@Proceedings{boucher_et_al:LIPIcs.WABI.2022,
  title =	{{LIPIcs, Volume 242, WABI 2022, Complete Volume}},
  booktitle =	{22nd International Workshop on Algorithms in Bioinformatics (WABI 2022)},
  pages =	{1--474},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-243-3},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{242},
  editor =	{Boucher, Christina and Rahmann, Sven},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2022},
  URN =		{urn:nbn:de:0030-drops-170338},
  doi =		{10.4230/LIPIcs.WABI.2022},
  annote =	{Keywords: LIPIcs, Volume 242, WABI 2022, Complete Volume}
}
@InProceedings{boucher_et_al:LIPIcs.WABI.2022.0,
  author =	{Boucher, Christina and Rahmann, Sven},
  title =	{{Front Matter, Table of Contents, Preface, Conference Organization}},
  booktitle =	{22nd International Workshop on Algorithms in Bioinformatics (WABI 2022)},
  pages =	{0:i--0:xii},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-243-3},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{242},
  editor =	{Boucher, Christina and Rahmann, Sven},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2022.0},
  URN =		{urn:nbn:de:0030-drops-170347},
  doi =		{10.4230/LIPIcs.WABI.2022.0},
  annote =	{Keywords: Front Matter, Table of Contents, Preface, Conference Organization}
}
@InProceedings{salmela:LIPIcs.WABI.2022.1,
  author =	{Salmela, Leena},
  title =	{{Efficient Solutions to Biological Problems Using de Bruijn Graphs}},
  booktitle =	{22nd International Workshop on Algorithms in Bioinformatics (WABI 2022)},
  pages =	{1:1--1:2},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-243-3},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{242},
  editor =	{Boucher, Christina and Rahmann, Sven},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2022.1},
  URN =		{urn:nbn:de:0030-drops-170357},
  doi =		{10.4230/LIPIcs.WABI.2022.1},
  annote =	{Keywords: de Bruijn graph, variable order de Bruijn graph, genome assembly, sequencing error correction, k-mers}
}
@InProceedings{schmidt_et_al:LIPIcs.WABI.2022.2,
  author =	{Schmidt, Sebastian and Alanko, Jarno N.},
  title =	{{Eulertigs: Minimum Plain Text Representation of k-mer Sets Without Repetitions in Linear Time}},
  booktitle =	{22nd International Workshop on Algorithms in Bioinformatics (WABI 2022)},
  pages =	{2:1--2:21},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-243-3},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{242},
  editor =	{Boucher, Christina and Rahmann, Sven},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2022.2},
  URN =		{urn:nbn:de:0030-drops-170361},
  doi =		{10.4230/LIPIcs.WABI.2022.2},
  annote =	{Keywords: Spectrum preserving string sets, Eulerian cycle, Suffix tree, Bidirected arc-centric de Bruijn graph, k-mer based methods}
}
@InProceedings{lopezsanchez_et_al:LIPIcs.WABI.2022.3,
  author =	{L\'{o}pez S\'{a}nchez, Alitzel and Lafond, Manuel},
  title =	{{Predicting Horizontal Gene Transfers with Perfect Transfer Networks}},
  booktitle =	{22nd International Workshop on Algorithms in Bioinformatics (WABI 2022)},
  pages =	{3:1--3:22},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-243-3},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{242},
  editor =	{Boucher, Christina and Rahmann, Sven},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2022.3},
  URN =		{urn:nbn:de:0030-drops-170376},
  doi =		{10.4230/LIPIcs.WABI.2022.3},
  annote =	{Keywords: Horizontal gene transfer, tree-based networks, perfect phylogenies, character-based, gene-expression, indirect phylogenetic methods}
}
@InProceedings{sanaullah_et_al:LIPIcs.WABI.2022.4,
  author =	{Sanaullah, Ahsan and Zhi, Degui and Zhang, Shaoije},
  title =	{{Haplotype Threading Using the Positional Burrows-Wheeler Transform}},
  booktitle =	{22nd International Workshop on Algorithms in Bioinformatics (WABI 2022)},
  pages =	{4:1--4:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-243-3},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{242},
  editor =	{Boucher, Christina and Rahmann, Sven},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2022.4},
  URN =		{urn:nbn:de:0030-drops-170386},
  doi =		{10.4230/LIPIcs.WABI.2022.4},
  annote =	{Keywords: Substring Cover, PBWT, Haplotype Threading, Haplotype Matching}
}
@InProceedings{gascon_et_al:LIPIcs.WABI.2022.5,
  author =	{Gascon, Mathieu and El-Mabrouk, Nadia},
  title =	{{Non-Binary Tree Reconciliation with Endosymbiotic Gene Transfer}},
  booktitle =	{22nd International Workshop on Algorithms in Bioinformatics (WABI 2022)},
  pages =	{5:1--5:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-243-3},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{242},
  editor =	{Boucher, Christina and Rahmann, Sven},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2022.5},
  URN =		{urn:nbn:de:0030-drops-170390},
  doi =		{10.4230/LIPIcs.WABI.2022.5},
  annote =	{Keywords: Reconciliation, Duplication, Endosymbiotic gene transfer, Multifurcated gene tree, Polytomy}
}
@InProceedings{bonnet_et_al:LIPIcs.WABI.2022.6,
  author =	{Bonnet, Konstantinn and Marschall, Tobias and Doerr¹, Daniel},
  title =	{{Constructing Founder Sets Under Allelic and Non-Allelic Homologous Recombination}},
  booktitle =	{22nd International Workshop on Algorithms in Bioinformatics (WABI 2022)},
  pages =	{6:1--6:23},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-243-3},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{242},
  editor =	{Boucher, Christina and Rahmann, Sven},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2022.6},
  URN =		{urn:nbn:de:0030-drops-170403},
  doi =		{10.4230/LIPIcs.WABI.2022.6},
  annote =	{Keywords: founder set reconstruction, variation graph, pangenomics, NAHR, homologous recombination}
}
@InProceedings{marchand_et_al:LIPIcs.WABI.2022.7,
  author =	{Marchand, Bertrand and Will, Sebastian and Berkemer, Sarah J. and Bulteau, Laurent and Ponty, Yann},
  title =	{{Automated Design of Dynamic Programming Schemes for RNA Folding with Pseudoknots}},
  booktitle =	{22nd International Workshop on Algorithms in Bioinformatics (WABI 2022)},
  pages =	{7:1--7:24},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-243-3},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{242},
  editor =	{Boucher, Christina and Rahmann, Sven},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2022.7},
  URN =		{urn:nbn:de:0030-drops-170414},
  doi =		{10.4230/LIPIcs.WABI.2022.7},
  annote =	{Keywords: RNA folding, treewidth, dynamic programming}
}
@InProceedings{liu_et_al:LIPIcs.WABI.2022.8,
  author =	{Liu, Baqiao and Warnow, Tandy},
  title =	{{Fast and Accurate Species Trees from Weighted Internode Distances}},
  booktitle =	{22nd International Workshop on Algorithms in Bioinformatics (WABI 2022)},
  pages =	{8:1--8:24},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-243-3},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{242},
  editor =	{Boucher, Christina and Rahmann, Sven},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2022.8},
  URN =		{urn:nbn:de:0030-drops-170424},
  doi =		{10.4230/LIPIcs.WABI.2022.8},
  annote =	{Keywords: Species tree estimation, ASTRID, ASTRAL, multi-species coalescent, incomplete lineage sorting}
}
@InProceedings{pibiri:LIPIcs.WABI.2022.9,
  author =	{Pibiri, Giulio Ermanno},
  title =	{{On Weighted k-mer Dictionaries}},
  booktitle =	{22nd International Workshop on Algorithms in Bioinformatics (WABI 2022)},
  pages =	{9:1--9:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-243-3},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{242},
  editor =	{Boucher, Christina and Rahmann, Sven},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2022.9},
  URN =		{urn:nbn:de:0030-drops-170439},
  doi =		{10.4230/LIPIcs.WABI.2022.9},
  annote =	{Keywords: K-Mers, Weights, Compression, Hashing}
}
@InProceedings{suzuki_et_al:LIPIcs.WABI.2022.10,
  author =	{Suzuki, Yoshihiko and Myers, Gene},
  title =	{{Accurate k-mer Classification Using Read Profiles}},
  booktitle =	{22nd International Workshop on Algorithms in Bioinformatics (WABI 2022)},
  pages =	{10:1--10:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-243-3},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{242},
  editor =	{Boucher, Christina and Rahmann, Sven},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2022.10},
  URN =		{urn:nbn:de:0030-drops-170446},
  doi =		{10.4230/LIPIcs.WABI.2022.10},
  annote =	{Keywords: K-mer, K-mer count, K-mer classification, HiFi sequencing}
}
@InProceedings{ozery_et_al:LIPIcs.WABI.2022.11,
  author =	{Ozery, Eden and Zehavi, Meirav and Ziv-Ukelson, Michal},
  title =	{{New Algorithms for Structure Informed Genome Rearrangement}},
  booktitle =	{22nd International Workshop on Algorithms in Bioinformatics (WABI 2022)},
  pages =	{11:1--11:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-243-3},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{242},
  editor =	{Boucher, Christina and Rahmann, Sven},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2022.11},
  URN =		{urn:nbn:de:0030-drops-170454},
  doi =		{10.4230/LIPIcs.WABI.2022.11},
  annote =	{Keywords: PQ-tree, Gene Cluster, Breakpoint Distance}
}
@InProceedings{zentgraf_et_al:LIPIcs.WABI.2022.12,
  author =	{Zentgraf, Jens and Rahmann, Sven},
  title =	{{Fast Gapped k-mer Counting with Subdivided Multi-Way Bucketed Cuckoo Hash Tables}},
  booktitle =	{22nd International Workshop on Algorithms in Bioinformatics (WABI 2022)},
  pages =	{12:1--12:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-243-3},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{242},
  editor =	{Boucher, Christina and Rahmann, Sven},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2022.12},
  URN =		{urn:nbn:de:0030-drops-170467},
  doi =		{10.4230/LIPIcs.WABI.2022.12},
  annote =	{Keywords: gapped k-mer, k-mer, counting, Cuckoo hashing, parallelization}
}
@InProceedings{braga_et_al:LIPIcs.WABI.2022.13,
  author =	{Braga, Mar{\'\i}lia D. V. and Brockmann, Leonie R. and Klerx, Katharina and Stoye, Jens},
  title =	{{A Linear Time Algorithm for an Extended Version of the Breakpoint Double Distance}},
  booktitle =	{22nd International Workshop on Algorithms in Bioinformatics (WABI 2022)},
  pages =	{13:1--13:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-243-3},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{242},
  editor =	{Boucher, Christina and Rahmann, Sven},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2022.13},
  URN =		{urn:nbn:de:0030-drops-170472},
  doi =		{10.4230/LIPIcs.WABI.2022.13},
  annote =	{Keywords: Comparative genomics, genome rearrangement, breakpoint distance, double-cut-and-join (DCJ) distance, double distance}
}
@InProceedings{shibuya_et_al:LIPIcs.WABI.2022.14,
  author =	{Shibuya, Yoshihiro and Belazzougui, Djamal and Kucherov, Gregory},
  title =	{{Efficient Reconciliation of Genomic Datasets of High Similarity}},
  booktitle =	{22nd International Workshop on Algorithms in Bioinformatics (WABI 2022)},
  pages =	{14:1--14:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-243-3},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{242},
  editor =	{Boucher, Christina and Rahmann, Sven},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2022.14},
  URN =		{urn:nbn:de:0030-drops-170481},
  doi =		{10.4230/LIPIcs.WABI.2022.14},
  annote =	{Keywords: k-mers, sketching, Invertible Bloom Lookup Tables, IBLT, MinHash, syncmers, minimizers}
}
@InProceedings{wei_et_al:LIPIcs.WABI.2022.15,
  author =	{Wei, Wei and Koslicki, David},
  title =	{{WGSUniFrac: Applying UniFrac Metric to Whole Genome Shotgun Data}},
  booktitle =	{22nd International Workshop on Algorithms in Bioinformatics (WABI 2022)},
  pages =	{15:1--15:22},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-243-3},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{242},
  editor =	{Boucher, Christina and Rahmann, Sven},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2022.15},
  URN =		{urn:nbn:de:0030-drops-170494},
  doi =		{10.4230/LIPIcs.WABI.2022.15},
  annote =	{Keywords: UniFrac, beta-diversity, Whole Genome Shotgun, microbial community similarity}
}
@InProceedings{bernardini_et_al:LIPIcs.WABI.2022.16,
  author =	{Bernardini, Giulia and van Iersel, Leo and Julien, Esther and Stougie, Leen},
  title =	{{Reconstructing Phylogenetic Networks via Cherry Picking and Machine Learning}},
  booktitle =	{22nd International Workshop on Algorithms in Bioinformatics (WABI 2022)},
  pages =	{16:1--16:22},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-243-3},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{242},
  editor =	{Boucher, Christina and Rahmann, Sven},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2022.16},
  URN =		{urn:nbn:de:0030-drops-170507},
  doi =		{10.4230/LIPIcs.WABI.2022.16},
  annote =	{Keywords: Phylogenetics, Hybridization, Cherry Picking, Machine Learning, Heuristic}
}
@InProceedings{gibney_et_al:LIPIcs.WABI.2022.17,
  author =	{Gibney, Daniel and Thankachan, Sharma V. and Aluru, Srinivas},
  title =	{{Feasibility of Flow Decomposition with Subpath Constraints in Linear Time}},
  booktitle =	{22nd International Workshop on Algorithms in Bioinformatics (WABI 2022)},
  pages =	{17:1--17:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-243-3},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{242},
  editor =	{Boucher, Christina and Rahmann, Sven},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2022.17},
  URN =		{urn:nbn:de:0030-drops-170516},
  doi =		{10.4230/LIPIcs.WABI.2022.17},
  annote =	{Keywords: Flow networks, flow decomposition, subpath constraints}
}
@InProceedings{goga_et_al:LIPIcs.WABI.2022.18,
  author =	{Goga, Adri\'{a}n and Bal\'{a}\v{z}, Andrej},
  title =	{{Prefix-Free Parsing for Building Large Tunnelled Wheeler Graphs}},
  booktitle =	{22nd International Workshop on Algorithms in Bioinformatics (WABI 2022)},
  pages =	{18:1--18:12},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-243-3},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{242},
  editor =	{Boucher, Christina and Rahmann, Sven},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2022.18},
  URN =		{urn:nbn:de:0030-drops-170529},
  doi =		{10.4230/LIPIcs.WABI.2022.18},
  annote =	{Keywords: Wheeler graphs, BWT tunnelling, prefix-free parsing, pangenomic graphs}
}
@InProceedings{mun_et_al:LIPIcs.WABI.2022.19,
  author =	{Mun, Taher and Vaddadi, Naga Sai Kavya and Langmead, Ben},
  title =	{{Pangenomic Genotyping with the Marker Array}},
  booktitle =	{22nd International Workshop on Algorithms in Bioinformatics (WABI 2022)},
  pages =	{19:1--19:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-243-3},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{242},
  editor =	{Boucher, Christina and Rahmann, Sven},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2022.19},
  URN =		{urn:nbn:de:0030-drops-170530},
  doi =		{10.4230/LIPIcs.WABI.2022.19},
  annote =	{Keywords: Sequence alignment indexing genotyping}
}
@InProceedings{liptak_et_al:LIPIcs.WABI.2022.20,
  author =	{Lipt\'{a}k, Zsuzsanna and Masillo, Francesco and Puglisi, Simon J.},
  title =	{{Suffix Sorting via Matching Statistics}},
  booktitle =	{22nd International Workshop on Algorithms in Bioinformatics (WABI 2022)},
  pages =	{20:1--20:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-243-3},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{242},
  editor =	{Boucher, Christina and Rahmann, Sven},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2022.20},
  URN =		{urn:nbn:de:0030-drops-170545},
  doi =		{10.4230/LIPIcs.WABI.2022.20},
  annote =	{Keywords: Generalized suffix array, matching statistics, string collections, compressed representation, data structures, efficient algorithms}
}
@InProceedings{simonaitis_et_al:LIPIcs.WABI.2022.21,
  author =	{Simonaitis, Pijus and Raphael, Benjamin J.},
  title =	{{A Maximum Parsimony Principle for Multichromosomal Complex Genome Rearrangements}},
  booktitle =	{22nd International Workshop on Algorithms in Bioinformatics (WABI 2022)},
  pages =	{21:1--21:22},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-243-3},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{242},
  editor =	{Boucher, Christina and Rahmann, Sven},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2022.21},
  URN =		{urn:nbn:de:0030-drops-170552},
  doi =		{10.4230/LIPIcs.WABI.2022.21},
  annote =	{Keywords: Genome rearrangements, maximum parsimony, cancer evolution, chromothripsis, structural variation, affected chromosomes}
}
@InProceedings{chen_et_al:LIPIcs.WABI.2022.22,
  author =	{Chen, Ke and Shao, Mingfu},
  title =	{{Locality-Sensitive Bucketing Functions for the Edit Distance}},
  booktitle =	{22nd International Workshop on Algorithms in Bioinformatics (WABI 2022)},
  pages =	{22:1--22:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-243-3},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{242},
  editor =	{Boucher, Christina and Rahmann, Sven},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2022.22},
  URN =		{urn:nbn:de:0030-drops-170563},
  doi =		{10.4230/LIPIcs.WABI.2022.22},
  annote =	{Keywords: Locality-sensitive hashing, locality-sensitive bucketing, long reads, embedding}
}
@InProceedings{guerrini_et_al:LIPIcs.WABI.2022.23,
  author =	{Guerrini, Veronica and Conte, Alessio and Grossi, Roberto and Liti, Gianni and Rosone, Giovanna and Tattini, Lorenzo},
  title =	{{phyBWT: Alignment-Free Phylogeny via eBWT Positional Clustering}},
  booktitle =	{22nd International Workshop on Algorithms in Bioinformatics (WABI 2022)},
  pages =	{23:1--23:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-243-3},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{242},
  editor =	{Boucher, Christina and Rahmann, Sven},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2022.23},
  URN =		{urn:nbn:de:0030-drops-170577},
  doi =		{10.4230/LIPIcs.WABI.2022.23},
  annote =	{Keywords: Phylogeny, partition tree, BWT, positional cluster, alignment-free, reference-free, assembly-free}
}
@InProceedings{rubert_et_al:LIPIcs.WABI.2022.24,
  author =	{Rubert, Diego P. and Braga, Mar{\'\i}lia D. V.},
  title =	{{Gene Orthology Inference via Large-Scale Rearrangements for Partially Assembled Genomes}},
  booktitle =	{22nd International Workshop on Algorithms in Bioinformatics (WABI 2022)},
  pages =	{24:1--24:22},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-243-3},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{242},
  editor =	{Boucher, Christina and Rahmann, Sven},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2022.24},
  URN =		{urn:nbn:de:0030-drops-170586},
  doi =		{10.4230/LIPIcs.WABI.2022.24},
  annote =	{Keywords: Comparative genomics, double-cut-and-join, indels, gene orthology}
}
@InProceedings{agret_et_al:LIPIcs.WABI.2022.25,
  author =	{Agret, Cl\'{e}ment and Cazaux, Bastien and Limasset, Antoine},
  title =	{{Toward Optimal Fingerprint Indexing for Large Scale Genomics}},
  booktitle =	{22nd International Workshop on Algorithms in Bioinformatics (WABI 2022)},
  pages =	{25:1--25:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-243-3},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{242},
  editor =	{Boucher, Christina and Rahmann, Sven},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2022.25},
  URN =		{urn:nbn:de:0030-drops-170598},
  doi =		{10.4230/LIPIcs.WABI.2022.25},
  annote =	{Keywords: Data Structure, Indexation, Local Sensitive Hashing, Genomes, Databases}
}