@Proceedings{karkkainen_et_al:LIPIcs.CPM.2017, title = {{LIPIcs, Volume 78, CPM'17, Complete Volume}}, booktitle = {28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017)}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-039-2}, ISSN = {1868-8969}, year = {2017}, volume = {78}, editor = {K\"{a}rkk\"{a}inen, Juha and Radoszewski, Jakub and Rytter, Wojciech}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2017}, URN = {urn:nbn:de:0030-drops-75091}, doi = {10.4230/LIPIcs.CPM.2017}, annote = {Keywords: Data Structures, Data Storage Representations, Coding and Information Theory, Theory of Computation, Discrete Mathematics, Information Systems,} } @InProceedings{karkkainen_et_al:LIPIcs.CPM.2017.0, author = {K\"{a}rkk\"{a}inen, Juha and Radoszewski, Jakub and Rytter, Wojciech}, title = {{Front Matter, Table of Contents, Preface, Conference Organization, External Reviewers}}, booktitle = {28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017)}, pages = {0:i--0:xvi}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-039-2}, ISSN = {1868-8969}, year = {2017}, volume = {78}, editor = {K\"{a}rkk\"{a}inen, Juha and Radoszewski, Jakub and Rytter, Wojciech}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2017.0}, URN = {urn:nbn:de:0030-drops-73178}, doi = {10.4230/LIPIcs.CPM.2017.0}, annote = {Keywords: Front Matter, Table of Contents, Preface, Conference Organization, External Reviewers} } @InProceedings{manzini:LIPIcs.CPM.2017.1, author = {Manzini, Giovanni}, title = {{Wheeler Graphs: Variations on a Theme by Burrows and Wheeler}}, booktitle = {28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017)}, pages = {1:1--1:1}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-039-2}, ISSN = {1868-8969}, year = {2017}, volume = {78}, editor = {K\"{a}rkk\"{a}inen, Juha and Radoszewski, Jakub and Rytter, Wojciech}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2017.1}, URN = {urn:nbn:de:0030-drops-73343}, doi = {10.4230/LIPIcs.CPM.2017.1}, annote = {Keywords: compressed data structures, pattern matching} } @InProceedings{jez:LIPIcs.CPM.2017.2, author = {Jez, Artur}, title = {{Recompression of SLPs}}, booktitle = {28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017)}, pages = {2:1--2:1}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-039-2}, ISSN = {1868-8969}, year = {2017}, volume = {78}, editor = {K\"{a}rkk\"{a}inen, Juha and Radoszewski, Jakub and Rytter, Wojciech}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2017.2}, URN = {urn:nbn:de:0030-drops-73475}, doi = {10.4230/LIPIcs.CPM.2017.2}, annote = {Keywords: Straight Line Programs, smallest grammar problem, compression, pro- cessing compressed data, recompression} } @InProceedings{mucha:LIPIcs.CPM.2017.3, author = {Mucha, Marcin}, title = {{Shortest Superstring}}, booktitle = {28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017)}, pages = {3:1--3:1}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-039-2}, ISSN = {1868-8969}, year = {2017}, volume = {78}, editor = {K\"{a}rkk\"{a}inen, Juha and Radoszewski, Jakub and Rytter, Wojciech}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2017.3}, URN = {urn:nbn:de:0030-drops-73483}, doi = {10.4230/LIPIcs.CPM.2017.3}, annote = {Keywords: shortest superstring, approximation algorithms} } @InProceedings{navarro:LIPIcs.CPM.2017.4, author = {Navarro, Gonzalo}, title = {{Document Listing on Repetitive Collections with Guaranteed Performance}}, booktitle = {28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017)}, pages = {4:1--4:13}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-039-2}, ISSN = {1868-8969}, year = {2017}, volume = {78}, editor = {K\"{a}rkk\"{a}inen, Juha and Radoszewski, Jakub and Rytter, Wojciech}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2017.4}, URN = {urn:nbn:de:0030-drops-73268}, doi = {10.4230/LIPIcs.CPM.2017.4}, annote = {Keywords: repetitive string collections, document listing, grammar compression, range minimum queries, succinct data structures} } @InProceedings{gagie_et_al:LIPIcs.CPM.2017.5, author = {Gagie, Travis and He, Meng and Navarro, Gonzalo}, title = {{Path Queries on Functions}}, booktitle = {28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017)}, pages = {5:1--5:15}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-039-2}, ISSN = {1868-8969}, year = {2017}, volume = {78}, editor = {K\"{a}rkk\"{a}inen, Juha and Radoszewski, Jakub and Rytter, Wojciech}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2017.5}, URN = {urn:nbn:de:0030-drops-73274}, doi = {10.4230/LIPIcs.CPM.2017.5}, annote = {Keywords: succinct data structures, integer functions, range queries, trees and permutations} } @InProceedings{bille_et_al:LIPIcs.CPM.2017.6, author = {Bille, Philip and G{\o}rtz, Inge Li and Skjoldjensen, Frederik Rye}, title = {{Deterministic Indexing for Packed Strings}}, booktitle = {28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017)}, pages = {6:1--6:11}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-039-2}, ISSN = {1868-8969}, year = {2017}, volume = {78}, editor = {K\"{a}rkk\"{a}inen, Juha and Radoszewski, Jakub and Rytter, Wojciech}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2017.6}, URN = {urn:nbn:de:0030-drops-73351}, doi = {10.4230/LIPIcs.CPM.2017.6}, annote = {Keywords: suffix tree, suffix array, deterministic algorithm, word packing} } @InProceedings{belazzougui_et_al:LIPIcs.CPM.2017.7, author = {Belazzougui, Djamal and Cunial, Fabio}, title = {{Representing the Suffix Tree with the CDAWG}}, booktitle = {28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017)}, pages = {7:1--7:13}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-039-2}, ISSN = {1868-8969}, year = {2017}, volume = {78}, editor = {K\"{a}rkk\"{a}inen, Juha and Radoszewski, Jakub and Rytter, Wojciech}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2017.7}, URN = {urn:nbn:de:0030-drops-73402}, doi = {10.4230/LIPIcs.CPM.2017.7}, annote = {Keywords: CDAWG, suffix tree, heavy path decomposition, maximal repeat, context-free grammar} } @InProceedings{diptarama_et_al:LIPIcs.CPM.2017.8, author = {Diptarama, Diptarama and Katsura, Takashi and Otomo, Yuhei and Narisawa, Kazuyuki and Shinohara, Ayumi}, title = {{Position Heaps for Parameterized Strings}}, booktitle = {28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017)}, pages = {8:1--8:13}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-039-2}, ISSN = {1868-8969}, year = {2017}, volume = {78}, editor = {K\"{a}rkk\"{a}inen, Juha and Radoszewski, Jakub and Rytter, Wojciech}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2017.8}, URN = {urn:nbn:de:0030-drops-73396}, doi = {10.4230/LIPIcs.CPM.2017.8}, annote = {Keywords: string matching, indexing structure, parameterized pattern matching, position heap} } @InProceedings{grossi_et_al:LIPIcs.CPM.2017.9, author = {Grossi, Roberto and Iliopoulos, Costas S. and Liu, Chang and Pisanti, Nadia and Pissis, Solon P. and Retha, Ahmad and Rosone, Giovanna and Vayani, Fatima and Versari, Luca}, title = {{On-Line Pattern Matching on Similar Texts}}, booktitle = {28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017)}, pages = {9:1--9:14}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-039-2}, ISSN = {1868-8969}, year = {2017}, volume = {78}, editor = {K\"{a}rkk\"{a}inen, Juha and Radoszewski, Jakub and Rytter, Wojciech}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2017.9}, URN = {urn:nbn:de:0030-drops-73379}, doi = {10.4230/LIPIcs.CPM.2017.9}, annote = {Keywords: string algorithms, pattern matching, degenerate strings, elastic-degenerate strings, on-line algorithms} } @InProceedings{dudek_et_al:LIPIcs.CPM.2017.10, author = {Dudek, Bartlomiej and Gawrychowski, Pawel and Ostropolski-Nalewaja, Piotr}, title = {{A Family of Approximation Algorithms for the Maximum Duo-Preservation String Mapping Problem}}, booktitle = {28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017)}, pages = {10:1--10:14}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-039-2}, ISSN = {1868-8969}, year = {2017}, volume = {78}, editor = {K\"{a}rkk\"{a}inen, Juha and Radoszewski, Jakub and Rytter, Wojciech}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2017.10}, URN = {urn:nbn:de:0030-drops-73458}, doi = {10.4230/LIPIcs.CPM.2017.10}, annote = {Keywords: approximation scheme, minimum common string partition, local search} } @InProceedings{komusiewicz_et_al:LIPIcs.CPM.2017.11, author = {Komusiewicz, Christian and de Oliveira Oliveira, Mateus and Zehavi, Meirav}, title = {{Revisiting the Parameterized Complexity of Maximum-Duo Preservation String Mapping}}, booktitle = {28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017)}, pages = {11:1--11:17}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-039-2}, ISSN = {1868-8969}, year = {2017}, volume = {78}, editor = {K\"{a}rkk\"{a}inen, Juha and Radoszewski, Jakub and Rytter, Wojciech}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2017.11}, URN = {urn:nbn:de:0030-drops-73436}, doi = {10.4230/LIPIcs.CPM.2017.11}, annote = {Keywords: comparative genomics, parameterized complexity, kernelization} } @InProceedings{bringmann_et_al:LIPIcs.CPM.2017.12, author = {Bringmann, Karl and Wellnitz, Philip}, title = {{Clique-Based Lower Bounds for Parsing Tree-Adjoining Grammars}}, booktitle = {28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017)}, pages = {12:1--12:14}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-039-2}, ISSN = {1868-8969}, year = {2017}, volume = {78}, editor = {K\"{a}rkk\"{a}inen, Juha and Radoszewski, Jakub and Rytter, Wojciech}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2017.12}, URN = {urn:nbn:de:0030-drops-73329}, doi = {10.4230/LIPIcs.CPM.2017.12}, annote = {Keywords: conditional lower bounds, k-Clique, parsing, tree-adjoining grammars} } @InProceedings{starikovskaya:LIPIcs.CPM.2017.13, author = {Starikovskaya, Tatiana}, title = {{Communication and Streaming Complexity of Approximate Pattern Matching}}, booktitle = {28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017)}, pages = {13:1--13:11}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-039-2}, ISSN = {1868-8969}, year = {2017}, volume = {78}, editor = {K\"{a}rkk\"{a}inen, Juha and Radoszewski, Jakub and Rytter, Wojciech}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2017.13}, URN = {urn:nbn:de:0030-drops-73206}, doi = {10.4230/LIPIcs.CPM.2017.13}, annote = {Keywords: approximate pattern matching, edit distance, randomised algorithms, streaming algorithms, communication complexity} } @InProceedings{castelli_et_al:LIPIcs.CPM.2017.14, author = {Castelli, Mauro and Dondi, Riccardo and Mauri, Giancarlo and Zoppis, Italo}, title = {{The Longest Filled Common Subsequence Problem}}, booktitle = {28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017)}, pages = {14:1--14:13}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-039-2}, ISSN = {1868-8969}, year = {2017}, volume = {78}, editor = {K\"{a}rkk\"{a}inen, Juha and Radoszewski, Jakub and Rytter, Wojciech}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2017.14}, URN = {urn:nbn:de:0030-drops-73293}, doi = {10.4230/LIPIcs.CPM.2017.14}, annote = {Keywords: longest common subsequence, approximation algorithms, computational complexity, fixed-parameter algorithms} } @InProceedings{bille_et_al:LIPIcs.CPM.2017.15, author = {Bille, Philip and Cording, Patrick Hagge and Fischer, Johannes and G{\o}rtz, Inge Li}, title = {{Lempel-Ziv Compression in a Sliding Window}}, booktitle = {28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017)}, pages = {15:1--15:11}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-039-2}, ISSN = {1868-8969}, year = {2017}, volume = {78}, editor = {K\"{a}rkk\"{a}inen, Juha and Radoszewski, Jakub and Rytter, Wojciech}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2017.15}, URN = {urn:nbn:de:0030-drops-73316}, doi = {10.4230/LIPIcs.CPM.2017.15}, annote = {Keywords: Lempel-Ziv parsing, sliding window, rightmost matching} } @InProceedings{bille_et_al:LIPIcs.CPM.2017.16, author = {Bille, Philip and Ettienne, Mikko Berggren and G{\o}rtz, Inge Li and Vildh{\o}j, Hjalte Wedel}, title = {{Time-Space Trade-Offs for Lempel-Ziv Compressed Indexing}}, booktitle = {28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017)}, pages = {16:1--16:17}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-039-2}, ISSN = {1868-8969}, year = {2017}, volume = {78}, editor = {K\"{a}rkk\"{a}inen, Juha and Radoszewski, Jakub and Rytter, Wojciech}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2017.16}, URN = {urn:nbn:de:0030-drops-73254}, doi = {10.4230/LIPIcs.CPM.2017.16}, annote = {Keywords: compressed indexing, pattern matching, LZ77, prefix search} } @InProceedings{policriti_et_al:LIPIcs.CPM.2017.17, author = {Policriti, Alberto and Prezza, Nicola}, title = {{From LZ77 to the Run-Length Encoded Burrows-Wheeler Transform, and Back}}, booktitle = {28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017)}, pages = {17:1--17:10}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-039-2}, ISSN = {1868-8969}, year = {2017}, volume = {78}, editor = {K\"{a}rkk\"{a}inen, Juha and Radoszewski, Jakub and Rytter, Wojciech}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2017.17}, URN = {urn:nbn:de:0030-drops-73215}, doi = {10.4230/LIPIcs.CPM.2017.17}, annote = {Keywords: Lempel-Ziv, Burrows-Wheeler transform, compressed computation, repetitive text collections} } @InProceedings{i:LIPIcs.CPM.2017.18, author = {I, Tomohiro}, title = {{Longest Common Extensions with Recompression}}, booktitle = {28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017)}, pages = {18:1--18:15}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-039-2}, ISSN = {1868-8969}, year = {2017}, volume = {78}, editor = {K\"{a}rkk\"{a}inen, Juha and Radoszewski, Jakub and Rytter, Wojciech}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2017.18}, URN = {urn:nbn:de:0030-drops-73234}, doi = {10.4230/LIPIcs.CPM.2017.18}, annote = {Keywords: Longest Common Extension (LCE) queries, compressed data structure, grammar compressed strings, Straight-Line Program (SLP)} } @InProceedings{cunha_et_al:LIPIcs.CPM.2017.19, author = {Cunha, Lu{\'\i}s and Dantas, Simone and Gagie, Travis and Wittler, Roland and Kowada, Luis and Stoye, Jens}, title = {{Fast and Simple Jumbled Indexing for Binary Run-Length Encoded Strings}}, booktitle = {28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017)}, pages = {19:1--19:9}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-039-2}, ISSN = {1868-8969}, year = {2017}, volume = {78}, editor = {K\"{a}rkk\"{a}inen, Juha and Radoszewski, Jakub and Rytter, Wojciech}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2017.19}, URN = {urn:nbn:de:0030-drops-73418}, doi = {10.4230/LIPIcs.CPM.2017.19}, annote = {Keywords: string algorithms, indexing, jumbled pattern matching, run-length encoding} } @InProceedings{kuboi_et_al:LIPIcs.CPM.2017.20, author = {Kuboi, Keita and Fujishige, Yuta and Inenaga, Shunsuke and Bannai, Hideo and Takeda, Masayuki}, title = {{Faster STR-IC-LCS Computation via RLE}}, booktitle = {28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017)}, pages = {20:1--20:12}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-039-2}, ISSN = {1868-8969}, year = {2017}, volume = {78}, editor = {K\"{a}rkk\"{a}inen, Juha and Radoszewski, Jakub and Rytter, Wojciech}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2017.20}, URN = {urn:nbn:de:0030-drops-73335}, doi = {10.4230/LIPIcs.CPM.2017.20}, annote = {Keywords: longest common subsequence, STR-IC-LCS, run-length encoding} } @InProceedings{duchon_et_al:LIPIcs.CPM.2017.21, author = {Duchon, Philippe and Nicaud, Cyril and Pivoteau, Carine}, title = {{Gapped Pattern Statistics}}, booktitle = {28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017)}, pages = {21:1--21:12}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-039-2}, ISSN = {1868-8969}, year = {2017}, volume = {78}, editor = {K\"{a}rkk\"{a}inen, Juha and Radoszewski, Jakub and Rytter, Wojciech}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2017.21}, URN = {urn:nbn:de:0030-drops-73309}, doi = {10.4230/LIPIcs.CPM.2017.21}, annote = {Keywords: combinatorics on words, alpha-gapped repeats, random words, memoryless sources, analytic combinatorics} } @InProceedings{bannai_et_al:LIPIcs.CPM.2017.22, author = {Bannai, Hideo and Inenaga, Shunsuke and K\"{o}ppl, Dominik}, title = {{Computing All Distinct Squares in Linear Time for Integer Alphabets}}, booktitle = {28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017)}, pages = {22:1--22:18}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-039-2}, ISSN = {1868-8969}, year = {2017}, volume = {78}, editor = {K\"{a}rkk\"{a}inen, Juha and Radoszewski, Jakub and Rytter, Wojciech}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2017.22}, URN = {urn:nbn:de:0030-drops-73224}, doi = {10.4230/LIPIcs.CPM.2017.22}, annote = {Keywords: tandem repeats, distinct squares, counting algorithms} } @InProceedings{borozdin_et_al:LIPIcs.CPM.2017.23, author = {Borozdin, Kirill and Kosolobov, Dmitry and Rubinchik, Mikhail and Shur, Arseny M.}, title = {{Palindromic Length in Linear Time}}, booktitle = {28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017)}, pages = {23:1--23:12}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-039-2}, ISSN = {1868-8969}, year = {2017}, volume = {78}, editor = {K\"{a}rkk\"{a}inen, Juha and Radoszewski, Jakub and Rytter, Wojciech}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2017.23}, URN = {urn:nbn:de:0030-drops-73389}, doi = {10.4230/LIPIcs.CPM.2017.23}, annote = {Keywords: palindrome, palindromic length, palindromic factorization, online} } @InProceedings{mieno_et_al:LIPIcs.CPM.2017.24, author = {Mieno, Takuya and Inenaga, Shunsuke and Bannai, Hideo and Takeda, Masayuki}, title = {{Tight Bounds on the Maximum Number of Shortest Unique Substrings}}, booktitle = {28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017)}, pages = {24:1--24:11}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-039-2}, ISSN = {1868-8969}, year = {2017}, volume = {78}, editor = {K\"{a}rkk\"{a}inen, Juha and Radoszewski, Jakub and Rytter, Wojciech}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2017.24}, URN = {urn:nbn:de:0030-drops-73460}, doi = {10.4230/LIPIcs.CPM.2017.24}, annote = {Keywords: shortest unique substrings, maximal unique substrings} } @InProceedings{amir_et_al:LIPIcs.CPM.2017.25, author = {Amir, Amihood and Levy, Avivit and Lewenstein, Moshe and Lubin, Ronit and Porat, Benny}, title = {{Can We Recover the Cover?}}, booktitle = {28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017)}, pages = {25:1--25:15}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-039-2}, ISSN = {1868-8969}, year = {2017}, volume = {78}, editor = {K\"{a}rkk\"{a}inen, Juha and Radoszewski, Jakub and Rytter, Wojciech}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2017.25}, URN = {urn:nbn:de:0030-drops-73190}, doi = {10.4230/LIPIcs.CPM.2017.25}, annote = {Keywords: periodicity, quasi-periodicity, cover, approximate cover, data recovery} } @InProceedings{amir_et_al:LIPIcs.CPM.2017.26, author = {Amir, Amihood and Levy, Avivit and Lubin, Ronit and Porat, Ely}, title = {{Approximate Cover of Strings}}, booktitle = {28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017)}, pages = {26:1--26:14}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-039-2}, ISSN = {1868-8969}, year = {2017}, volume = {78}, editor = {K\"{a}rkk\"{a}inen, Juha and Radoszewski, Jakub and Rytter, Wojciech}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2017.26}, URN = {urn:nbn:de:0030-drops-73189}, doi = {10.4230/LIPIcs.CPM.2017.26}, annote = {Keywords: periodicity, quasi-periodicity, cover, approximate cover} } @InProceedings{bulteau_et_al:LIPIcs.CPM.2017.27, author = {Bulteau, Laurent and Fertin, Guillaume and Komusiewicz, Christian}, title = {{Beyond Adjacency Maximization: Scaffold Filling for New String Distances}}, booktitle = {28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017)}, pages = {27:1--27:17}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-039-2}, ISSN = {1868-8969}, year = {2017}, volume = {78}, editor = {K\"{a}rkk\"{a}inen, Juha and Radoszewski, Jakub and Rytter, Wojciech}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2017.27}, URN = {urn:nbn:de:0030-drops-73364}, doi = {10.4230/LIPIcs.CPM.2017.27}, annote = {Keywords: computational biology, strings, FPT algorithms, kernelization} } @InProceedings{lafond_et_al:LIPIcs.CPM.2017.28, author = {Lafond, Manuel and Scornavacca, Celine}, title = {{On the Weighted Quartet Consensus Problem}}, booktitle = {28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017)}, pages = {28:1--28:18}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-039-2}, ISSN = {1868-8969}, year = {2017}, volume = {78}, editor = {K\"{a}rkk\"{a}inen, Juha and Radoszewski, Jakub and Rytter, Wojciech}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2017.28}, URN = {urn:nbn:de:0030-drops-73284}, doi = {10.4230/LIPIcs.CPM.2017.28}, annote = {Keywords: phylogenetic tree, consensus tree, quartets, complexity, fixed-parameter tractability} } @InProceedings{cairo_et_al:LIPIcs.CPM.2017.29, author = {Cairo, Massimo and Medvedev, Paul and Obscura Acosta, Nidia and Rizzi, Romeo and Tomescu, Alexandru I.}, title = {{Optimal Omnitig Listing for Safe and Complete Contig Assembly}}, booktitle = {28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017)}, pages = {29:1--29:12}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-039-2}, ISSN = {1868-8969}, year = {2017}, volume = {78}, editor = {K\"{a}rkk\"{a}inen, Juha and Radoszewski, Jakub and Rytter, Wojciech}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2017.29}, URN = {urn:nbn:de:0030-drops-73423}, doi = {10.4230/LIPIcs.CPM.2017.29}, annote = {Keywords: genome assembly, graph algorithm, edge-covering walk, strong bridge} } @InProceedings{pibiri_et_al:LIPIcs.CPM.2017.30, author = {Pibiri, Giulio Ermanno and Venturini, Rossano}, title = {{Dynamic Elias-Fano Representation}}, booktitle = {28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017)}, pages = {30:1--30:14}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-039-2}, ISSN = {1868-8969}, year = {2017}, volume = {78}, editor = {K\"{a}rkk\"{a}inen, Juha and Radoszewski, Jakub and Rytter, Wojciech}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2017.30}, URN = {urn:nbn:de:0030-drops-73244}, doi = {10.4230/LIPIcs.CPM.2017.30}, annote = {Keywords: succinct data structures, integer sets, predecessor problem, Elias-Fano} } @InProceedings{barbay_et_al:LIPIcs.CPM.2017.31, author = {Barbay, J\'{e}r\'{e}my and Ochoa, Carlos and Satti, Srinivasa Rao}, title = {{Synergistic Solutions on MultiSets}}, booktitle = {28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017)}, pages = {31:1--31:14}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-039-2}, ISSN = {1868-8969}, year = {2017}, volume = {78}, editor = {K\"{a}rkk\"{a}inen, Juha and Radoszewski, Jakub and Rytter, Wojciech}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2017.31}, URN = {urn:nbn:de:0030-drops-73441}, doi = {10.4230/LIPIcs.CPM.2017.31}, annote = {Keywords: deferred data structure, multivariate analysis, quick sort, select} }