LIPIcs, Volume 312, WABI 2024

• Solon P. Pissis and Wing-Kin Sung LIPIcs, Volume 312, WABI 2024, Complete Volume 10.4230/LIPIcs.WABI.2024
• Solon P. Pissis and Wing-Kin Sung Front Matter, Table of Contents, Preface, Conference Organization 10.4230/LIPIcs.WABI.2024.0
• Tomáš Vinař Bioinformatics of Pathogens (Invited Talk) 10.4230/LIPIcs.WABI.2024.1
• Luís Cunha, Ignasi Sau, and Uéverton Souza On the Complexity of the Median and Closest Permutation Problems 10.4230/LIPIcs.WABI.2024.2
• Yao-ban Chan An Efficient Algorithm for the Reconciliation of a Gene Network and Species Tree 10.4230/LIPIcs.WABI.2024.3
• Stephen Hwang, Nathaniel K. Brown, Omar Y. Ahmed, Katharine M. Jenike, Sam Kovaka, Michael C. Schatz, and Ben Langmead MEM-Based Pangenome Indexing for k-mer Queries 10.4230/LIPIcs.WABI.2024.4
• Lukas Hübner and Alexandros Stamatakis Memoization on Shared Subtrees Accelerates Computations on Genealogical Forests 10.4230/LIPIcs.WABI.2024.5
• Mahmudur Rahman Hera and David Koslicki Cosine Similarity Estimation Using FracMinHash: Theoretical Analysis, Safety Conditions, and Implementation 10.4230/LIPIcs.WABI.2024.6
• Yuanyuan Qi and Mohammed El-Kebir Sapling: Inferring and Summarizing Tumor Phylogenies from Bulk Data Using Backbone Trees 10.4230/LIPIcs.WABI.2024.7
• Sebastian Schmidt, Santeri Toivonen, Paul Medvedev, and Alexandru I. Tomescu Applying the Safe-And-Complete Framework to Practical Genome Assembly 10.4230/LIPIcs.WABI.2024.8
• Tsuyoshi Urata, Manato Yokoyama, and Momoko Hayamizu Orientability of Undirected Phylogenetic Networks to a Desired Class: Practical Algorithms and Application to Tree-Child Orientation 10.4230/LIPIcs.WABI.2024.9
• Lore Depuydt, Luca Renders, Simon Van de Vyver, Lennart Veys, Travis Gagie, and Jan Fostier b-move: Faster Bidirectional Character Extensions in a Run-Length Compressed Index 10.4230/LIPIcs.WABI.2024.10
• Ragnar Groot Koerkamp and Giulio Ermanno Pibiri The mod-minimizer: A Simple and Efficient Sampling Algorithm for Long k-mers 10.4230/LIPIcs.WABI.2024.11
• Leonard Bohnenkämper, Jens Stoye, and Daniel Dörr Reconstructing Rearrangement Phylogenies of Natural Genomes 10.4230/LIPIcs.WABI.2024.12
• Md. Hasin Abrar and Paul Medvedev PLA-index: A k-mer Index Exploiting Rank Curve Linearity 10.4230/LIPIcs.WABI.2024.13
• Rocco Ascone, Giulia Bernardini, Alessio Conte, Massimo Equi, Esteban Gabory, Roberto Grossi, and Nadia Pisanti A Unifying Taxonomy of Pattern Matching in Degenerate Strings and Founder Graphs 10.4230/LIPIcs.WABI.2024.14
• Jens Zentgraf and Sven Rahmann Swiftly Identifying Strongly Unique k-Mers 10.4230/LIPIcs.WABI.2024.15
• Bertrand Marchand, Nadia Tahiri, Olivier Tremblay-Savard, and Manuel Lafond Finding Maximum Common Contractions Between Phylogenetic Networks 10.4230/LIPIcs.WABI.2024.16
• Ragnar Groot Koerkamp A*PA2: Up to 19× Faster Exact Global Alignment 10.4230/LIPIcs.WABI.2024.17
• Kimon Boehmer, Sarah J. Berkemer, Sebastian Will, and Yann Ponty RNA Triplet Repeats: Improved Algorithms for Structure Prediction and Interactions 10.4230/LIPIcs.WABI.2024.18
• Théo Boury, Laurent Bulteau, and Yann Ponty RNA Inverse Folding Can Be Solved in Linear Time for Structures Without Isolated Stacks or Base Pairs 10.4230/LIPIcs.WABI.2024.19
• Alitzel López Sánchez, José Antonio Ramírez-Rafael, Alejandro Flores-Lamas, Maribel Hernández-Rosales, and Manuel Lafond The Path-Label Reconciliation (PLR) Dissimilarity Measure for Gene Trees 10.4230/LIPIcs.WABI.2024.20
• Giovanni Buzzega, Alessio Conte, Roberto Grossi, and Giulia Punzi McDag: Indexing Maximal Common Subsequences in Practice 10.4230/LIPIcs.WABI.2024.21
• Xiaofei Carl Zang, Xiang Li, Kyle Metcalfe, Tuval Ben-Yehezkel, Ryan Kelley, and Mingfu Shao Anchorage Accurately Assembles Anchor-Flanked Synthetic Long Reads 10.4230/LIPIcs.WABI.2024.22
• Adam Cicherski, Anna Lisiecka, and Norbert Dojer AlfaPang: Alignment Free Algorithm for Pangenome Graph Construction 10.4230/LIPIcs.WABI.2024.23