@Proceedings{belazzougui_et_al:LIPIcs.WABI.2023,
  title =	{{LIPIcs, Volume 273, WABI 2023, Complete Volume}},
  booktitle =	{23rd International Workshop on Algorithms in Bioinformatics (WABI 2023)},
  pages =	{1--400},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-294-5},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{273},
  editor =	{Belazzougui, Djamal and Ouangraoua, A\"{i}da},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2023},
  URN =		{urn:nbn:de:0030-drops-186250},
  doi =		{10.4230/LIPIcs.WABI.2023},
  annote =	{Keywords: LIPIcs, Volume 273, WABI 2023, Complete Volume}
}
@InProceedings{belazzougui_et_al:LIPIcs.WABI.2023.0,
  author =	{Belazzougui, Djamal and Ouangraoua, A\"{i}da},
  title =	{{Front Matter, Table of Contents, Preface, Conference Organization}},
  booktitle =	{23rd International Workshop on Algorithms in Bioinformatics (WABI 2023)},
  pages =	{0:i--0:xiv},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-294-5},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{273},
  editor =	{Belazzougui, Djamal and Ouangraoua, A\"{i}da},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2023.0},
  URN =		{urn:nbn:de:0030-drops-186267},
  doi =		{10.4230/LIPIcs.WABI.2023.0},
  annote =	{Keywords: Front Matter, Table of Contents, Preface, Conference Organization}
}
@InProceedings{przytycka:LIPIcs.WABI.2023.1,
  author =	{Przytycka, Teresa M.},
  title =	{{Algorithmic Approaches to Study Mutational Processes in Cancer}},
  booktitle =	{23rd International Workshop on Algorithms in Bioinformatics (WABI 2023)},
  pages =	{1:1--1:2},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-294-5},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{273},
  editor =	{Belazzougui, Djamal and Ouangraoua, A\"{i}da},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2023.1},
  URN =		{urn:nbn:de:0030-drops-186278},
  doi =		{10.4230/LIPIcs.WABI.2023.1},
  annote =	{Keywords: Biological Networks, Cancer, Mutational Signatures, DNA Damage, DNA Repair}
}
@InProceedings{shen_et_al:LIPIcs.WABI.2023.2,
  author =	{Shen, Chengze and Liu, Baqiao and Williams, Kelly P. and Warnow, Tandy},
  title =	{{EMMA: Adding Sequences into a Constraint Alignment with High Accuracy and Scalability}},
  booktitle =	{23rd International Workshop on Algorithms in Bioinformatics (WABI 2023)},
  pages =	{2:1--2:2},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-294-5},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{273},
  editor =	{Belazzougui, Djamal and Ouangraoua, A\"{i}da},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2023.2},
  URN =		{urn:nbn:de:0030-drops-186285},
  doi =		{10.4230/LIPIcs.WABI.2023.2},
  annote =	{Keywords: Multiple sequence alignment, constraint alignment, MAFFT}
}
@InProceedings{wedell_et_al:LIPIcs.WABI.2023.3,
  author =	{Wedell, Eleanor and Shen, Chengze and Warnow, Tandy},
  title =	{{BATCH-SCAMPP: Scaling Phylogenetic Placement Methods to Place Many Sequences}},
  booktitle =	{23rd International Workshop on Algorithms in Bioinformatics (WABI 2023)},
  pages =	{3:1--3:2},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-294-5},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{273},
  editor =	{Belazzougui, Djamal and Ouangraoua, A\"{i}da},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2023.3},
  URN =		{urn:nbn:de:0030-drops-186296},
  doi =		{10.4230/LIPIcs.WABI.2023.3},
  annote =	{Keywords: Phylogenetic Placement, EPA-ng, Phylogenetics}
}
@InProceedings{arasti_et_al:LIPIcs.WABI.2023.4,
  author =	{Arasti, Shayesteh and Mirarab, Siavash},
  title =	{{Optimal Subtree Prune and Regraft for Quartet Score in Sub-Quadratic Time}},
  booktitle =	{23rd International Workshop on Algorithms in Bioinformatics (WABI 2023)},
  pages =	{4:1--4:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-294-5},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{273},
  editor =	{Belazzougui, Djamal and Ouangraoua, A\"{i}da},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2023.4},
  URN =		{urn:nbn:de:0030-drops-186309},
  doi =		{10.4230/LIPIcs.WABI.2023.4},
  annote =	{Keywords: Phylogenetics, Gene tree discordance, Quartet score, Quartet distance, Subtree prune and regraft, Tree search, ASTRAL}
}
@InProceedings{dai_et_al:LIPIcs.WABI.2023.5,
  author =	{Dai, Junyan and Rubel, Tobias and Han, Yunheng and Molloy, Erin K.},
  title =	{{Leveraging Constraints Plus Dynamic Programming for the Large Dollo Parsimony Problem}},
  booktitle =	{23rd International Workshop on Algorithms in Bioinformatics (WABI 2023)},
  pages =	{5:1--5:23},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-294-5},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{273},
  editor =	{Belazzougui, Djamal and Ouangraoua, A\"{i}da},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2023.5},
  URN =		{urn:nbn:de:0030-drops-186312},
  doi =		{10.4230/LIPIcs.WABI.2023.5},
  annote =	{Keywords: phylogenetics, parsimony, Dollo, Camin-Sokal, dynamic programming, constraints}
}
@InProceedings{gorecki_et_al:LIPIcs.WABI.2023.6,
  author =	{G\'{o}recki, Pawe{\l} and Rutecka, Natalia and Mykowiecka, Agnieszka and Paszek, Jaros{\l}aw},
  title =	{{Simultaneous Reconstruction of Duplication Episodes and Gene-Species Mappings}},
  booktitle =	{23rd International Workshop on Algorithms in Bioinformatics (WABI 2023)},
  pages =	{6:1--6:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-294-5},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{273},
  editor =	{Belazzougui, Djamal and Ouangraoua, A\"{i}da},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2023.6},
  URN =		{urn:nbn:de:0030-drops-186329},
  doi =		{10.4230/LIPIcs.WABI.2023.6},
  annote =	{Keywords: Genomic Duplication, Gene-Species Mapping, Duplication Episode, Gene Tree, Species Tree}
}
@InProceedings{vaniersel_et_al:LIPIcs.WABI.2023.7,
  author =	{van Iersel, Leo and Jones, Mark and Julien, Esther and Murakami, Yukihiro},
  title =	{{Making a Network Orchard by Adding Leaves}},
  booktitle =	{23rd International Workshop on Algorithms in Bioinformatics (WABI 2023)},
  pages =	{7:1--7:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-294-5},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{273},
  editor =	{Belazzougui, Djamal and Ouangraoua, A\"{i}da},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2023.7},
  URN =		{urn:nbn:de:0030-drops-186333},
  doi =		{10.4230/LIPIcs.WABI.2023.7},
  annote =	{Keywords: Phylogenetics, Network, Orchard Networks, Proximity Measures, NP-hardness}
}
@InProceedings{han_et_al:LIPIcs.WABI.2023.8,
  author =	{Han, Yunheng and Molloy, Erin K.},
  title =	{{Quartets Enable Statistically Consistent Estimation of Cell Lineage Trees Under an Unbiased Error and Missingness Model}},
  booktitle =	{23rd International Workshop on Algorithms in Bioinformatics (WABI 2023)},
  pages =	{8:1--8:2},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-294-5},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{273},
  editor =	{Belazzougui, Djamal and Ouangraoua, A\"{i}da},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2023.8},
  URN =		{urn:nbn:de:0030-drops-186347},
  doi =		{10.4230/LIPIcs.WABI.2023.8},
  annote =	{Keywords: Tumor Phylogenetics, Cell Lineage Trees, Quartets, Supertrees, ASTRAL}
}
@InProceedings{roddur_et_al:LIPIcs.WABI.2023.9,
  author =	{Roddur, Mrinmoy Saha and Snir, Sagi and El-Kebir, Mohammed},
  title =	{{Inferring Temporally Consistent Migration Histories}},
  booktitle =	{23rd International Workshop on Algorithms in Bioinformatics (WABI 2023)},
  pages =	{9:1--9:22},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-294-5},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{273},
  editor =	{Belazzougui, Djamal and Ouangraoua, A\"{i}da},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2023.9},
  URN =		{urn:nbn:de:0030-drops-186357},
  doi =		{10.4230/LIPIcs.WABI.2023.9},
  annote =	{Keywords: Metastasis, Migration, Integer Linear Programming, Maximum parsimony}
}
@InProceedings{rizzo_et_al:LIPIcs.WABI.2023.10,
  author =	{Rizzo, Nicola and C\'{a}ceres, Manuel and M\"{a}kinen, Veli},
  title =	{{Finding Maximal Exact Matches in Graphs}},
  booktitle =	{23rd International Workshop on Algorithms in Bioinformatics (WABI 2023)},
  pages =	{10:1--10:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-294-5},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{273},
  editor =	{Belazzougui, Djamal and Ouangraoua, A\"{i}da},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2023.10},
  URN =		{urn:nbn:de:0030-drops-186364},
  doi =		{10.4230/LIPIcs.WABI.2023.10},
  annote =	{Keywords: Sequence to graph alignment, bidirectional BWT, r-index, suffix tree, founder graphs}
}
@InProceedings{qiu_et_al:LIPIcs.WABI.2023.11,
  author =	{Qiu, Yutong and Shen, Yihang and Kingsford, Carl},
  title =	{{Revisiting the Complexity of and Algorithms for the Graph Traversal Edit Distance and Its Variants}},
  booktitle =	{23rd International Workshop on Algorithms in Bioinformatics (WABI 2023)},
  pages =	{11:1--11:22},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-294-5},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{273},
  editor =	{Belazzougui, Djamal and Ouangraoua, A\"{i}da},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2023.11},
  URN =		{urn:nbn:de:0030-drops-186374},
  doi =		{10.4230/LIPIcs.WABI.2023.11},
  annote =	{Keywords: Integer Linear Programming, Genome Graphs, Flow Network, Graph Comparison}
}
@InProceedings{rajput_et_al:LIPIcs.WABI.2023.12,
  author =	{Rajput, Jyotshna and Chandra, Ghanshyam and Jain, Chirag},
  title =	{{Co-Linear Chaining on Pangenome Graphs}},
  booktitle =	{23rd International Workshop on Algorithms in Bioinformatics (WABI 2023)},
  pages =	{12:1--12:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-294-5},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{273},
  editor =	{Belazzougui, Djamal and Ouangraoua, A\"{i}da},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2023.12},
  URN =		{urn:nbn:de:0030-drops-186389},
  doi =		{10.4230/LIPIcs.WABI.2023.12},
  annote =	{Keywords: Sequence alignment, variation graph, genome sequencing, path cover}
}
@InProceedings{hong_et_al:LIPIcs.WABI.2023.13,
  author =	{Hong, Aaron and Oliva, Marco and K\"{o}ppl, Dominik and Bannai, Hideo and Boucher, Christina and Gagie, Travis},
  title =	{{Acceleration of FM-Index Queries Through Prefix-Free Parsing}},
  booktitle =	{23rd International Workshop on Algorithms in Bioinformatics (WABI 2023)},
  pages =	{13:1--13:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-294-5},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{273},
  editor =	{Belazzougui, Djamal and Ouangraoua, A\"{i}da},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2023.13},
  URN =		{urn:nbn:de:0030-drops-186390},
  doi =		{10.4230/LIPIcs.WABI.2023.13},
  annote =	{Keywords: FM-index, pangenomics, scalability, word-based indexing, random access}
}
@InProceedings{schulz_et_al:LIPIcs.WABI.2023.14,
  author =	{Schulz, Tizian and Medvedev, Paul},
  title =	{{Exact Sketch-Based Read Mapping}},
  booktitle =	{23rd International Workshop on Algorithms in Bioinformatics (WABI 2023)},
  pages =	{14:1--14:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-294-5},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{273},
  editor =	{Belazzougui, Djamal and Ouangraoua, A\"{i}da},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2023.14},
  URN =		{urn:nbn:de:0030-drops-186403},
  doi =		{10.4230/LIPIcs.WABI.2023.14},
  annote =	{Keywords: Sequence Sketching, Long-read Mapping, Exact Algorithm, Dynamic Programming}
}
@InProceedings{rouze_et_al:LIPIcs.WABI.2023.15,
  author =	{Rouz\'{e}, Timoth\'{e} and Martayan, Igor and Marchet, Camille and Limasset, Antoine},
  title =	{{Fractional Hitting Sets for Efficient and Lightweight Genomic Data Sketching}},
  booktitle =	{23rd International Workshop on Algorithms in Bioinformatics (WABI 2023)},
  pages =	{15:1--15:27},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-294-5},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{273},
  editor =	{Belazzougui, Djamal and Ouangraoua, A\"{i}da},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2023.15},
  URN =		{urn:nbn:de:0030-drops-186414},
  doi =		{10.4230/LIPIcs.WABI.2023.15},
  annote =	{Keywords: k-mer, subsampling, sketching, Jaccard, containment, metagenomics}
}
@InProceedings{khan_et_al:LIPIcs.WABI.2023.16,
  author =	{Khan, Jamshed and Rubel, Tobias and Dhulipala, Laxman and Molloy, Erin and Patro, Rob},
  title =	{{Fast, Parallel, and Cache-Friendly Suffix Array Construction}},
  booktitle =	{23rd International Workshop on Algorithms in Bioinformatics (WABI 2023)},
  pages =	{16:1--16:21},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-294-5},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{273},
  editor =	{Belazzougui, Djamal and Ouangraoua, A\"{i}da},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2023.16},
  URN =		{urn:nbn:de:0030-drops-186424},
  doi =		{10.4230/LIPIcs.WABI.2023.16},
  annote =	{Keywords: Suffix Array, Longest Common Prefix, Data Structures, Indexing, Parallel Algorithms}
}
@InProceedings{rahman_et_al:LIPIcs.WABI.2023.17,
  author =	{Rahman, Amatur and Dufresne, Yoann and Medvedev, Paul},
  title =	{{Compression Algorithm for Colored de Bruijn Graphs}},
  booktitle =	{23rd International Workshop on Algorithms in Bioinformatics (WABI 2023)},
  pages =	{17:1--17:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-294-5},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{273},
  editor =	{Belazzougui, Djamal and Ouangraoua, A\"{i}da},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2023.17},
  URN =		{urn:nbn:de:0030-drops-186434},
  doi =		{10.4230/LIPIcs.WABI.2023.17},
  annote =	{Keywords: colored de Bruijn graphs, disk compression, k-mer sets, simplitigs, spectrum-preserving string sets}
}
@InProceedings{fan_et_al:LIPIcs.WABI.2023.18,
  author =	{Fan, Jason and Singh, Noor Pratap and Khan, Jamshed and Pibiri, Giulio Ermanno and Patro, Rob},
  title =	{{Fulgor: A Fast and Compact \{k-mer\} Index for Large-Scale Matching and Color Queries}},
  booktitle =	{23rd International Workshop on Algorithms in Bioinformatics (WABI 2023)},
  pages =	{18:1--18:21},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-294-5},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{273},
  editor =	{Belazzougui, Djamal and Ouangraoua, A\"{i}da},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2023.18},
  URN =		{urn:nbn:de:0030-drops-186446},
  doi =		{10.4230/LIPIcs.WABI.2023.18},
  annote =	{Keywords: k-mers, Colored de Bruijn Graph, Compression, Read-mapping}
}
@InProceedings{gray_et_al:LIPIcs.WABI.2023.19,
  author =	{Gray, Mateo and Will, Sebastian and Jabbari, Hosna},
  title =	{{SparseRNAFolD: Sparse RNA Pseudoknot-Free Folding Including Dangles}},
  booktitle =	{23rd International Workshop on Algorithms in Bioinformatics (WABI 2023)},
  pages =	{19:1--19:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-294-5},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{273},
  editor =	{Belazzougui, Djamal and Ouangraoua, A\"{i}da},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2023.19},
  URN =		{urn:nbn:de:0030-drops-186454},
  doi =		{10.4230/LIPIcs.WABI.2023.19},
  annote =	{Keywords: RNA, MFE, Secondary Structure Prediction, Dangle, Sparsification, Space Complexity, Time Complexity}
}
@InProceedings{boury_et_al:LIPIcs.WABI.2023.20,
  author =	{Boury, Th\'{e}o and Ponty, Yann and Reinharz, Vladimir},
  title =	{{Automatic Exploration of the Natural Variability of RNA Non-Canonical Geometric Patterns with a Parameterized Sampling Technique}},
  booktitle =	{23rd International Workshop on Algorithms in Bioinformatics (WABI 2023)},
  pages =	{20:1--20:22},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-294-5},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{273},
  editor =	{Belazzougui, Djamal and Ouangraoua, A\"{i}da},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2023.20},
  URN =		{urn:nbn:de:0030-drops-186460},
  doi =		{10.4230/LIPIcs.WABI.2023.20},
  annote =	{Keywords: Subgraph Isomorphism, 3D RNA, Parameterized Complexity, Tree Decomposition, Boltzmann sampling, Neighborhood metrics, Kink-Turn family}
}
@InProceedings{gu_et_al:LIPIcs.WABI.2023.21,
  author =	{Gu, Xinyu and Qi, Yuanyuan and El-Kebir, Mohammed},
  title =	{{Balancing Minimum Free Energy and Codon Adaptation Index for Pareto Optimal RNA Design}},
  booktitle =	{23rd International Workshop on Algorithms in Bioinformatics (WABI 2023)},
  pages =	{21:1--21:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-294-5},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{273},
  editor =	{Belazzougui, Djamal and Ouangraoua, A\"{i}da},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2023.21},
  URN =		{urn:nbn:de:0030-drops-186479},
  doi =		{10.4230/LIPIcs.WABI.2023.21},
  annote =	{Keywords: Multi-objective optimization, dynamic programming, RNA sequence design, reverse translation, mRNA vaccine design}
}
@InProceedings{bohnenkamper:LIPIcs.WABI.2023.22,
  author =	{Bohnenk\"{a}mper, Leonard},
  title =	{{Bridging Disparate Views on the DCJ-Indel Model for a Capping-Free Solution to the Natural Distance Problem}},
  booktitle =	{23rd International Workshop on Algorithms in Bioinformatics (WABI 2023)},
  pages =	{22:1--22:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-294-5},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{273},
  editor =	{Belazzougui, Djamal and Ouangraoua, A\"{i}da},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2023.22},
  URN =		{urn:nbn:de:0030-drops-186484},
  doi =		{10.4230/LIPIcs.WABI.2023.22},
  annote =	{Keywords: Comparative Genomics, Genome Rearrangement, Double-Cut-And-Join, Indels, Integer Linear Programming, Capping}
}
@InProceedings{ferdosi_et_al:LIPIcs.WABI.2023.23,
  author =	{Ferdosi, Mohsen and Ge, Yuejun and Kingsford, Carl},
  title =	{{Reinforcement Learning for Robotic Liquid Handler Planning}},
  booktitle =	{23rd International Workshop on Algorithms in Bioinformatics (WABI 2023)},
  pages =	{23:1--23:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-294-5},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{273},
  editor =	{Belazzougui, Djamal and Ouangraoua, A\"{i}da},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2023.23},
  URN =		{urn:nbn:de:0030-drops-186494},
  doi =		{10.4230/LIPIcs.WABI.2023.23},
  annote =	{Keywords: Liquid Handler, Reinforcement Learning, Planning}
}