@InProceedings{norri_et_al:LIPIcs.WABI.2018.15, author = {Norri, Tuukka and Cazaux, Bastien and Kosolobov, Dmitry and M\"{a}kinen, Veli}, title = {{Minimum Segmentation for Pan-genomic Founder Reconstruction in Linear Time}}, booktitle = {18th International Workshop on Algorithms in Bioinformatics (WABI 2018)}, pages = {15:1--15:15}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-082-8}, ISSN = {1868-8969}, year = {2018}, volume = {113}, editor = {Parida, Laxmi and Ukkonen, Esko}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2018.15}, URN = {urn:nbn:de:0030-drops-93175}, doi = {10.4230/LIPIcs.WABI.2018.15}, annote = {Keywords: Pan-genome indexing, founder reconstruction, dynamic programming, positional Burrows-Wheeler transform, range minimum query} }