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        <datestamp>2024-03-06T10:54:35Z</datestamp>
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          <dc:title>Improved Lower and Upper Bounds on the Tile Complexity of Uniquely Self-Assembling a Thin Rectangle Non-Cooperatively in 3D</dc:title>
          <dc:creator>Furcy, David</dc:creator>
          <dc:creator>Summers, Scott M.</dc:creator>
          <dc:creator>Withers, Logan</dc:creator>
          <dc:subject>Self-assembly</dc:subject>
          <dc:subject>algorithmic self-assembly</dc:subject>
          <dc:subject>tile self-assembly</dc:subject>
          <dc:description>We investigate a fundamental question regarding a benchmark class of shapes in one of the simplest, yet most widely utilized abstract models of algorithmic tile self-assembly. More specifically, we study the directed tile complexity of a k × N thin rectangle in Winfree’s ubiquitous abstract Tile Assembly Model, assuming that cooperative binding cannot be enforced (temperature-1 self-assembly) and that tiles are allowed to be placed at most one step into the third dimension (just-barely 3D). While the directed tile complexities of a square and a scaled-up version of any algorithmically specified shape at temperature 1 in just-barely 3D are both asymptotically the same as they are (respectively) at temperature 2 in 2D, the (nearly tight) bounds on the directed tile complexity of a thin rectangle at temperature 2 in 2D are not currently known to hold at temperature 1 in just-barely 3D. Motivated by this discrepancy, we establish new lower and upper bounds on the directed tile complexity of a thin rectangle at temperature 1 in just-barely 3D. The proof of our upper bound is based on the construction of a novel, just-barely 3D temperature-1 self-assembling counter. Each value of the counter is comprised of k-2 digits, represented in a geometrically staggered fashion within k rows. This nearly optimal digit density, along with the base of the counter, which is proportional to N^{1/(k-1)}, results in an upper bound of O(N^{1/(k-1)} + log N), and is an asymptotic improvement over the previous state-of-the-art upper bound. On our way to proving our lower bound, we develop a new, more powerful type of specialized Window Movie Lemma that lets us bound the number of "sufficiently similar" ways to assign glues to a set (rather than a sequence) of fixed locations. Consequently, our lower bound, Ω(N^{1/k}), is also an asymptotic improvement over the previous state-of-the-art lower bound.</dc:description>
          <dc:publisher>Schloss Dagstuhl – Leibniz-Zentrum für Informatik</dc:publisher>
          <dc:contributor>David Furcy and Scott M. Summers and Logan Withers</dc:contributor>
          <dc:date>2021</dc:date>
          <dc:relation>Is Part Of LIPIcs, Volume 205, 27th International Conference on DNA Computing and Molecular Programming (DNA 27) (2021)</dc:relation>
          <dc:type>InProceedings</dc:type>
          <dc:type>Text</dc:type>
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          <dc:identifier>doi:10.4230/LIPIcs.DNA.27.4</dc:identifier>
          <dc:identifier>urn:nbn:de:0030-drops-146716</dc:identifier>
          <dc:identifier>https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.27.4</dc:identifier>
          <dc:language>eng</dc:language>
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