@InProceedings{apostolico_et_al:DagSemProc.10231.1,
  author =	{Apostolico, Alberto and Dress, Andreas and Parida, Laxmi},
  title =	{{10231 Abstracts Collection – Structure Discovery in Biology: Motifs, Networks \& Phylogenies}},
  booktitle =	{Structure Discovery in Biology: Motifs, Networks \& Phylogenies},
  pages =	{1--20},
  series =	{Dagstuhl Seminar Proceedings (DagSemProc)},
  ISSN =	{1862-4405},
  year =	{2010},
  volume =	{10231},
  editor =	{Alberto Apostolico and Andreas Dress and Laxmi Parida},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/DagSemProc.10231.1},
  URN =		{urn:nbn:de:0030-drops-26910},
  doi =		{10.4230/DagSemProc.10231.1},
  annote =	{Keywords: Mathematical biology, computational biology, algorithmic bioinformatics, pattern discovery, phylogenetics, networks}
}
@InProceedings{bergeron_et_al:DagSemProc.10231.2,
  author =	{Bergeron, Anne and Mixtacki, Julia and Stoye, Jens},
  title =	{{A New Linear Time Algorithm to Compute the Genomic Distance Via the Double Cut and Join Distance}},
  booktitle =	{Structure Discovery in Biology: Motifs, Networks \& Phylogenies},
  pages =	{1--25},
  series =	{Dagstuhl Seminar Proceedings (DagSemProc)},
  ISSN =	{1862-4405},
  year =	{2010},
  volume =	{10231},
  editor =	{Alberto Apostolico and Andreas Dress and Laxmi Parida},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/DagSemProc.10231.2},
  URN =		{urn:nbn:de:0030-drops-26892},
  doi =		{10.4230/DagSemProc.10231.2},
  annote =	{Keywords: Comparative genomics, genomic distance computation, HP theory}
}
@InProceedings{galle:DagSemProc.10231.3,
  author =	{Gall\'{e}, Matthias},
  title =	{{A New Tree Distance Metric for Structural Comparison of Sequences}},
  booktitle =	{Structure Discovery in Biology: Motifs, Networks \& Phylogenies},
  pages =	{1--9},
  series =	{Dagstuhl Seminar Proceedings (DagSemProc)},
  ISSN =	{1862-4405},
  year =	{2010},
  volume =	{10231},
  editor =	{Alberto Apostolico and Andreas Dress and Laxmi Parida},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/DagSemProc.10231.3},
  URN =		{urn:nbn:de:0030-drops-27375},
  doi =		{10.4230/DagSemProc.10231.3},
  annote =	{Keywords: Tree distance, structure discovery, Parseval metric, Tanimoto distance}
}
@InProceedings{pizzi:DagSemProc.10231.4,
  author =	{Pizzi, Cinzia},
  title =	{{Efficient computation of statistics for words with mismatches}},
  booktitle =	{Structure Discovery in Biology: Motifs, Networks \& Phylogenies},
  pages =	{1--22},
  series =	{Dagstuhl Seminar Proceedings (DagSemProc)},
  ISSN =	{1862-4405},
  year =	{2010},
  volume =	{10231},
  editor =	{Alberto Apostolico and Andreas Dress and Laxmi Parida},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/DagSemProc.10231.4},
  URN =		{urn:nbn:de:0030-drops-27384},
  doi =		{10.4230/DagSemProc.10231.4},
  annote =	{Keywords: Statistics on words, mismatches, dynamic programming, biological sequences.}
}
@InProceedings{nicolae_et_al:DagSemProc.10231.5,
  author =	{Nicolae, Marius and Mangul, Serghei and Mandoiu, Ion and Zelikovsky, Alex},
  title =	{{Estimation of alternative splicing isoform frequencies from RNA-Seq data}},
  booktitle =	{Structure Discovery in Biology: Motifs, Networks \& Phylogenies},
  pages =	{1--3},
  series =	{Dagstuhl Seminar Proceedings (DagSemProc)},
  ISSN =	{1862-4405},
  year =	{2010},
  volume =	{10231},
  editor =	{Alberto Apostolico and Andreas Dress and Laxmi Parida},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/DagSemProc.10231.5},
  URN =		{urn:nbn:de:0030-drops-26876},
  doi =		{10.4230/DagSemProc.10231.5},
  annote =	{Keywords: RNA-Seq, alternative splicing isoforms, expectation maximization}
}
@InProceedings{giancarlo_et_al:DagSemProc.10231.6,
  author =	{Giancarlo, Raffaele and Corona, Davide and Di Benedetto, Valeria and Gabriele, Alessandra and Utro, Filippo},
  title =	{{Functional Information, Biomolecular Messages and Complexity of BioSequences and Structures}},
  booktitle =	{Structure Discovery in Biology: Motifs, Networks \& Phylogenies},
  pages =	{1--13},
  series =	{Dagstuhl Seminar Proceedings (DagSemProc)},
  ISSN =	{1862-4405},
  year =	{2010},
  volume =	{10231},
  editor =	{Alberto Apostolico and Andreas Dress and Laxmi Parida},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/DagSemProc.10231.6},
  URN =		{urn:nbn:de:0030-drops-26884},
  doi =		{10.4230/DagSemProc.10231.6},
  annote =	{Keywords: Functional activity, sequence complexity, combinatorics on words, protein-DNA interaction.}
}
@InProceedings{comin_et_al:DagSemProc.10231.7,
  author =	{Comin, Matteo and Verzotto, Davide},
  title =	{{Remote Homology Detection of Protein Sequences}},
  booktitle =	{Structure Discovery in Biology: Motifs, Networks \& Phylogenies},
  pages =	{1--20},
  series =	{Dagstuhl Seminar Proceedings (DagSemProc)},
  ISSN =	{1862-4405},
  year =	{2010},
  volume =	{10231},
  editor =	{Alberto Apostolico and Andreas Dress and Laxmi Parida},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/DagSemProc.10231.7},
  URN =		{urn:nbn:de:0030-drops-27419},
  doi =		{10.4230/DagSemProc.10231.7},
  annote =	{Keywords: Classification of protein sequences, irredundant patterns}
}
@InProceedings{dress_et_al:DagSemProc.10231.8,
  author =	{Dress, Andreas and Hordijk, Wim and Wei, Lin and Serocka, Peter},
  title =	{{The Ideal Storage Cellular Automaton Model}},
  booktitle =	{Structure Discovery in Biology: Motifs, Networks \& Phylogenies},
  pages =	{1--8},
  series =	{Dagstuhl Seminar Proceedings (DagSemProc)},
  ISSN =	{1862-4405},
  year =	{2010},
  volume =	{10231},
  editor =	{Alberto Apostolico and Andreas Dress and Laxmi Parida},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/DagSemProc.10231.8},
  URN =		{urn:nbn:de:0030-drops-27280},
  doi =		{10.4230/DagSemProc.10231.8},
  annote =	{Keywords: }
}