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        <identifier>oai:drops-oai.dagstuhl.de:20232</identifier>
        <datestamp>2024-07-02T07:52:53Z</datestamp>
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          <dc:title>Breaking a Barrier in Constructing Compact Indexes for Parameterized Pattern Matching</dc:title>
          <dc:creator>Iseri, Kento</dc:creator>
          <dc:creator>I, Tomohiro</dc:creator>
          <dc:creator>Hendrian, Diptarama</dc:creator>
          <dc:creator>Köppl, Dominik</dc:creator>
          <dc:creator>Yoshinaka, Ryo</dc:creator>
          <dc:creator>Shinohara, Ayumi</dc:creator>
          <dc:subject>Index for parameterized pattern matching</dc:subject>
          <dc:subject>Parameterized Burrows-Wheeler Transform</dc:subject>
          <dc:subject>Online construction</dc:subject>
          <dc:description>A parameterized string (p-string) is a string over an alphabet (Σ_s ∪ Σ_p), where Σ_s and Σ_p are disjoint alphabets for static symbols (s-symbols) and for parameter symbols (p-symbols), respectively. Two p-strings x and y are said to parameterized match (p-match) if and only if x can be transformed into y by applying a bijection on Σ_p to every occurrence of p-symbols in x. The indexing problem for p-matching is to preprocess a p-string T of length n so that we can efficiently find the occurrences of substrings of T that p-match with a given pattern. Let σ_s and respectively σ_p be the numbers of distinct s-symbols and p-symbols that appear in T and σ = σ_s + σ_p. Extending the Burrows-Wheeler Transform (BWT) based index for exact string pattern matching, Ganguly et al. [SODA 2017] proposed parameterized BWTs (pBWTs) to design the first compact index for p-matching, and posed an open problem on how to construct the pBWT-based index in compact space, i.e., in O(n lg |Σ_s ∪ Σ_p|) bits of space. Hashimoto et al. [SPIRE 2022] showed how to construct the pBWT for T, under the assumption that Σ_s ∪ Σ_p = [0..O(σ)], in O(n lg σ) bits of space and O(n (σ_p lg n)/(lg lg n)) time in an online manner while reading the symbols of T from right to left. In this paper, we refine Hashimoto et al.’s algorithm to work in O(n lg σ) bits of space and O(n (lg σ_p lg n)/(lg lg n)) time in a more general assumption that Σ_s ∪ Σ_p = [0..n^{O(1)}]. Our result has an immediate application to constructing parameterized suffix arrays in O(n (lg σ_p lg n)/(lg lg n)) time and O(n lg σ) bits of working space. We also show that our data structure can support backward search, a core procedure of BWT-based indexes, at any stage of the online construction, making it the first compact index for p-matching that can be constructed in compact space and even in an online manner.</dc:description>
          <dc:publisher>Schloss Dagstuhl – Leibniz-Zentrum für Informatik</dc:publisher>
          <dc:contributor>Kento Iseri and Tomohiro I and Diptarama Hendrian and Dominik Köppl and Ryo Yoshinaka and Ayumi Shinohara</dc:contributor>
          <dc:date>2024</dc:date>
          <dc:relation>Is Part Of LIPIcs, Volume 297, 51st International Colloquium on Automata, Languages, and Programming (ICALP 2024)</dc:relation>
          <dc:type>InProceedings</dc:type>
          <dc:type>Text</dc:type>
          <dc:type>doc-type:ResearchArticle</dc:type>
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          <dc:format>application/pdf</dc:format>
          <dc:identifier>doi:10.4230/LIPIcs.ICALP.2024.89</dc:identifier>
          <dc:identifier>urn:nbn:de:0030-drops-202324</dc:identifier>
          <dc:identifier>https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2024.89</dc:identifier>
          <dc:language>eng</dc:language>
          <dc:rights>https://creativecommons.org/licenses/by/4.0/legalcode</dc:rights>
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