@Proceedings{huber_et_al:LIPIcs.WABI.2019,
  title =	{{LIPIcs, Volume 143, WABI'19, Complete Volume}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019},
  URN =		{urn:nbn:de:0030-drops-112994},
  doi =		{10.4230/LIPIcs.WABI.2019},
  annote =	{Keywords: Applied computing, Bioinformatics; Theory of computation, Design and analysis of algorithms; Mathematics of computing, Probabilistic inference problem}
}
@InProceedings{huber_et_al:LIPIcs.WABI.2019.0,
  author =	{Huber, Katharina T. and Gusfield, Dan},
  title =	{{Front Matter, Table of Contents, Preface, Conference Organization}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{0:i--0:xii},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.0},
  URN =		{urn:nbn:de:0030-drops-110307},
  doi =		{10.4230/LIPIcs.WABI.2019.0},
  annote =	{Keywords: Front Matter, Table of Contents, Preface, Conference Organization}
}
@InProceedings{jansson_et_al:LIPIcs.WABI.2019.1,
  author =	{Jansson, Jesper and Mampentzidis, Konstantinos and T. P., Sandhya},
  title =	{{Building a Small and Informative Phylogenetic Supertree}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{1:1--1:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.1},
  URN =		{urn:nbn:de:0030-drops-110316},
  doi =		{10.4230/LIPIcs.WABI.2019.1},
  annote =	{Keywords: phylogenetic tree, supertree, rooted triplet, approximation algorithm}
}
@InProceedings{wittler:LIPIcs.WABI.2019.2,
  author =	{Wittler, Roland},
  title =	{{Alignment- and Reference-Free Phylogenomics with Colored de Bruijn Graphs}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{2:1--2:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.2},
  URN =		{urn:nbn:de:0030-drops-110325},
  doi =		{10.4230/LIPIcs.WABI.2019.2},
  annote =	{Keywords: Phylogenomics, phylogenetics, phylogenetic splits, colored de Bruijn graphs}
}
@InProceedings{clement:LIPIcs.WABI.2019.3,
  author =	{Clement, Nathan L.},
  title =	{{Quantified Uncertainty of Flexible Protein-Protein Docking Algorithms}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{3:1--3:12},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.3},
  URN =		{urn:nbn:de:0030-drops-110335},
  doi =		{10.4230/LIPIcs.WABI.2019.3},
  annote =	{Keywords: protein-protein docking, uncertainty quantification, protein flexibility, low-discrepancy sampling, high-dimensional sampling}
}
@InProceedings{christensen_et_al:LIPIcs.WABI.2019.4,
  author =	{Christensen, Sarah and Molloy, Erin K. and Vachaspati, Pranjal and Warnow, Tandy},
  title =	{{TRACTION: Fast Non-Parametric Improvement of Estimated Gene Trees}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{4:1--4:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.4},
  URN =		{urn:nbn:de:0030-drops-110347},
  doi =		{10.4230/LIPIcs.WABI.2019.4},
  annote =	{Keywords: Gene tree correction, horizontal gene transfer, incomplete lineage sorting}
}
@InProceedings{yamada_et_al:LIPIcs.WABI.2019.5,
  author =	{Yamada, Kohei and Chen, Zhi-Zhong and Wang, Lusheng},
  title =	{{Better Practical Algorithms for rSPR Distance and Hybridization Number}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{5:1--5:12},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.5},
  URN =		{urn:nbn:de:0030-drops-110355},
  doi =		{10.4230/LIPIcs.WABI.2019.5},
  annote =	{Keywords: phylogenetic tree, fixed-parameter algorithms, approximation algorithms, Monte Carlo tree search}
}
@InProceedings{georgiev_et_al:LIPIcs.WABI.2019.6,
  author =	{Georgiev, Georgi D. and Dodd, Kevin F. and Chen, Brian Y.},
  title =	{{pClay: A Precise Parallel Algorithm for Comparing Molecular Surfaces}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{6:1--6:13},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.6},
  URN =		{urn:nbn:de:0030-drops-110365},
  doi =		{10.4230/LIPIcs.WABI.2019.6},
  annote =	{Keywords: Specificity Annotation, Structure Comparison, Cavity Analysis}
}
@InProceedings{vaddadi_et_al:LIPIcs.WABI.2019.7,
  author =	{Vaddadi, Kavya and Srinivasan, Rajgopal and Sivadasan, Naveen},
  title =	{{Read Mapping on Genome Variation Graphs}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{7:1--7:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.7},
  URN =		{urn:nbn:de:0030-drops-110375},
  doi =		{10.4230/LIPIcs.WABI.2019.7},
  annote =	{Keywords: read mapping, pangenome, genome variation graphs, locality sensitive hashing}
}
@InProceedings{alanko_et_al:LIPIcs.WABI.2019.8,
  author =	{Alanko, Jarno and Bannai, Hideo and Cazaux, Bastien and Peterlongo, Pierre and Stoye, Jens},
  title =	{{Finding All Maximal Perfect Haplotype Blocks in Linear Time}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{8:1--8:9},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.8},
  URN =		{urn:nbn:de:0030-drops-110388},
  doi =		{10.4230/LIPIcs.WABI.2019.8},
  annote =	{Keywords: Population genomics, selection coefficient, haplotype block, positional Burrows-Wheeler Transform}
}
@InProceedings{zoller_et_al:LIPIcs.WABI.2019.9,
  author =	{Zoller, Roni and Zehavi, Meirav and Ziv-Ukelson, Michal},
  title =	{{A New Paradigm for Identifying Reconciliation-Scenario Altering Mutations Conferring Environmental Adaptation}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{9:1--9:13},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.9},
  URN =		{urn:nbn:de:0030-drops-110398},
  doi =		{10.4230/LIPIcs.WABI.2019.9},
  annote =	{Keywords: Gene tree, Species tree, Reconciliation}
}
@InProceedings{liu_et_al:LIPIcs.WABI.2019.10,
  author =	{Liu, Jie and Huang, Yuanhao and Singh, Ritambhara and Vert, Jean-Philippe and Noble, William Stafford},
  title =	{{Jointly Embedding Multiple Single-Cell Omics Measurements}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{10:1--10:13},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.10},
  URN =		{urn:nbn:de:0030-drops-110401},
  doi =		{10.4230/LIPIcs.WABI.2019.10},
  annote =	{Keywords: Manifold alignment, single-cell sequencing}
}
@InProceedings{cauer_et_al:LIPIcs.WABI.2019.11,
  author =	{Cauer, Alexandra Gesine and Yard{\i}mc{\i}, G\"{u}rkan and Vert, Jean-Philippe and Varoquaux, Nelle and Noble, William Stafford},
  title =	{{Inferring Diploid 3D Chromatin Structures from Hi-C Data}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{11:1--11:13},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.11},
  URN =		{urn:nbn:de:0030-drops-110418},
  doi =		{10.4230/LIPIcs.WABI.2019.11},
  annote =	{Keywords: Genome 3D architecture, chromatin structure, Hi-C, 3D modeling}
}
@InProceedings{markin_et_al:LIPIcs.WABI.2019.12,
  author =	{Markin, Alexey and Eulenstein, Oliver},
  title =	{{Consensus Clusters in Robinson-Foulds Reticulation Networks}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{12:1--12:12},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.12},
  URN =		{urn:nbn:de:0030-drops-110420},
  doi =		{10.4230/LIPIcs.WABI.2019.12},
  annote =	{Keywords: Phylogenetics, phylogenetic tree, phylogenetic network, reticulation network, Robinson-Foulds, Pareto, RF-Net}
}
@InProceedings{simonaitis_et_al:LIPIcs.WABI.2019.13,
  author =	{Simonaitis, Pijus and Chateau, Annie and Swenson, Krister M.},
  title =	{{Weighted Minimum-Length Rearrangement Scenarios}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{13:1--13:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.13},
  URN =		{urn:nbn:de:0030-drops-110436},
  doi =		{10.4230/LIPIcs.WABI.2019.13},
  annote =	{Keywords: Weighted genome rearrangement, Double cut and join (DCJ), Edge switch, Minimum-weight quadrangulation}
}
@InProceedings{miladi_et_al:LIPIcs.WABI.2019.14,
  author =	{Miladi, Milad and Raden, Martin and Will, Sebastian and Backofen, Rolf},
  title =	{{Fast and Accurate Structure Probability Estimation for Simultaneous Alignment and Folding of RNAs}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{14:1--14:13},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.14},
  URN =		{urn:nbn:de:0030-drops-110446},
  doi =		{10.4230/LIPIcs.WABI.2019.14},
  annote =	{Keywords: RNA secondary structure, Structural bioinformatics, Alignment, Algorithms}
}
@InProceedings{xin_et_al:LIPIcs.WABI.2019.15,
  author =	{Xin, Hongyi and Shao, Mingfu and Kingsford, Carl},
  title =	{{Context-Aware Seeds for Read Mapping}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{15:1--15:13},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.15},
  URN =		{urn:nbn:de:0030-drops-110452},
  doi =		{10.4230/LIPIcs.WABI.2019.15},
  annote =	{Keywords: Read Mapping, Seed and Extend, Edit Distance, Suffix Trie}
}
@InProceedings{tiskin:LIPIcs.WABI.2019.16,
  author =	{Tiskin, Alexander},
  title =	{{Bounded-Length Smith-Waterman Alignment}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{16:1--16:12},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.16},
  URN =		{urn:nbn:de:0030-drops-110461},
  doi =		{10.4230/LIPIcs.WABI.2019.16},
  annote =	{Keywords: sequence alignment, local alignment, Smith, Waterman alignment, matrix searching}
}
@InProceedings{jain_et_al:LIPIcs.WABI.2019.17,
  author =	{Jain, Chirag and Zhang, Haowen and Dilthey, Alexander and Aluru, Srinivas},
  title =	{{Validating Paired-End Read Alignments in Sequence Graphs}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{17:1--17:13},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.17},
  URN =		{urn:nbn:de:0030-drops-110470},
  doi =		{10.4230/LIPIcs.WABI.2019.17},
  annote =	{Keywords: Sequence graphs, read mapping, index, sparse matrix-matrix multiplication}
}
@InProceedings{qiu_et_al:LIPIcs.WABI.2019.18,
  author =	{Qiu, Yutong and Ma, Cong and Xie, Han and Kingsford, Carl},
  title =	{{Detecting Transcriptomic Structural Variants in Heterogeneous Contexts via the Multiple Compatible Arrangements Problem}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{18:1--18:5},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.18},
  URN =		{urn:nbn:de:0030-drops-110483},
  doi =		{10.4230/LIPIcs.WABI.2019.18},
  annote =	{Keywords: transcriptomic structural variation, integer linear programming, heterogeneity}
}
@InProceedings{wang_et_al:LIPIcs.WABI.2019.19,
  author =	{Wang, Qi and Elworth, R. A. Leo and Liu, Tian Rui and Treangen, Todd J.},
  title =	{{Faster Pan-Genome Construction for Efficient Differentiation of Naturally Occurring and Engineered Plasmids with Plaster}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{19:1--19:12},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.19},
  URN =		{urn:nbn:de:0030-drops-110492},
  doi =		{10.4230/LIPIcs.WABI.2019.19},
  annote =	{Keywords: comparative genomics, sequence alignment, pan-genome, engineered plasmids}
}
@InProceedings{truszkowski_et_al:LIPIcs.WABI.2019.20,
  author =	{Truszkowski, Jakub and Gascuel, Olivier and Swenson, Krister M.},
  title =	{{Rapidly Computing the Phylogenetic Transfer Index}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{20:1--20:12},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.20},
  URN =		{urn:nbn:de:0030-drops-110505},
  doi =		{10.4230/LIPIcs.WABI.2019.20},
  annote =	{Keywords: large phylogenies, bootstrap analysis, tree comparison, data structures on trees}
}
@InProceedings{cao_et_al:LIPIcs.WABI.2019.21,
  author =	{Cao, Zhen and Zhu, Jiafan and Nakhleh, Luay},
  title =	{{Empirical Performance of Tree-Based Inference of Phylogenetic Networks}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{21:1--21:13},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.21},
  URN =		{urn:nbn:de:0030-drops-110510},
  doi =		{10.4230/LIPIcs.WABI.2019.21},
  annote =	{Keywords: Phylogenetic networks, species tree, tree-based networks, multi-locus phylogeny}
}
@InProceedings{edrisi_et_al:LIPIcs.WABI.2019.22,
  author =	{Edrisi, Mohammadamin and Zafar, Hamim and Nakhleh, Luay},
  title =	{{A Combinatorial Approach for Single-cell Variant Detection via Phylogenetic Inference}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{22:1--22:13},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.22},
  URN =		{urn:nbn:de:0030-drops-110525},
  doi =		{10.4230/LIPIcs.WABI.2019.22},
  annote =	{Keywords: Mutation calling, Single-cell sequencing, Integer linear programming, Perfect phylogeny}
}
@InProceedings{sauerwald_et_al:LIPIcs.WABI.2019.23,
  author =	{Sauerwald, Natalie and Shen, Yihang and Kingsford, Carl},
  title =	{{Topological Data Analysis Reveals Principles of Chromosome Structure in Cellular Differentiation}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{23:1--23:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.23},
  URN =		{urn:nbn:de:0030-drops-110537},
  doi =		{10.4230/LIPIcs.WABI.2019.23},
  annote =	{Keywords: topological data analysis, chromosome structure, Hi-C, topologically associating domains}
}
@InProceedings{polevikov_et_al:LIPIcs.WABI.2019.24,
  author =	{Polevikov, Evgeny and Kolmogorov, Mikhail},
  title =	{{Synteny Paths for Assembly Graphs Comparison}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{24:1--24:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.24},
  URN =		{urn:nbn:de:0030-drops-110545},
  doi =		{10.4230/LIPIcs.WABI.2019.24},
  annote =	{Keywords: Assembly graphs, Genome assembly, Synteny blocks, Comparative Genomics}
}