LIPIcs, Volume 88, WABI 2017

• Russell Schwartz and Knut Reinert LIPIcs, Volume 88, WABI'17, Complete Volume 10.4230/LIPIcs.WABI.2017
• Russell Schwartz and Knut Reinert Front Matter, Table of Contents, Preface, List of Authors 10.4230/LIPIcs.WABI.2017.0
• Bahar Alipanahi, Leena Salmela, Simon J. Puglisi, Martin Muggli, and Christina Boucher Disentangled Long-Read De Bruijn Graphs via Optical Maps 10.4230/LIPIcs.WABI.2017.1
• Md. Shamsuzzoha Bayzid and Tandy Warnow Gene Tree Parsimony for Incomplete Gene Trees 10.4230/LIPIcs.WABI.2017.2
• Brian Brubach, Jay Ghurye, Mihai Pop, and Aravind Srinivasan Better Greedy Sequence Clustering with Fast Banded Alignment 10.4230/LIPIcs.WABI.2017.3
• Yannis Almirantis, Panagiotis Charalampopoulos, Jia Gao, Costas S. Iliopoulos, Manal Mohamed, Solon P. Pissis, and Dimitris Polychronopoulos Optimal Computation of Overabundant Words 10.4230/LIPIcs.WABI.2017.4
• Michal Aleksander Ciach, Anna Muszewska, and Pawel Górecki Detecting Locus Acquisition Events in Gene Trees 10.4230/LIPIcs.WABI.2017.5
• Amir H. Bayegan and Peter Clote An IP Algorithm for RNA Folding Trajectories 10.4230/LIPIcs.WABI.2017.6
• Samuele Girotto, Matteo Comin, and Cinzia Pizzi Fast Spaced Seed Hashing 10.4230/LIPIcs.WABI.2017.7
• Nadia El-Mabrouk and Aïda Ouangraoua A General Framework for Gene Tree Correction Based on Duplication-Loss Reconciliation 10.4230/LIPIcs.WABI.2017.8
• Maxime Crochemore, Alexandre P. Francisco, Solon P. Pissis, and Cátia Vaz Towards Distance-Based Phylogenetic Inference in Average-Case Linear-Time 10.4230/LIPIcs.WABI.2017.9
• Mohamed K. Gunady, Steffen Cornwell, Stephen M. Mount, and Héctor Corrada Bravo Yanagi: Transcript Segment Library Construction for RNA-Seq Quantification 10.4230/LIPIcs.WABI.2017.10
• Chenyue W. Hu, Hanyang Li, and Amina A. Qutub Shrinkage Clustering: A Fast and Size-Constrained Algorithm for Biomedical Applications 10.4230/LIPIcs.WABI.2017.11
• Hosna Jabbari, Ian Wark, Carlo Montemagno, and Sebastian Will Sparsification Enables Predicting Kissing Hairpin Pseudoknot Structures of Long RNAs in Practice 10.4230/LIPIcs.WABI.2017.12
• Jongkyu Kim and Knut Reinert Vaquita: Fast and Accurate Identification of Structural Variation Using Combined Evidence 10.4230/LIPIcs.WABI.2017.13
• Anastasiia Abramova and Anton Korobeynikov Assessing the Significance of Peptide Spectrum Match Scores 10.4230/LIPIcs.WABI.2017.14
• Shunfu Mao, Soheil Mohajer, Kannan Ramachandran, David Tse, and Sreeram Kannan abSNP: RNA-Seq SNP Calling in Repetitive Regions via Abundance Estimation 10.4230/LIPIcs.WABI.2017.15
• Sarvesh Nikumbh, Peter Ebert, and Nico Pfeifer All Fingers Are Not the Same: Handling Variable-Length Sequences in a Discriminative Setting Using Conformal Multi-Instance Kernels 10.4230/LIPIcs.WABI.2017.16
• Nikolai Nojgaard, Manuela Geiß, Daniel Merkle, Peter F. Stadler, Nicolas Wieseke, and Marc Hellmuth Forbidden Time Travel: Characterization of Time-Consistent Tree Reconciliation Maps 10.4230/LIPIcs.WABI.2017.17
• Fatemeh Almodaresi, Prashant Pandey, and Rob Patro Rainbowfish: A Succinct Colored de Bruijn Graph Representation 10.4230/LIPIcs.WABI.2017.18
• Anton Polishko, Md. Abid Hasan, Weihua Pan, Evelien M. Bunnik, Karine Le Roch, and Stefano Lonardi ThIEF: Finding Genome-wide Trajectories of Epigenetics Marks 10.4230/LIPIcs.WABI.2017.19
• Petr Procházka and Jan Holub Byte-Aligned Pattern Matching in Encoded Genomic Sequences 10.4230/LIPIcs.WABI.2017.20
• Jens Quedenfeld and Sven Rahmann Analysis of Min-Hashing for Variant Tolerant DNA Read Mapping 10.4230/LIPIcs.WABI.2017.21
• Abbas Roayaei Ardakany and Stefano Lonardi Efficient and Accurate Detection of Topologically Associating Domains from Contact Maps 10.4230/LIPIcs.WABI.2017.22
• Nidhi Shah, Stephen F. Altschul, and Mihai Pop Outlier Detection in BLAST Hits 10.4230/LIPIcs.WABI.2017.23
• Pijus Simonaitis and Krister M. Swenson Finding Local Genome Rearrangements 10.4230/LIPIcs.WABI.2017.24
• Jarkko Toivonen, Jussi Taipale, and Esko Ukkonen Seed-driven Learning of Position Probability Matrices from Large Sequence Sets 10.4230/LIPIcs.WABI.2017.25
• Yves Frank, Tomas Hruz, Thomas Tschager, and Valentin Venzin Improved De Novo Peptide Sequencing using LC Retention Time Information 10.4230/LIPIcs.WABI.2017.26
• Sarah Christensen, Erin K. Molloy, Pranjal Vachaspati, and Tandy Warnow Optimal Completion of Incomplete Gene Trees in Polynomial Time Using OCTAL 10.4230/LIPIcs.WABI.2017.27