@Proceedings{grtz_et_al:LIPIcs.CPM.2020, title = {{LIPIcs, Volume 161, CPM 2020, Complete Volume}}, booktitle = {31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020)}, pages = {1--418}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-149-8}, ISSN = {1868-8969}, year = {2020}, volume = {161}, editor = {G{\o}rtz, Inge Li and Weimann, Oren}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2020}, URN = {urn:nbn:de:0030-drops-121245}, doi = {10.4230/LIPIcs.CPM.2020}, annote = {Keywords: LIPIcs, Volume 161, CPM 2020, Complete Volume} } @InProceedings{grtz_et_al:LIPIcs.CPM.2020.0, author = {G{\o}rtz, Inge Li and Weimann, Oren}, title = {{Front Matter, Table of Contents, Preface, Conference Organization}}, booktitle = {31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020)}, pages = {0:i--0:xvi}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-149-8}, ISSN = {1868-8969}, year = {2020}, volume = {161}, editor = {G{\o}rtz, Inge Li and Weimann, Oren}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2020.0}, URN = {urn:nbn:de:0030-drops-121252}, doi = {10.4230/LIPIcs.CPM.2020.0}, annote = {Keywords: Front Matter, Table of Contents, Preface, Conference Organization} } @InProceedings{husfeldt:LIPIcs.CPM.2020.1, author = {Husfeldt, Thore}, title = {{Algebraic Algorithms for Finding Patterns in Graphs}}, booktitle = {31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020)}, pages = {1:1--1:1}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-149-8}, ISSN = {1868-8969}, year = {2020}, volume = {161}, editor = {G{\o}rtz, Inge Li and Weimann, Oren}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2020.1}, URN = {urn:nbn:de:0030-drops-121261}, doi = {10.4230/LIPIcs.CPM.2020.1}, annote = {Keywords: paths, exterior algebra, wedge product, color-coding, parameterized complexity} } @InProceedings{alzamel_et_al:LIPIcs.CPM.2020.2, author = {Alzamel, Mai and Conte, Alessio and Denzumi, Shuhei and Grossi, Roberto and Iliopoulos, Costas S. and Kurita, Kazuhiro and Wasa, Kunihiro}, title = {{Finding the Anticover of a String}}, booktitle = {31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020)}, pages = {2:1--2:11}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-149-8}, ISSN = {1868-8969}, year = {2020}, volume = {161}, editor = {G{\o}rtz, Inge Li and Weimann, Oren}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2020.2}, URN = {urn:nbn:de:0030-drops-121270}, doi = {10.4230/LIPIcs.CPM.2020.2}, annote = {Keywords: Anticover, String algorithms, Stringology, NP-complete} } @InProceedings{amir_et_al:LIPIcs.CPM.2020.3, author = {Amir, Amihood and Butman, Ayelet and Landau, Gad M. and Marcus, Shoshana and Sokol, Dina}, title = {{Double String Tandem Repeats}}, booktitle = {31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020)}, pages = {3:1--3:13}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-149-8}, ISSN = {1868-8969}, year = {2020}, volume = {161}, editor = {G{\o}rtz, Inge Li and Weimann, Oren}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2020.3}, URN = {urn:nbn:de:0030-drops-121283}, doi = {10.4230/LIPIcs.CPM.2020.3}, annote = {Keywords: double string, tandem repeat, 2-dimensional, scale} } @InProceedings{belazzougui_et_al:LIPIcs.CPM.2020.4, author = {Belazzougui, Djamal and Kucherov, Gregory}, title = {{Efficient Tree-Structured Categorical Retrieval}}, booktitle = {31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020)}, pages = {4:1--4:11}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-149-8}, ISSN = {1868-8969}, year = {2020}, volume = {161}, editor = {G{\o}rtz, Inge Li and Weimann, Oren}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2020.4}, URN = {urn:nbn:de:0030-drops-121299}, doi = {10.4230/LIPIcs.CPM.2020.4}, annote = {Keywords: pattern matching, document retrieval, category tree, space-efficient data structures} } @InProceedings{bennun_et_al:LIPIcs.CPM.2020.5, author = {Ben-Nun, Stav and Golan, Shay and Kociumaka, Tomasz and Kraus, Matan}, title = {{Time-Space Tradeoffs for Finding a Long Common Substring}}, booktitle = {31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020)}, pages = {5:1--5:14}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-149-8}, ISSN = {1868-8969}, year = {2020}, volume = {161}, editor = {G{\o}rtz, Inge Li and Weimann, Oren}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2020.5}, URN = {urn:nbn:de:0030-drops-121302}, doi = {10.4230/LIPIcs.CPM.2020.5}, annote = {Keywords: longest common substring, time-space tradeoff, local consistency, periodicity} } @InProceedings{bernardini_et_al:LIPIcs.CPM.2020.6, author = {Bernardini, Giulia and Bonizzoni, Paola and Gawrychowski, Pawe{\l}}, title = {{On Two Measures of Distance Between Fully-Labelled Trees}}, booktitle = {31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020)}, pages = {6:1--6:16}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-149-8}, ISSN = {1868-8969}, year = {2020}, volume = {161}, editor = {G{\o}rtz, Inge Li and Weimann, Oren}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2020.6}, URN = {urn:nbn:de:0030-drops-121318}, doi = {10.4230/LIPIcs.CPM.2020.6}, annote = {Keywords: Tree distance, Cancer progression, Approximation algorithms, Fine-grained complexity} } @InProceedings{bernardini_et_al:LIPIcs.CPM.2020.7, author = {Bernardini, Giulia and Chen, Huiping and Loukides, Grigorios and Pisanti, Nadia and Pissis, Solon P. and Stougie, Leen and Sweering, Michelle}, title = {{String Sanitization Under Edit Distance}}, booktitle = {31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020)}, pages = {7:1--7:14}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-149-8}, ISSN = {1868-8969}, year = {2020}, volume = {161}, editor = {G{\o}rtz, Inge Li and Weimann, Oren}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2020.7}, URN = {urn:nbn:de:0030-drops-121324}, doi = {10.4230/LIPIcs.CPM.2020.7}, annote = {Keywords: String algorithms, data sanitization, edit distance, dynamic programming, conditional lower bound} } @InProceedings{charalampopoulos_et_al:LIPIcs.CPM.2020.8, author = {Charalampopoulos, Panagiotis and Kociumaka, Tomasz and Mohamed, Manal and Radoszewski, Jakub and Rytter, Wojciech and Straszy\'{n}ski, Juliusz and Wale\'{n}, Tomasz and Zuba, Wiktor}, title = {{Counting Distinct Patterns in Internal Dictionary Matching}}, booktitle = {31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020)}, pages = {8:1--8:15}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-149-8}, ISSN = {1868-8969}, year = {2020}, volume = {161}, editor = {G{\o}rtz, Inge Li and Weimann, Oren}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2020.8}, URN = {urn:nbn:de:0030-drops-121336}, doi = {10.4230/LIPIcs.CPM.2020.8}, annote = {Keywords: dictionary matching, internal pattern matching, squares} } @InProceedings{charalampopoulos_et_al:LIPIcs.CPM.2020.9, author = {Charalampopoulos, Panagiotis and Kociumaka, Tomasz and Mozes, Shay}, title = {{Dynamic String Alignment}}, booktitle = {31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020)}, pages = {9:1--9:13}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-149-8}, ISSN = {1868-8969}, year = {2020}, volume = {161}, editor = {G{\o}rtz, Inge Li and Weimann, Oren}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2020.9}, URN = {urn:nbn:de:0030-drops-121344}, doi = {10.4230/LIPIcs.CPM.2020.9}, annote = {Keywords: string alignment, edit distance, longest common subsequence, (unit-)Monge matrices, (min,+)-product} } @InProceedings{charalampopoulos_et_al:LIPIcs.CPM.2020.10, author = {Charalampopoulos, Panagiotis and Pissis, Solon P. and Radoszewski, Jakub and Wale\'{n}, Tomasz and Zuba, Wiktor}, title = {{Unary Words Have the Smallest Levenshtein k-Neighbourhoods}}, booktitle = {31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020)}, pages = {10:1--10:12}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-149-8}, ISSN = {1868-8969}, year = {2020}, volume = {161}, editor = {G{\o}rtz, Inge Li and Weimann, Oren}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2020.10}, URN = {urn:nbn:de:0030-drops-121359}, doi = {10.4230/LIPIcs.CPM.2020.10}, annote = {Keywords: combinatorics on words, Levenshtein distance, edit distance} } @InProceedings{commins_et_al:LIPIcs.CPM.2020.11, author = {Commins, Patty and Liben-Nowell, David and Liu, Tina and Tomlinson, Kiran}, title = {{Summarizing Diverging String Sequences, with Applications to Chain-Letter Petitions}}, booktitle = {31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020)}, pages = {11:1--11:15}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-149-8}, ISSN = {1868-8969}, year = {2020}, volume = {161}, editor = {G{\o}rtz, Inge Li and Weimann, Oren}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2020.11}, URN = {urn:nbn:de:0030-drops-121367}, doi = {10.4230/LIPIcs.CPM.2020.11}, annote = {Keywords: edit distance, tree reconstruction, information propagation, chain letters} } @InProceedings{funakoshi_et_al:LIPIcs.CPM.2020.12, author = {Funakoshi, Mitsuru and Nakashima, Yuto and Inenaga, Shunsuke and Bannai, Hideo and Takeda, Masayuki and Shinohara, Ayumi}, title = {{Detecting k-(Sub-)Cadences and Equidistant Subsequence Occurrences}}, booktitle = {31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020)}, pages = {12:1--12:11}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-149-8}, ISSN = {1868-8969}, year = {2020}, volume = {161}, editor = {G{\o}rtz, Inge Li and Weimann, Oren}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2020.12}, URN = {urn:nbn:de:0030-drops-121375}, doi = {10.4230/LIPIcs.CPM.2020.12}, annote = {Keywords: string algorithms, pattern matching, bit parallelism, subsequences, cadences} } @InProceedings{ganguly_et_al:LIPIcs.CPM.2020.13, author = {Ganguly, Arnab and Gibney, Daniel and Hooshmand, Sahar and K\"{u}lekci, M. O\u{g}uzhan and Thankachan, Sharma V.}, title = {{FM-Index Reveals the Reverse Suffix Array}}, booktitle = {31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020)}, pages = {13:1--13:14}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-149-8}, ISSN = {1868-8969}, year = {2020}, volume = {161}, editor = {G{\o}rtz, Inge Li and Weimann, Oren}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2020.13}, URN = {urn:nbn:de:0030-drops-121388}, doi = {10.4230/LIPIcs.CPM.2020.13}, annote = {Keywords: Data Structures, Suffix Trees, String Algorithms, Compression, Burrows - Wheeler transform, FM-Index} } @InProceedings{gawrychowski_et_al:LIPIcs.CPM.2020.14, author = {Gawrychowski, Pawe{\l} and Ghazawi, Samah and Landau, Gad M.}, title = {{On Indeterminate Strings Matching}}, booktitle = {31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020)}, pages = {14:1--14:14}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-149-8}, ISSN = {1868-8969}, year = {2020}, volume = {161}, editor = {G{\o}rtz, Inge Li and Weimann, Oren}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2020.14}, URN = {urn:nbn:de:0030-drops-121393}, doi = {10.4230/LIPIcs.CPM.2020.14}, annote = {Keywords: string matching, indeterminate strings, Cartesian trees, order-preserving matching, parameterized matching} } @InProceedings{golan_et_al:LIPIcs.CPM.2020.15, author = {Golan, Shay and Kociumaka, Tomasz and Kopelowitz, Tsvi and Porat, Ely}, title = {{The Streaming k-Mismatch Problem: Tradeoffs Between Space and Total Time}}, booktitle = {31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020)}, pages = {15:1--15:15}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-149-8}, ISSN = {1868-8969}, year = {2020}, volume = {161}, editor = {G{\o}rtz, Inge Li and Weimann, Oren}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2020.15}, URN = {urn:nbn:de:0030-drops-121406}, doi = {10.4230/LIPIcs.CPM.2020.15}, annote = {Keywords: Streaming pattern matching, Hamming distance, k-mismatch} } @InProceedings{gourdel_et_al:LIPIcs.CPM.2020.16, author = {Gourdel, Garance and Kociumaka, Tomasz and Radoszewski, Jakub and Starikovskaya, Tatiana}, title = {{Approximating Longest Common Substring with k mismatches: Theory and Practice}}, booktitle = {31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020)}, pages = {16:1--16:15}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-149-8}, ISSN = {1868-8969}, year = {2020}, volume = {161}, editor = {G{\o}rtz, Inge Li and Weimann, Oren}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2020.16}, URN = {urn:nbn:de:0030-drops-121410}, doi = {10.4230/LIPIcs.CPM.2020.16}, annote = {Keywords: approximation algorithms, string similarity, LSH, conditional lower bounds} } @InProceedings{gruttemeier_et_al:LIPIcs.CPM.2020.17, author = {Gr\"{u}ttemeier, Niels and Komusiewicz, Christian and Morawietz, Nils and Sommer, Frank}, title = {{String Factorizations Under Various Collision Constraints}}, booktitle = {31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020)}, pages = {17:1--17:14}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-149-8}, ISSN = {1868-8969}, year = {2020}, volume = {161}, editor = {G{\o}rtz, Inge Li and Weimann, Oren}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2020.17}, URN = {urn:nbn:de:0030-drops-121428}, doi = {10.4230/LIPIcs.CPM.2020.17}, annote = {Keywords: NP-hard problem, fixed-parameter algorithms, collision-aware string partitioning} } @InProceedings{kedzierski_et_al:LIPIcs.CPM.2020.18, author = {K\k{e}dzierski, Aleksander and Radoszewski, Jakub}, title = {{k-Approximate Quasiperiodicity under Hamming and Edit Distance}}, booktitle = {31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020)}, pages = {18:1--18:15}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-149-8}, ISSN = {1868-8969}, year = {2020}, volume = {161}, editor = {G{\o}rtz, Inge Li and Weimann, Oren}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2020.18}, URN = {urn:nbn:de:0030-drops-121437}, doi = {10.4230/LIPIcs.CPM.2020.18}, annote = {Keywords: approximate cover, approximate seed, enhanced cover, Hamming distance, edit distance} } @InProceedings{kipouridis_et_al:LIPIcs.CPM.2020.19, author = {Kipouridis, Evangelos and Tsichlas, Kostas}, title = {{Longest Common Subsequence on Weighted Sequences}}, booktitle = {31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020)}, pages = {19:1--19:15}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-149-8}, ISSN = {1868-8969}, year = {2020}, volume = {161}, editor = {G{\o}rtz, Inge Li and Weimann, Oren}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2020.19}, URN = {urn:nbn:de:0030-drops-121443}, doi = {10.4230/LIPIcs.CPM.2020.19}, annote = {Keywords: WLCS, LCS, weighted sequences, approximation algorithms, lower bound} } @InProceedings{koana_et_al:LIPIcs.CPM.2020.20, author = {Koana, Tomohiro and Froese, Vincent and Niedermeier, Rolf}, title = {{Parameterized Algorithms for Matrix Completion with Radius Constraints}}, booktitle = {31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020)}, pages = {20:1--20:14}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-149-8}, ISSN = {1868-8969}, year = {2020}, volume = {161}, editor = {G{\o}rtz, Inge Li and Weimann, Oren}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2020.20}, URN = {urn:nbn:de:0030-drops-121456}, doi = {10.4230/LIPIcs.CPM.2020.20}, annote = {Keywords: fixed-parameter tractability, consensus string problems, Closest String, Closest String with Wildcards} } @InProceedings{koppl_et_al:LIPIcs.CPM.2020.21, author = {K\"{o}ppl, Dominik and Hashimoto, Daiki and Hendrian, Diptarama and Shinohara, Ayumi}, title = {{In-Place Bijective Burrows-Wheeler Transforms}}, booktitle = {31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020)}, pages = {21:1--21:15}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-149-8}, ISSN = {1868-8969}, year = {2020}, volume = {161}, editor = {G{\o}rtz, Inge Li and Weimann, Oren}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2020.21}, URN = {urn:nbn:de:0030-drops-121463}, doi = {10.4230/LIPIcs.CPM.2020.21}, annote = {Keywords: In-Place Algorithms, Burrows-Wheeler transform, Lyndon words} } @InProceedings{lafond_et_al:LIPIcs.CPM.2020.22, author = {Lafond, Manuel and Zhu, Binhai and Zou, Peng}, title = {{Genomic Problems Involving Copy Number Profiles: Complexity and Algorithms}}, booktitle = {31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020)}, pages = {22:1--22:15}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-149-8}, ISSN = {1868-8969}, year = {2020}, volume = {161}, editor = {G{\o}rtz, Inge Li and Weimann, Oren}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2020.22}, URN = {urn:nbn:de:0030-drops-121471}, doi = {10.4230/LIPIcs.CPM.2020.22}, annote = {Keywords: Computational genomics, cancer genomics, copy number profiles, NP-hardness, approximation algorithms, FPT algorithms} } @InProceedings{matsuda_et_al:LIPIcs.CPM.2020.23, author = {Matsuda, Kotaro and Sadakane, Kunihiko and Starikovskaya, Tatiana and Tateshita, Masakazu}, title = {{Compressed Orthogonal Search on Suffix Arrays with Applications to Range LCP}}, booktitle = {31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020)}, pages = {23:1--23:13}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-149-8}, ISSN = {1868-8969}, year = {2020}, volume = {161}, editor = {G{\o}rtz, Inge Li and Weimann, Oren}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2020.23}, URN = {urn:nbn:de:0030-drops-121482}, doi = {10.4230/LIPIcs.CPM.2020.23}, annote = {Keywords: Orthogonal Range Search, Succinct Data Structure, Suffix Array} } @InProceedings{munro_et_al:LIPIcs.CPM.2020.24, author = {Munro, J. Ian and Navarro, Gonzalo and Nekrich, Yakov}, title = {{Text Indexing and Searching in Sublinear Time}}, booktitle = {31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020)}, pages = {24:1--24:15}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-149-8}, ISSN = {1868-8969}, year = {2020}, volume = {161}, editor = {G{\o}rtz, Inge Li and Weimann, Oren}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2020.24}, URN = {urn:nbn:de:0030-drops-121497}, doi = {10.4230/LIPIcs.CPM.2020.24}, annote = {Keywords: data structures, string indexes} } @InProceedings{makinen_et_al:LIPIcs.CPM.2020.25, author = {M\"{a}kinen, Veli and Sahlin, Kristoffer}, title = {{Chaining with Overlaps Revisited}}, booktitle = {31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020)}, pages = {25:1--25:12}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-149-8}, ISSN = {1868-8969}, year = {2020}, volume = {161}, editor = {G{\o}rtz, Inge Li and Weimann, Oren}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2020.25}, URN = {urn:nbn:de:0030-drops-121500}, doi = {10.4230/LIPIcs.CPM.2020.25}, annote = {Keywords: Sparse Dynamic Programming, Chaining, Maximal Exact Matches, Longest Common Subsequence} } @InProceedings{nakashima_et_al:LIPIcs.CPM.2020.26, author = {Nakashima, Katsuhito and Fujisato, Noriki and Hendrian, Diptarama and Nakashima, Yuto and Yoshinaka, Ryo and Inenaga, Shunsuke and Bannai, Hideo and Shinohara, Ayumi and Takeda, Masayuki}, title = {{DAWGs for Parameterized Matching: Online Construction and Related Indexing Structures}}, booktitle = {31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020)}, pages = {26:1--26:14}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-149-8}, ISSN = {1868-8969}, year = {2020}, volume = {161}, editor = {G{\o}rtz, Inge Li and Weimann, Oren}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2020.26}, URN = {urn:nbn:de:0030-drops-121512}, doi = {10.4230/LIPIcs.CPM.2020.26}, annote = {Keywords: parameterized matching, suffix trees, DAWGs, suffix automata} } @InProceedings{papelange:LIPIcs.CPM.2020.27, author = {Pape-Lange, Julian}, title = {{On Extensions of Maximal Repeats in Compressed Strings}}, booktitle = {31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020)}, pages = {27:1--27:13}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-149-8}, ISSN = {1868-8969}, year = {2020}, volume = {161}, editor = {G{\o}rtz, Inge Li and Weimann, Oren}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2020.27}, URN = {urn:nbn:de:0030-drops-121523}, doi = {10.4230/LIPIcs.CPM.2020.27}, annote = {Keywords: Maximal repeats, Extensions of maximal repeats, Combinatorics on compressed strings, LZ77, Burrows-Wheeler transform, Burrows-Wheeler transform conjecture, Compact suffix automata, CDAWGs} } @InProceedings{schaar_et_al:LIPIcs.CPM.2020.28, author = {Schaar, Nathan and Froese, Vincent and Niedermeier, Rolf}, title = {{Faster Binary Mean Computation Under Dynamic Time Warping}}, booktitle = {31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020)}, pages = {28:1--28:13}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-149-8}, ISSN = {1868-8969}, year = {2020}, volume = {161}, editor = {G{\o}rtz, Inge Li and Weimann, Oren}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2020.28}, URN = {urn:nbn:de:0030-drops-121538}, doi = {10.4230/LIPIcs.CPM.2020.28}, annote = {Keywords: consensus string problems, time series averaging, minimum 1-separated sum, sparse strings} } @InProceedings{uznanski:LIPIcs.CPM.2020.29, author = {Uzna\'{n}ski, Przemys{\l}aw}, title = {{Approximating Text-To-Pattern Distance via Dimensionality Reduction}}, booktitle = {31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020)}, pages = {29:1--29:11}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-149-8}, ISSN = {1868-8969}, year = {2020}, volume = {161}, editor = {G{\o}rtz, Inge Li and Weimann, Oren}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2020.29}, URN = {urn:nbn:de:0030-drops-121542}, doi = {10.4230/LIPIcs.CPM.2020.29}, annote = {Keywords: Approximate Pattern Matching, 𝓁₂ Distance, 𝓁₁ Distance, Hamming Distance, Approximation Algorithms, Combinatorial Algorithms} }