LIPIcs, Volume 273, WABI 2023
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Djamal Belazzougui and Aïda Ouangraoua
LIPIcs, Volume 273, WABI 2023, Complete Volume
10.4230/LIPIcs.WABI.2023
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Djamal Belazzougui and Aïda Ouangraoua
Front Matter, Table of Contents, Preface, Conference Organization
10.4230/LIPIcs.WABI.2023.0
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Teresa M. Przytycka
Algorithmic Approaches to Study Mutational Processes in Cancer (Invited Talk)
10.4230/LIPIcs.WABI.2023.1
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Chengze Shen, Baqiao Liu, Kelly P. Williams, and Tandy Warnow
EMMA: Adding Sequences into a Constraint Alignment with High Accuracy and Scalability (Abstract)
10.4230/LIPIcs.WABI.2023.2
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Eleanor Wedell, Chengze Shen, and Tandy Warnow
BATCH-SCAMPP: Scaling Phylogenetic Placement Methods to Place Many Sequences (Abstract)
10.4230/LIPIcs.WABI.2023.3
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Shayesteh Arasti and Siavash Mirarab
Optimal Subtree Prune and Regraft for Quartet Score in Sub-Quadratic Time
10.4230/LIPIcs.WABI.2023.4
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Junyan Dai, Tobias Rubel, Yunheng Han, and Erin K. Molloy
Leveraging Constraints Plus Dynamic Programming for the Large Dollo Parsimony Problem
10.4230/LIPIcs.WABI.2023.5
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Paweł Górecki, Natalia Rutecka, Agnieszka Mykowiecka, and Jarosław Paszek
Simultaneous Reconstruction of Duplication Episodes and Gene-Species Mappings
10.4230/LIPIcs.WABI.2023.6
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Leo van Iersel, Mark Jones, Esther Julien, and Yukihiro Murakami
Making a Network Orchard by Adding Leaves
10.4230/LIPIcs.WABI.2023.7
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Yunheng Han and Erin K. Molloy
Quartets Enable Statistically Consistent Estimation of Cell Lineage Trees Under an Unbiased Error and Missingness Model (Abstract)
10.4230/LIPIcs.WABI.2023.8
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Mrinmoy Saha Roddur, Sagi Snir, and Mohammed El-Kebir
Inferring Temporally Consistent Migration Histories
10.4230/LIPIcs.WABI.2023.9
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Nicola Rizzo, Manuel Cáceres, and Veli Mäkinen
Finding Maximal Exact Matches in Graphs
10.4230/LIPIcs.WABI.2023.10
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Yutong Qiu, Yihang Shen, and Carl Kingsford
Revisiting the Complexity of and Algorithms for the Graph Traversal Edit Distance and Its Variants
10.4230/LIPIcs.WABI.2023.11
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Jyotshna Rajput, Ghanshyam Chandra, and Chirag Jain
Co-Linear Chaining on Pangenome Graphs
10.4230/LIPIcs.WABI.2023.12
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Aaron Hong, Marco Oliva, Dominik Köppl, Hideo Bannai, Christina Boucher, and Travis Gagie
Acceleration of FM-Index Queries Through Prefix-Free Parsing
10.4230/LIPIcs.WABI.2023.13
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Tizian Schulz and Paul Medvedev
Exact Sketch-Based Read Mapping
10.4230/LIPIcs.WABI.2023.14
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Timothé Rouzé, Igor Martayan, Camille Marchet, and Antoine Limasset
Fractional Hitting Sets for Efficient and Lightweight Genomic Data Sketching
10.4230/LIPIcs.WABI.2023.15
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Jamshed Khan, Tobias Rubel, Laxman Dhulipala, Erin Molloy, and Rob Patro
Fast, Parallel, and Cache-Friendly Suffix Array Construction
10.4230/LIPIcs.WABI.2023.16
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Amatur Rahman, Yoann Dufresne, and Paul Medvedev
Compression Algorithm for Colored de Bruijn Graphs
10.4230/LIPIcs.WABI.2023.17
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Jason Fan, Noor Pratap Singh, Jamshed Khan, Giulio Ermanno Pibiri, and Rob Patro
Fulgor: A Fast and Compact {k-mer} Index for Large-Scale Matching and Color Queries
10.4230/LIPIcs.WABI.2023.18
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Mateo Gray, Sebastian Will, and Hosna Jabbari
SparseRNAFolD: Sparse RNA Pseudoknot-Free Folding Including Dangles
10.4230/LIPIcs.WABI.2023.19
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Théo Boury, Yann Ponty, and Vladimir Reinharz
Automatic Exploration of the Natural Variability of RNA Non-Canonical Geometric Patterns with a Parameterized Sampling Technique
10.4230/LIPIcs.WABI.2023.20
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Xinyu Gu, Yuanyuan Qi, and Mohammed El-Kebir
Balancing Minimum Free Energy and Codon Adaptation Index for Pareto Optimal RNA Design
10.4230/LIPIcs.WABI.2023.21
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Leonard Bohnenkämper
Bridging Disparate Views on the DCJ-Indel Model for a Capping-Free Solution to the Natural Distance Problem
10.4230/LIPIcs.WABI.2023.22
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Mohsen Ferdosi, Yuejun Ge, and Carl Kingsford
Reinforcement Learning for Robotic Liquid Handler Planning
10.4230/LIPIcs.WABI.2023.23