@Proceedings{kingsford_et_al:LIPIcs.WABI.2020,
  title =	{{LIPIcs, Volume 172, WABI 2020, Complete Volume}},
  booktitle =	{20th International Workshop on Algorithms in Bioinformatics (WABI 2020)},
  pages =	{1--360},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-161-0},
  ISSN =	{1868-8969},
  year =	{2020},
  volume =	{172},
  editor =	{Kingsford, Carl and Pisanti, Nadia},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2020},
  URN =		{urn:nbn:de:0030-drops-127881},
  doi =		{10.4230/LIPIcs.WABI.2020},
  annote =	{Keywords: LIPIcs, Volume 172, WABI 2020, Complete Volume}
}
@InProceedings{kingsford_et_al:LIPIcs.WABI.2020.0,
  author =	{Kingsford, Carl and Pisanti, Nadia},
  title =	{{Front Matter, Table of Contents, Preface, Conference Organization}},
  booktitle =	{20th International Workshop on Algorithms in Bioinformatics (WABI 2020)},
  pages =	{0:i--0:x},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-161-0},
  ISSN =	{1868-8969},
  year =	{2020},
  volume =	{172},
  editor =	{Kingsford, Carl and Pisanti, Nadia},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2020.0},
  URN =		{urn:nbn:de:0030-drops-127891},
  doi =		{10.4230/LIPIcs.WABI.2020.0},
  annote =	{Keywords: Front Matter, Table of Contents, Preface, Conference Organization}
}
@InProceedings{zimerman_et_al:LIPIcs.WABI.2020.1,
  author =	{Zimerman, Galia R. and Svetlitsky, Dina and Zehavi, Meirav and Ziv-Ukelson, Michal},
  title =	{{Approximate Search for Known Gene Clusters in New Genomes Using PQ-Trees}},
  booktitle =	{20th International Workshop on Algorithms in Bioinformatics (WABI 2020)},
  pages =	{1:1--1:24},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-161-0},
  ISSN =	{1868-8969},
  year =	{2020},
  volume =	{172},
  editor =	{Kingsford, Carl and Pisanti, Nadia},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2020.1},
  URN =		{urn:nbn:de:0030-drops-127906},
  doi =		{10.4230/LIPIcs.WABI.2020.1},
  annote =	{Keywords: PQ-Tree, Gene Cluster, Efflux Pump}
}
@InProceedings{zabeti_et_al:LIPIcs.WABI.2020.2,
  author =	{Zabeti, Hooman and Dexter, Nick and Safari, Amir Hosein and Sedaghat, Nafiseh and Libbrecht, Maxwell and Chindelevitch, Leonid},
  title =	{{An Interpretable Classification Method for Predicting Drug Resistance in M. Tuberculosis}},
  booktitle =	{20th International Workshop on Algorithms in Bioinformatics (WABI 2020)},
  pages =	{2:1--2:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-161-0},
  ISSN =	{1868-8969},
  year =	{2020},
  volume =	{172},
  editor =	{Kingsford, Carl and Pisanti, Nadia},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2020.2},
  URN =		{urn:nbn:de:0030-drops-127911},
  doi =		{10.4230/LIPIcs.WABI.2020.2},
  annote =	{Keywords: Drug resistance, whole-genome sequencing, interpretable machine learning, integer linear programming, rule-based learning}
}
@InProceedings{rubert_et_al:LIPIcs.WABI.2020.3,
  author =	{Rubert, Diego P. and Martinez, F\'{a}bio V. and Braga, Mar{\'\i}lia D. V.},
  title =	{{Natural Family-Free Genomic Distance}},
  booktitle =	{20th International Workshop on Algorithms in Bioinformatics (WABI 2020)},
  pages =	{3:1--3:23},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-161-0},
  ISSN =	{1868-8969},
  year =	{2020},
  volume =	{172},
  editor =	{Kingsford, Carl and Pisanti, Nadia},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2020.3},
  URN =		{urn:nbn:de:0030-drops-127926},
  doi =		{10.4230/LIPIcs.WABI.2020.3},
  annote =	{Keywords: Comparative genomics, Genome rearrangement, DCJ-indel distance}
}
@InProceedings{zentgraf_et_al:LIPIcs.WABI.2020.4,
  author =	{Zentgraf, Jens and Rahmann, Sven},
  title =	{{Fast Lightweight Accurate Xenograft Sorting}},
  booktitle =	{20th International Workshop on Algorithms in Bioinformatics (WABI 2020)},
  pages =	{4:1--4:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-161-0},
  ISSN =	{1868-8969},
  year =	{2020},
  volume =	{172},
  editor =	{Kingsford, Carl and Pisanti, Nadia},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2020.4},
  URN =		{urn:nbn:de:0030-drops-127933},
  doi =		{10.4230/LIPIcs.WABI.2020.4},
  annote =	{Keywords: xenograft sorting, alignment-free method, Cuckoo hashing, k-mer}
}
@InProceedings{weber_et_al:LIPIcs.WABI.2020.5,
  author =	{Weber, Leah L. and El-Kebir, Mohammed},
  title =	{{Phyolin: Identifying a Linear Perfect Phylogeny in Single-Cell DNA Sequencing Data of Tumors}},
  booktitle =	{20th International Workshop on Algorithms in Bioinformatics (WABI 2020)},
  pages =	{5:1--5:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-161-0},
  ISSN =	{1868-8969},
  year =	{2020},
  volume =	{172},
  editor =	{Kingsford, Carl and Pisanti, Nadia},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2020.5},
  URN =		{urn:nbn:de:0030-drops-127946},
  doi =		{10.4230/LIPIcs.WABI.2020.5},
  annote =	{Keywords: Constraint programming, intra-tumor heterogeneity, combinatorial optimization}
}
@InProceedings{schrinner_et_al:LIPIcs.WABI.2020.6,
  author =	{Schrinner, Sven and Goel, Manish and Wulfert, Michael and Spohr, Philipp and Schneeberger, Korbinian and Klau, Gunnar W.},
  title =	{{The Longest Run Subsequence Problem}},
  booktitle =	{20th International Workshop on Algorithms in Bioinformatics (WABI 2020)},
  pages =	{6:1--6:13},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-161-0},
  ISSN =	{1868-8969},
  year =	{2020},
  volume =	{172},
  editor =	{Kingsford, Carl and Pisanti, Nadia},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2020.6},
  URN =		{urn:nbn:de:0030-drops-127951},
  doi =		{10.4230/LIPIcs.WABI.2020.6},
  annote =	{Keywords: alignments, assembly, string algorithm, longest subsequence}
}
@InProceedings{makinen_et_al:LIPIcs.WABI.2020.7,
  author =	{M\"{a}kinen, Veli and Cazaux, Bastien and Equi, Massimo and Norri, Tuukka and Tomescu, Alexandru I.},
  title =	{{Linear Time Construction of Indexable Founder Block Graphs}},
  booktitle =	{20th International Workshop on Algorithms in Bioinformatics (WABI 2020)},
  pages =	{7:1--7:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-161-0},
  ISSN =	{1868-8969},
  year =	{2020},
  volume =	{172},
  editor =	{Kingsford, Carl and Pisanti, Nadia},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2020.7},
  URN =		{urn:nbn:de:0030-drops-127961},
  doi =		{10.4230/LIPIcs.WABI.2020.7},
  annote =	{Keywords: Pangenome indexing, founder reconstruction, multiple sequence alignment, compressed data structures, string matching}
}
@InProceedings{mallawaarachchi_et_al:LIPIcs.WABI.2020.8,
  author =	{Mallawaarachchi, Vijini G. and Wickramarachchi, Anuradha S. and Lin, Yu},
  title =	{{GraphBin2: Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs}},
  booktitle =	{20th International Workshop on Algorithms in Bioinformatics (WABI 2020)},
  pages =	{8:1--8:21},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-161-0},
  ISSN =	{1868-8969},
  year =	{2020},
  volume =	{172},
  editor =	{Kingsford, Carl and Pisanti, Nadia},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2020.8},
  URN =		{urn:nbn:de:0030-drops-127974},
  doi =		{10.4230/LIPIcs.WABI.2020.8},
  annote =	{Keywords: Metagenomics binning, contigs, assembly graphs, overlapped binning}
}
@InProceedings{mukherjee_et_al:LIPIcs.WABI.2020.9,
  author =	{Mukherjee, Kingshuk and Rossi, Massimiliano and Salmela, Leena and Boucher, Christina},
  title =	{{Fast and Efficient Rmap Assembly Using the Bi-Labelled de Bruijn Graph}},
  booktitle =	{20th International Workshop on Algorithms in Bioinformatics (WABI 2020)},
  pages =	{9:1--9:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-161-0},
  ISSN =	{1868-8969},
  year =	{2020},
  volume =	{172},
  editor =	{Kingsford, Carl and Pisanti, Nadia},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2020.9},
  URN =		{urn:nbn:de:0030-drops-127982},
  doi =		{10.4230/LIPIcs.WABI.2020.9},
  annote =	{Keywords: optical maps, de Bruijn graph, assembly}
}
@InProceedings{gatter_et_al:LIPIcs.WABI.2020.10,
  author =	{Gatter, Thomas and von L\"{o}hneysen, Sarah and Drozdova, Polina and Hartmann, Tom and Stadler, Peter F.},
  title =	{{Economic Genome Assembly from Low Coverage Illumina and Nanopore Data}},
  booktitle =	{20th International Workshop on Algorithms in Bioinformatics (WABI 2020)},
  pages =	{10:1--10:22},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-161-0},
  ISSN =	{1868-8969},
  year =	{2020},
  volume =	{172},
  editor =	{Kingsford, Carl and Pisanti, Nadia},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2020.10},
  URN =		{urn:nbn:de:0030-drops-127991},
  doi =		{10.4230/LIPIcs.WABI.2020.10},
  annote =	{Keywords: Nanopore sequencing, Illumina sequencing, genome assembly, spanning tree, unitigs, anchors}
}
@InProceedings{dufresne_et_al:LIPIcs.WABI.2020.11,
  author =	{Dufresne, Yoann and Sun, Chen and Marijon, Pierre and Lavenier, Dominique and Chauve, Cedric and Chikhi, Rayan},
  title =	{{A Graph-Theoretic Barcode Ordering Model for Linked-Reads}},
  booktitle =	{20th International Workshop on Algorithms in Bioinformatics (WABI 2020)},
  pages =	{11:1--11:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-161-0},
  ISSN =	{1868-8969},
  year =	{2020},
  volume =	{172},
  editor =	{Kingsford, Carl and Pisanti, Nadia},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2020.11},
  URN =		{urn:nbn:de:0030-drops-128001},
  doi =		{10.4230/LIPIcs.WABI.2020.11},
  annote =	{Keywords: DNA sequencing, graph algorithms, linked-reads, interval graphs, cliques}
}
@InProceedings{ma_et_al:LIPIcs.WABI.2020.12,
  author =	{Ma, Cong and Zheng, Hongyu and Kingsford, Carl},
  title =	{{Exact Transcript Quantification Over Splice Graphs}},
  booktitle =	{20th International Workshop on Algorithms in Bioinformatics (WABI 2020)},
  pages =	{12:1--12:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-161-0},
  ISSN =	{1868-8969},
  year =	{2020},
  volume =	{172},
  editor =	{Kingsford, Carl and Pisanti, Nadia},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2020.12},
  URN =		{urn:nbn:de:0030-drops-128013},
  doi =		{10.4230/LIPIcs.WABI.2020.12},
  annote =	{Keywords: RNA-seq, alternative splicing, transcript quantification, splice graph, network flow}
}
@InProceedings{selbach_et_al:LIPIcs.WABI.2020.13,
  author =	{Selbach, Leonie and Kowalski, Tobias and Gerwert, Klaus and Buchin, Maike and Mosig, Axel},
  title =	{{Shape Decomposition Algorithms for Laser Capture Microdissection}},
  booktitle =	{20th International Workshop on Algorithms in Bioinformatics (WABI 2020)},
  pages =	{13:1--13:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-161-0},
  ISSN =	{1868-8969},
  year =	{2020},
  volume =	{172},
  editor =	{Kingsford, Carl and Pisanti, Nadia},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2020.13},
  URN =		{urn:nbn:de:0030-drops-128020},
  doi =		{10.4230/LIPIcs.WABI.2020.13},
  annote =	{Keywords: Laser capture microdissection, shape decomposition, skeletonization}
}
@InProceedings{jahn_et_al:LIPIcs.WABI.2020.14,
  author =	{Jahn, Katharina and Beerenwinkel, Niko and Zhang, Louxin},
  title =	{{The Bourque Distances for Mutation Trees of Cancers}},
  booktitle =	{20th International Workshop on Algorithms in Bioinformatics (WABI 2020)},
  pages =	{14:1--14:22},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-161-0},
  ISSN =	{1868-8969},
  year =	{2020},
  volume =	{172},
  editor =	{Kingsford, Carl and Pisanti, Nadia},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2020.14},
  URN =		{urn:nbn:de:0030-drops-128039},
  doi =		{10.4230/LIPIcs.WABI.2020.14},
  annote =	{Keywords: mutation trees, clonal trees, tree distance, phylogenetic trees, tree metric, Robinson - Foulds distance, Bourque distance}
}
@InProceedings{yu_et_al:LIPIcs.WABI.2020.15,
  author =	{Yu, Xilin and Le, Thien and Christensen, Sarah and Molloy, Erin K. and Warnow, Tandy},
  title =	{{Advancing Divide-And-Conquer Phylogeny Estimation Using Robinson-Foulds Supertrees}},
  booktitle =	{20th International Workshop on Algorithms in Bioinformatics (WABI 2020)},
  pages =	{15:1--15:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-161-0},
  ISSN =	{1868-8969},
  year =	{2020},
  volume =	{172},
  editor =	{Kingsford, Carl and Pisanti, Nadia},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2020.15},
  URN =		{urn:nbn:de:0030-drops-128048},
  doi =		{10.4230/LIPIcs.WABI.2020.15},
  annote =	{Keywords: supertrees, divide-and-conquer, phylogeny estimation}
}
@InProceedings{rahman_et_al:LIPIcs.WABI.2020.16,
  author =	{Rahman, Amatur and Chikhi, Rayan and Medvedev, Paul},
  title =	{{Disk Compression of k-mer Sets}},
  booktitle =	{20th International Workshop on Algorithms in Bioinformatics (WABI 2020)},
  pages =	{16:1--16:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-161-0},
  ISSN =	{1868-8969},
  year =	{2020},
  volume =	{172},
  editor =	{Kingsford, Carl and Pisanti, Nadia},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2020.16},
  URN =		{urn:nbn:de:0030-drops-128057},
  doi =		{10.4230/LIPIcs.WABI.2020.16},
  annote =	{Keywords: de Bruijn graphs, compression, k-mer sets, spectrum-preserving string sets}
}
@InProceedings{ganesh_et_al:LIPIcs.WABI.2020.17,
  author =	{Ganesh, Arun and Sy, Aaron},
  title =	{{Near-Linear Time Edit Distance for Indel Channels}},
  booktitle =	{20th International Workshop on Algorithms in Bioinformatics (WABI 2020)},
  pages =	{17:1--17:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-161-0},
  ISSN =	{1868-8969},
  year =	{2020},
  volume =	{172},
  editor =	{Kingsford, Carl and Pisanti, Nadia},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2020.17},
  URN =		{urn:nbn:de:0030-drops-128061},
  doi =		{10.4230/LIPIcs.WABI.2020.17},
  annote =	{Keywords: edit distance, average-case analysis, dynamic programming, sequence alignment}
}
@InProceedings{frisby_et_al:LIPIcs.WABI.2020.18,
  author =	{Frisby, Trevor S. and Langmead, Christopher J.},
  title =	{{Fold Family-Regularized Bayesian Optimization for Directed Protein Evolution}},
  booktitle =	{20th International Workshop on Algorithms in Bioinformatics (WABI 2020)},
  pages =	{18:1--18:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-161-0},
  ISSN =	{1868-8969},
  year =	{2020},
  volume =	{172},
  editor =	{Kingsford, Carl and Pisanti, Nadia},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2020.18},
  URN =		{urn:nbn:de:0030-drops-128077},
  doi =		{10.4230/LIPIcs.WABI.2020.18},
  annote =	{Keywords: Protein design, Bayesian Optimization, Gaussian Process Regression, Regularization}
}
@InProceedings{cantone_et_al:LIPIcs.WABI.2020.19,
  author =	{Cantone, Domenico and Faro, Simone and Pavone, Arianna},
  title =	{{Sequence Searching Allowing for Non-Overlapping Adjacent Unbalanced Translocations}},
  booktitle =	{20th International Workshop on Algorithms in Bioinformatics (WABI 2020)},
  pages =	{19:1--19:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-161-0},
  ISSN =	{1868-8969},
  year =	{2020},
  volume =	{172},
  editor =	{Kingsford, Carl and Pisanti, Nadia},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2020.19},
  URN =		{urn:nbn:de:0030-drops-128086},
  doi =		{10.4230/LIPIcs.WABI.2020.19},
  annote =	{Keywords: Text processing, approximate matching, inversions, sequence matching}
}