2023.41},
  URN =		{urn:nbn:de:0030-drops-180931},
  doi =		{10.4230/LIPIcs.ICALP.2023.41},
  annote =	{Keywords: Error correcting code, Edit distance, Pseudorandomness, Derandomization}
}
Document
Improved Decoding of Expander Codes

Authors: Xue Chen, Kuan Cheng, Xin Li, and Minghui Ouyang

Published in: LIPIcs, Volume 215, 13th Innovations in Theoretical Computer Science Conference (ITCS 2022)


Abstract
We study the classical expander codes, introduced by Sipser and Spielman [M. Sipser and D. A. Spielman, 1996]. Given any constants 0 < α, ε < 1/2, and an arbitrary bipartite graph with N vertices on the left, M < N vertices on the right, and left degree D such that any left subset S of size at most α N has at least (1-ε)|S|D neighbors, we show that the corresponding linear code given by parity checks on the right has distance at least roughly {α N}/{2 ε}. This is strictly better than the best known previous result of 2(1-ε) α N [Madhu Sudan, 2000; Viderman, 2013] whenever ε < 1/2, and improves the previous result significantly when ε is small. Furthermore, we show that this distance is tight in general, thus providing a complete characterization of the distance of general expander codes. Next, we provide several efficient decoding algorithms, which vastly improve previous results in terms of the fraction of errors corrected, whenever ε < 1/4. Finally, we also give a bound on the list-decoding radius of general expander codes, which beats the classical Johnson bound in certain situations (e.g., when the graph is almost regular and the code has a high rate). Our techniques exploit novel combinatorial properties of bipartite expander graphs. In particular, we establish a new size-expansion tradeoff, which may be of independent interests.

Cite as

Xue Chen, Kuan Cheng, Xin Li, and Minghui Ouyang. Improved Decoding of Expander Codes. In 13th Innovations in Theoretical Computer Science Conference (ITCS 2022). Leibniz International Proceedings in Informatics (LIPIcs), Volume 215, pp. 43:1-43:3, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2022)


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@InProceedings{chen_et_al:LIPIcs.ITCS.2022.43,
  author =	{Chen, Xue and Cheng, Kuan and Li, Xin and Ouyang, Minghui},
  title =	{{Improved Decoding of Expander Codes}},
  booktitle =	{13th Innovations in Theoretical Computer Science Conference (ITCS 2022)},
  pages =	{43:1--43:3},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-217-4},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{215},
  editor =	{Braverman, Mark},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops-dev.dagstuhl.de/entities/document/10.4230/LIPIcs.ITCS.2022.43},
  URN =		{urn:nbn:de:0030-drops-156394},
  doi =		{10.4230/LIPIcs.ITCS.2022.43},
  annote =	{Keywords: Expander Code, Decoding}
}
Document
Lower Bounds and Improved Algorithms for Asymmetric Streaming Edit Distance and Longest Common Subsequence

Authors: Xin Li and Yu Zheng

Published in: LIPIcs, Volume 213, 41st IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2021)


Abstract
In this paper, we study edit distance (ED) and longest common subsequence (LCS) in the asymmetric streaming model, introduced by Saks and Seshadhri [Saks and Seshadhri, 2013]. As an intermediate model between the random access model and the streaming model, this model allows one to have streaming access to one string and random access to the other string. Meanwhile, ED and LCS are both fundamental problems that are often studied on large strings, thus the (asymmetric) streaming model is ideal for studying these problems. Our first main contribution is a systematic study of space lower bounds for ED and LCS in the asymmetric streaming model. Previously, there are no explicitly stated results in this context, although some lower bounds about LCS can be inferred from the lower bounds for longest increasing subsequence (LIS) in [Sun and Woodruff, 2007; Gál and Gopalan, 2010; Ergun and Jowhari, 2008]. Yet these bounds only work for large alphabet size. In this paper, we develop several new techniques to handle ED in general and LCS for small alphabet size, thus establishing strong lower bounds for both problems. In particular, our lower bound for ED provides an exponential separation between edit distance and Hamming distance in the asymmetric streaming model. Our lower bounds also extend to LIS and longest non-decreasing subsequence (LNS) in the standard streaming model. Together with previous results, our bounds provide an almost complete picture for these two problems. As our second main contribution, we give improved algorithms for ED and LCS in the asymmetric streaming model. For ED, we improve the space complexity of the constant factor approximation algorithms in [Farhadi et al., 2020; Cheng et al., 2020] from Õ({n^δ}/δ) to O({d^δ}/δ polylog(n)), where n is the length of each string and d is the edit distance between the two strings. For LCS, we give the first 1/2+ε approximation algorithm with space n^δ for any constant δ > 0, over a binary alphabet. Our work leaves a plethora of intriguing open questions, including establishing lower bounds and designing algorithms for a natural generalization of LIS and LNS, which we call longest non-decreasing subsequence with threshold (LNST).

Cite as

Xin Li and Yu Zheng. Lower Bounds and Improved Algorithms for Asymmetric Streaming Edit Distance and Longest Common Subsequence. In 41st IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2021). Leibniz International Proceedings in Informatics (LIPIcs), Volume 213, pp. 27:1-27:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2021)


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@InProceedings{li_et_al:LIPIcs.FSTTCS.2021.27,
  author =	{Li, Xin and Zheng, Yu},
  title =	{{Lower Bounds and Improved Algorithms for Asymmetric Streaming Edit Distance and Longest Common Subsequence}},
  booktitle =	{41st IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2021)},
  pages =	{27:1--27:23},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-215-0},
  ISSN =	{1868-8969},
  year =	{2021},
  volume =	{213},
  editor =	{Boja\'{n}czyk, Miko{\l}aj and Chekuri, Chandra},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops-dev.dagstuhl.de/entities/document/10.4230/LIPIcs.FSTTCS.2021.27},
  URN =		{urn:nbn:de:0030-drops-155381},
  doi =		{10.4230/LIPIcs.FSTTCS.2021.27},
  annote =	{Keywords: Asymmetric Streaming Model, Edit Distance, Longest Common Subsequence, Space Lower Bound}
}
Document
Track A: Algorithms, Complexity and Games
Streaming and Small Space Approximation Algorithms for Edit Distance and Longest Common Subsequence

Authors: Kuan Cheng, Alireza Farhadi, MohammadTaghi Hajiaghayi, Zhengzhong Jin, Xin Li, Aviad Rubinstein, Saeed Seddighin, and Yu Zheng

Published in: LIPIcs, Volume 198, 48th International Colloquium on Automata, Languages, and Programming (ICALP 2021)


Abstract
The edit distance (ED) and longest common subsequence (LCS) are two fundamental problems which quantify how similar two strings are to one another. In this paper, we first consider these problems in the asymmetric streaming model introduced by Andoni, Krauthgamer and Onak [Andoni et al., 2010] (FOCS'10) and Saks and Seshadhri [Saks and Seshadhri, 2013] (SODA'13). In this model we have random access to one string and streaming access the other one. Our main contribution is a constant factor approximation algorithm for ED with memory Õ(n^δ) for any constant δ > 0. In addition to this, we present an upper bound of Õ _ε(√n) on the memory needed to approximate ED or LCS within a factor 1±ε. All our algorithms are deterministic and run in polynomial time in a single pass. We further study small-space approximation algorithms for ED, LCS, and longest increasing sequence (LIS) in the non-streaming setting. Here, we design algorithms that achieve 1 ± ε approximation for all three problems, where ε > 0 can be any constant and even slightly sub-constant. Our algorithms only use poly-logarithmic space while maintaining a polynomial running time. This significantly improves previous results in terms of space complexity, where all known results need to use space at least Ω(√n). Our algorithms make novel use of triangle inequality and carefully designed recursions to save space, which can be of independent interest.

Cite as

Kuan Cheng, Alireza Farhadi, MohammadTaghi Hajiaghayi, Zhengzhong Jin, Xin Li, Aviad Rubinstein, Saeed Seddighin, and Yu Zheng. Streaming and Small Space Approximation Algorithms for Edit Distance and Longest Common Subsequence. In 48th International Colloquium on Automata, Languages, and Programming (ICALP 2021). Leibniz International Proceedings in Informatics (LIPIcs), Volume 198, pp. 54:1-54:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2021)


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@InProceedings{cheng_et_al:LIPIcs.ICALP.2021.54,
  author =	{Cheng, Kuan and Farhadi, Alireza and Hajiaghayi, MohammadTaghi and Jin, Zhengzhong and Li, Xin and Rubinstein, Aviad and Seddighin, Saeed and Zheng, Yu},
  title =	{{Streaming and Small Space Approximation Algorithms for Edit Distance and Longest Common Subsequence}},
  booktitle =	{48th International Colloquium on Automata, Languages, and Programming (ICALP 2021)},
  pages =	{54:1--54:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-195-5},
  ISSN =	{1868-8969},
  year =	{2021},
  volume =	{198},
  editor =	{Bansal, Nikhil and Merelli, Emanuela and Worrell, James},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops-dev.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2021.54},
  URN =		{urn:nbn:de:0030-drops-141236},
  doi =		{10.4230/LIPIcs.ICALP.2021.54},
  annote =	{Keywords: Edit Distance, Longest Common Subsequence, Longest Increasing Subsequence, Space Efficient Algorithm, Approximation Algorithm}
}
Document
Elder-Rule-Staircodes for Augmented Metric Spaces

Authors: Chen Cai, Woojin Kim, Facundo Mémoli, and Yusu Wang

Published in: LIPIcs, Volume 164, 36th International Symposium on Computational Geometry (SoCG 2020)


Abstract
An augmented metric space (X, d_X, f_X) is a metric space (X, d_X) equipped with a function f_X: X → ℝ. It arises commonly in practice, e.g, a point cloud X in ℝ^d where each point x∈ X has a density function value f_X(x) associated to it. Such an augmented metric space naturally gives rise to a 2-parameter filtration. However, the resulting 2-parameter persistence module could still be of wild representation type, and may not have simple indecomposables. In this paper, motivated by the elder-rule for the zeroth homology of a 1-parameter filtration, we propose a barcode-like summary, called the elder-rule-staircode, as a way to encode the zeroth homology of the 2-parameter filtration induced by a finite augmented metric space. Specifically, given a finite (X, d_X, f_X), its elder-rule-staircode consists of n = |X| number of staircase-like blocks in the plane. We show that the fibered barcode, the fibered merge tree, and the graded Betti numbers associated to the zeroth homology of the 2-parameter filtration induced by (X, d_X, f_X) can all be efficiently computed once the elder-rule-staircode is given. Furthermore, for certain special cases, this staircode corresponds exactly to the set of indecomposables of the zeroth homology of the 2-parameter filtration. Finally, we develop and implement an efficient algorithm to compute the elder-rule-staircode in O(n²log n) time, which can be improved to O(n²α(n)) if X is from a fixed dimensional Euclidean space ℝ^d, where α(n) is the inverse Ackermann function.

Cite as

Chen Cai, Woojin Kim, Facundo Mémoli, and Yusu Wang. Elder-Rule-Staircodes for Augmented Metric Spaces. In 36th International Symposium on Computational Geometry (SoCG 2020). Leibniz International Proceedings in Informatics (LIPIcs), Volume 164, pp. 26:1-26:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2020)


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@InProceedings{cai_et_al:LIPIcs.SoCG.2020.26,
  author =	{Cai, Chen and Kim, Woojin and M\'{e}moli, Facundo and Wang, Yusu},
  title =	{{Elder-Rule-Staircodes for Augmented Metric Spaces}},
  booktitle =	{36th International Symposium on Computational Geometry (SoCG 2020)},
  pages =	{26:1--26:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-143-6},
  ISSN =	{1868-8969},
  year =	{2020},
  volume =	{164},
  editor =	{Cabello, Sergio and Chen, Danny Z.},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops-dev.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2020.26},
  URN =		{urn:nbn:de:0030-drops-121848},
  doi =		{10.4230/LIPIcs.SoCG.2020.26},
  annote =	{Keywords: Persistent homology, Multiparameter persistence, Barcodes, Elder rule, Hierarchical clustering, Graded Betti numbers}
}
Document
GPU-Accelerated Computation of Vietoris-Rips Persistence Barcodes

Authors: Simon Zhang, Mengbai Xiao, and Hao Wang

Published in: LIPIcs, Volume 164, 36th International Symposium on Computational Geometry (SoCG 2020)


Abstract
The computation of Vietoris-Rips persistence barcodes is both execution-intensive and memory-intensive. In this paper, we study the computational structure of Vietoris-Rips persistence barcodes, and identify several unique mathematical properties and algorithmic opportunities with connections to the GPU. Mathematically and empirically, we look into the properties of apparent pairs, which are independently identifiable persistence pairs comprising up to 99% of persistence pairs. We give theoretical upper and lower bounds of the apparent pair rate and model the average case. We also design massively parallel algorithms to take advantage of the very large number of simplices that can be processed independently of each other. Having identified these opportunities, we develop a GPU-accelerated software for computing Vietoris-Rips persistence barcodes, called Ripser++. The software achieves up to 30x speedup over the total execution time of the original Ripser and also reduces CPU-memory usage by up to 2.0x. We believe our GPU-acceleration based efforts open a new chapter for the advancement of topological data analysis in the post-Moore’s Law era.

Cite as

Simon Zhang, Mengbai Xiao, and Hao Wang. GPU-Accelerated Computation of Vietoris-Rips Persistence Barcodes. In 36th International Symposium on Computational Geometry (SoCG 2020). Leibniz International Proceedings in Informatics (LIPIcs), Volume 164, pp. 70:1-70:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2020)


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@InProceedings{zhang_et_al:LIPIcs.SoCG.2020.70,
  author =	{Zhang, Simon and Xiao, Mengbai and Wang, Hao},
  title =	{{GPU-Accelerated Computation of Vietoris-Rips Persistence Barcodes}},
  booktitle =	{36th International Symposium on Computational Geometry (SoCG 2020)},
  pages =	{70:1--70:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-143-6},
  ISSN =	{1868-8969},
  year =	{2020},
  volume =	{164},
  editor =	{Cabello, Sergio and Chen, Danny Z.},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops-dev.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2020.70},
  URN =		{urn:nbn:de:0030-drops-122287},
  doi =		{10.4230/LIPIcs.SoCG.2020.70},
  annote =	{Keywords: Parallel Algorithms, Topological Data Analysis, Vietoris-Rips, Persistent Homology, Apparent Pairs, High Performance Computing, GPU, Random Graphs}
}
Document
Track A: Algorithms, Complexity and Games
Block Edit Errors with Transpositions: Deterministic Document Exchange Protocols and Almost Optimal Binary Codes

Authors: Kuan Cheng, Zhengzhong Jin, Xin Li, and Ke Wu

Published in: LIPIcs, Volume 132, 46th International Colloquium on Automata, Languages, and Programming (ICALP 2019)


Abstract
Document exchange and error correcting codes are two fundamental problems regarding communications. In the first problem, Alice and Bob each holds a string, and the goal is for Alice to send a short sketch to Bob, so that Bob can recover Alice’s string. In the second problem, Alice sends a message with some redundant information to Bob through a channel that can add adversarial errors, and the goal is for Bob to correctly recover the message despite the errors. In both problems, an upper bound is placed on the number of errors between the two strings or that the channel can add, and a major goal is to minimize the size of the sketch or the redundant information. In this paper we focus on deterministic document exchange protocols and binary error correcting codes. Both problems have been studied extensively. In the case of Hamming errors (i.e., bit substitutions) and bit erasures, we have explicit constructions with asymptotically optimal parameters. However, other error types are still rather poorly understood. In a recent work [Kuan Cheng et al., 2018], the authors constructed explicit deterministic document exchange protocols and binary error correcting codes for edit errors with almost optimal parameters. Unfortunately, the constructions in [Kuan Cheng et al., 2018] do not work for other common errors such as block transpositions. In this paper, we generalize the constructions in [Kuan Cheng et al., 2018] to handle a much larger class of errors. These include bursts of insertions and deletions, as well as block transpositions. Specifically, we consider document exchange and error correcting codes where the total number of block insertions, block deletions, and block transpositions is at most k <= alpha n/log n for some constant 0<alpha<1. In addition, the total number of bits inserted and deleted by the first two kinds of operations is at most t <= beta n for some constant 0<beta<1, where n is the length of Alice’s string or message. We construct explicit, deterministic document exchange protocols with sketch size O((k log n +t) log^2 n/{k log n + t}) and explicit binary error correcting code with O(k log n log log log n+t) redundant bits. As a comparison, the information-theoretic optimum for both problems is Theta(k log n+t). As far as we know, previously there are no known explicit deterministic document exchange protocols in this case, and the best known binary code needs Omega(n) redundant bits even to correct just one block transposition [L. J. Schulman and D. Zuckerman, 1999].

Cite as

Kuan Cheng, Zhengzhong Jin, Xin Li, and Ke Wu. Block Edit Errors with Transpositions: Deterministic Document Exchange Protocols and Almost Optimal Binary Codes. In 46th International Colloquium on Automata, Languages, and Programming (ICALP 2019). Leibniz International Proceedings in Informatics (LIPIcs), Volume 132, pp. 37:1-37:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2019)


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@InProceedings{cheng_et_al:LIPIcs.ICALP.2019.37,
  author =	{Cheng, Kuan and Jin, Zhengzhong and Li, Xin and Wu, Ke},
  title =	{{Block Edit Errors with Transpositions: Deterministic Document Exchange Protocols and Almost Optimal Binary Codes}},
  booktitle =	{46th International Colloquium on Automata, Languages, and Programming (ICALP 2019)},
  pages =	{37:1--37:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-109-2},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{132},
  editor =	{Baier, Christel and Chatzigiannakis, Ioannis and Flocchini, Paola and Leonardi, Stefano},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops-dev.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2019.37},
  URN =		{urn:nbn:de:0030-drops-106137},
  doi =		{10.4230/LIPIcs.ICALP.2019.37},
  annote =	{Keywords: Deterministic document exchange, error correcting code, block edit error}
}
Document
Randomness Extraction in AC0 and with Small Locality

Authors: Kuan Cheng and Xin Li

Published in: LIPIcs, Volume 116, Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2018)


Abstract
Randomness extractors, which extract high quality (almost-uniform) random bits from biased random sources, are important objects both in theory and in practice. While there have been significant progress in obtaining near optimal constructions of randomness extractors in various settings, the computational complexity of randomness extractors is still much less studied. In particular, it is not clear whether randomness extractors with good parameters can be computed in several interesting complexity classes that are much weaker than P. In this paper we study randomness extractors in the following two models of computation: (1) constant-depth circuits (AC^0), and (2) the local computation model. Previous work in these models, such as [Viola, 2005], [Goldreich et al., 2015] and [Bogdanov and Guo, 2013], only achieve constructions with weak parameters. In this work we give explicit constructions of randomness extractors with much better parameters. Our results on AC^0 extractors refute a conjecture in [Goldreich et al., 2015] and answer several open problems there. We also provide a lower bound on the error of extractors in AC^0, which together with the entropy lower bound in [Viola, 2005; Goldreich et al., 2015] almost completely characterizes extractors in this class. Our results on local extractors also significantly improve the seed length in [Bogdanov and Guo, 2013]. As an application, we use our AC^0 extractors to study pseudorandom generators in AC^0, and show that we can construct both cryptographic pseudorandom generators (under reasonable computational assumptions) and unconditional pseudorandom generators for space bounded computation with very good parameters. Our constructions combine several previous techniques in randomness extractors, as well as introduce new techniques to reduce or preserve the complexity of extractors, which may be of independent interest. These include (1) a general way to reduce the error of strong seeded extractors while preserving the AC^0 property and small locality, and (2) a seeded randomness condenser with small locality.

Cite as

Kuan Cheng and Xin Li. Randomness Extraction in AC0 and with Small Locality. In Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2018). Leibniz International Proceedings in Informatics (LIPIcs), Volume 116, pp. 37:1-37:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2018)


Copy BibTex To Clipboard

@InProceedings{cheng_et_al:LIPIcs.APPROX-RANDOM.2018.37,
  author =	{Cheng, Kuan and Li, Xin},
  title =	{{Randomness Extraction in AC0 and with Small Locality}},
  booktitle =	{Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2018)},
  pages =	{37:1--37:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-085-9},
  ISSN =	{1868-8969},
  year =	{2018},
  volume =	{116},
  editor =	{Blais, Eric and Jansen, Klaus and D. P. Rolim, Jos\'{e} and Steurer, David},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops-dev.dagstuhl.de/entities/document/10.4230/LIPIcs.APPROX-RANDOM.2018.37},
  URN =		{urn:nbn:de:0030-drops-94414},
  doi =		{10.4230/LIPIcs.APPROX-RANDOM.2018.37},
  annote =	{Keywords: Randomness Extraction, AC0, Locality, Pseudorandom Generator}
}
Document
Computing Bottleneck Distance for 2-D Interval Decomposable Modules

Authors: Tamal K. Dey and Cheng Xin

Published in: LIPIcs, Volume 99, 34th International Symposium on Computational Geometry (SoCG 2018)


Abstract
Computation of the interleaving distance between persistence modules is a central task in topological data analysis. For 1-D persistence modules, thanks to the isometry theorem, this can be done by computing the bottleneck distance with known efficient algorithms. The question is open for most n-D persistence modules, n>1, because of the well recognized complications of the indecomposables. Here, we consider a reasonably complicated class called 2-D interval decomposable modules whose indecomposables may have a description of non-constant complexity. We present a polynomial time algorithm to compute the bottleneck distance for these modules from indecomposables, which bounds the interleaving distance from above, and give another algorithm to compute a new distance called dimension distance that bounds it from below.

Cite as

Tamal K. Dey and Cheng Xin. Computing Bottleneck Distance for 2-D Interval Decomposable Modules. In 34th International Symposium on Computational Geometry (SoCG 2018). Leibniz International Proceedings in Informatics (LIPIcs), Volume 99, pp. 32:1-32:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2018)


Copy BibTex To Clipboard

@InProceedings{dey_et_al:LIPIcs.SoCG.2018.32,
  author =	{Dey, Tamal K. and Xin, Cheng},
  title =	{{Computing Bottleneck Distance for 2-D Interval Decomposable Modules}},
  booktitle =	{34th International Symposium on Computational Geometry (SoCG 2018)},
  pages =	{32:1--32:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-066-8},
  ISSN =	{1868-8969},
  year =	{2018},
  volume =	{99},
  editor =	{Speckmann, Bettina and T\'{o}th, Csaba D.},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops-dev.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2018.32},
  URN =		{urn:nbn:de:0030-drops-87453},
  doi =		{10.4230/LIPIcs.SoCG.2018.32},
  annote =	{Keywords: Persistence modules, bottleneck distance, interleaving distance}
}
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