@InProceedings{siren_et_al:LIPIcs.WABI.2018.4, author = {Sir\'{e}n, Jouni and Garrison, Erik and Novak, Adam M. and Paten, Benedict J. and Durbin, Richard}, title = {{Haplotype-aware graph indexes}}, booktitle = {18th International Workshop on Algorithms in Bioinformatics (WABI 2018)}, pages = {4:1--4:13}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-082-8}, ISSN = {1868-8969}, year = {2018}, volume = {113}, editor = {Parida, Laxmi and Ukkonen, Esko}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2018.4}, URN = {urn:nbn:de:0030-drops-93060}, doi = {10.4230/LIPIcs.WABI.2018.4}, annote = {Keywords: FM-indexes, variation graphs, haplotypes} }