LIPIcs, Volume 201, WABI 2021
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Alessandra Carbone and Mohammed El-Kebir
LIPIcs, Volume 201, WABI 2021, Complete Volume
10.4230/LIPIcs.WABI.2021
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Alessandra Carbone and Mohammed El-Kebir
Front Matter, Table of Contents, Preface, Conference Organization
10.4230/LIPIcs.WABI.2021.0
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Matthew LeMay, Yi-Chieh Wu, and Ran Libeskind-Hadas
The Most Parsimonious Reconciliation Problem in the Presence of Incomplete Lineage Sorting and Hybridization Is NP-Hard
10.4230/LIPIcs.WABI.2021.1
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Yoshiki Nakagawa, Satsuya Ohata, and Kana Shimizu
Efficient Privacy-Preserving Variable-Length Substring Match for Genome Sequence
10.4230/LIPIcs.WABI.2021.2
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Yishu Wang, Arnaud Mary, Marie-France Sagot, and Blerina Sinaimeri
Making Sense of a Cophylogeny Output: Efficient Listing of Representative Reconciliations
10.4230/LIPIcs.WABI.2021.3
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Jason Fan, Skylar Chan, and Rob Patro
Perplexity: Evaluating Transcript Abundance Estimation in the Absence of Ground Truth
10.4230/LIPIcs.WABI.2021.4
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Nicolas Boria, Laurent Gourvès, Vangelis Th. Paschos, and Jérôme Monnot
The Maximum Duo-Preservation String Mapping Problem with Bounded Alphabet
10.4230/LIPIcs.WABI.2021.5
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Celine Scornavacca and Mathias Weller
Treewidth-Based Algorithms for the Small Parsimony Problem on Networks
10.4230/LIPIcs.WABI.2021.6
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Bertrand Marchand, Yann Ponty, and Laurent Bulteau
Tree Diet: Reducing the Treewidth to Unlock FPT Algorithms in RNA Bioinformatics
10.4230/LIPIcs.WABI.2021.7
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Yoshihiro Shibuya, Djamal Belazzougui, and Gregory Kucherov
Space-Efficient Representation of Genomic k-Mer Count Tables
10.4230/LIPIcs.WABI.2021.8
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Palash Sashittal, Simone Zaccaria, and Mohammed El-Kebir
Parsimonious Clone Tree Reconciliation in Cancer
10.4230/LIPIcs.WABI.2021.9
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Brandon Jew, Jiajin Li, Sriram Sankararaman, and Jae Hoon Sul
An Efficient Linear Mixed Model Framework for Meta-Analytic Association Studies Across Multiple Contexts
10.4230/LIPIcs.WABI.2021.10
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Anuradha Wickramarachchi and Yu Lin
LRBinner: Binning Long Reads in Metagenomics Datasets
10.4230/LIPIcs.WABI.2021.11
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Kazushi Kitaya and Tetsuo Shibuya
Compression of Multiple k-Mer Sets by Iterative SPSS Decomposition
10.4230/LIPIcs.WABI.2021.12
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Travis Gagie, Garance Gourdel, and Giovanni Manzini
Compressing and Indexing Aligned Readsets
10.4230/LIPIcs.WABI.2021.13
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Ali Ebrahimpour-Boroojeny, Sanjay Rajopadhye, and Hamidreza Chitsaz
BPPart: RNA-RNA Interaction Partition Function in the Absence of Entropy
10.4230/LIPIcs.WABI.2021.14
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Hamza Išerić, Can Alkan, Faraz Hach, and Ibrahim Numanagić
BISER: Fast Characterization of Segmental Duplication Structure in Multiple Genome Assemblies
10.4230/LIPIcs.WABI.2021.15
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Lucia Williams, Alexandru I. Tomescu, and Brendan Mumey
Flow Decomposition with Subpath Constraints
10.4230/LIPIcs.WABI.2021.16
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Marcin Wawerka, Dawid Dąbkowski, Natalia Rutecka, Agnieszka Mykowiecka, and Paweł Górecki
Conflict Resolution Algorithms for Deep Coalescence Phylogenetic Networks
10.4230/LIPIcs.WABI.2021.17
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Ron Zeira, Geoffrey Mon, and Benjamin J. Raphael
Genome Halving and Aliquoting Under the Copy Number Distance
10.4230/LIPIcs.WABI.2021.18
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Ardalan Naseri, William Yue, Shaojie Zhang, and Degui Zhi
Efficient Haplotype Block Matching in Bi-Directional PBWT
10.4230/LIPIcs.WABI.2021.19
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Spencer Krieger and John Kececioglu
Fast Approximate Shortest Hyperpaths for Inferring Pathways in Cell Signaling Hypergraphs
10.4230/LIPIcs.WABI.2021.20