150 Search Results for "Yang, Yang"

Volume

OASIcs, Volume 80

2nd Workshop on Fog Computing and the IoT (Fog-IoT 2020)

Fog-IoT 2020, April 21, 2020, Sydney, Australia

Editors: Anton Cervin and Yang Yang

Document
Invited Talk
DOI: 10.4230/LIPIcs.ICDT.2024.2
How Database Theory Helps Teach Relational Queries in Database Education (Invited Talk)

Authors: Sudeepa Roy, Amir Gilad, Yihao Hu, Hanze Meng, Zhengjie Miao, Kristin Stephens-Martinez, and Jun Yang

Published in: LIPIcs, Volume 290, 27th International Conference on Database Theory (ICDT 2024)

Abstract
Data analytics skills have become an indispensable part of any education that seeks to prepare its students for the modern workforce. Essential in this skill set is the ability to work with structured relational data. Relational queries are based on logic and may be declarative in nature, posing new challenges to novices and students. Manual teaching resources being limited and enrollment growing rapidly, automated tools that help students debug queries and explain errors are potential game-changers in database education. We present a suite of tools built on the foundations of database theory that has been used by over 1600 students in database classes at Duke University, showcasing a high-impact application of database theory in database education.
Cite as

Sudeepa Roy, Amir Gilad, Yihao Hu, Hanze Meng, Zhengjie Miao, Kristin Stephens-Martinez, and Jun Yang. How Database Theory Helps Teach Relational Queries in Database Education (Invited Talk). In 27th International Conference on Database Theory (ICDT 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 290, pp. 2:1-2:9, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

Copy BibTex To Clipboard

@InProceedings{roy_et_al:LIPIcs.ICDT.2024.2,
  author =	{Roy, Sudeepa and Gilad, Amir and Hu, Yihao and Meng, Hanze and Miao, Zhengjie and Stephens-Martinez, Kristin and Yang, Jun},
  title =	{{How Database Theory Helps Teach Relational Queries in Database Education}},
  booktitle =	{27th International Conference on Database Theory (ICDT 2024)},
  pages =	{2:1--2:9},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-312-6},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{290},
  editor =	{Cormode, Graham and Shekelyan, Michael},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICDT.2024.2},
  URN =		{urn:nbn:de:0030-drops-197841},
  doi =		{10.4230/LIPIcs.ICDT.2024.2},
  annote =	{Keywords: Query Debugging, SQL, Relational Algebra, Relational Calculus, Database Education, Boolean Provenance}
}
Document
DOI: 10.4230/LIPIcs.ICDT.2024.9
Approximating Single-Source Personalized PageRank with Absolute Error Guarantees

Authors: Zhewei Wei, Ji-Rong Wen, and Mingji Yang

Published in: LIPIcs, Volume 290, 27th International Conference on Database Theory (ICDT 2024)

Abstract
Personalized PageRank (PPR) is an extensively studied and applied node proximity measure in graphs. For a pair of nodes s and t on a graph G = (V,E), the PPR value π(s,t) is defined as the probability that an α-discounted random walk from s terminates at t, where the walk terminates with probability α at each step. We study the classic Single-Source PPR query, which asks for PPR approximations from a given source node s to all nodes in the graph. Specifically, we aim to provide approximations with absolute error guarantees, ensuring that the resultant PPR estimates π̂(s,t) satisfy max_{t ∈ V} |π̂(s,t)-π(s,t)| ≤ ε for a given error bound ε. We propose an algorithm that achieves this with high probability, with an expected running time of - Õ(√m/ε) for directed graphs, where m = |E|; - Õ(√{d_max}/ε) for undirected graphs, where d_max is the maximum node degree in the graph; - Õ(n^{γ-1/2}/ε) for power-law graphs, where n = |V| and γ ∈ (1/2,1) is the extent of the power law. These sublinear bounds improve upon existing results. We also study the case when degree-normalized absolute error guarantees are desired, requiring max_{t ∈ V} |π̂(s,t)/d(t)-π(s,t)/d(t)| ≤ ε_d for a given error bound ε_d, where the graph is undirected and d(t) is the degree of node t. We give an algorithm that provides this error guarantee with high probability, achieving an expected complexity of Õ(√{∑_{t ∈ V} π(s,t)/d(t)}/ε_d). This improves over the previously known O(1/ε_d) complexity.
Cite as

Zhewei Wei, Ji-Rong Wen, and Mingji Yang. Approximating Single-Source Personalized PageRank with Absolute Error Guarantees. In 27th International Conference on Database Theory (ICDT 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 290, pp. 9:1-9:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

Copy BibTex To Clipboard

@InProceedings{wei_et_al:LIPIcs.ICDT.2024.9,
  author =	{Wei, Zhewei and Wen, Ji-Rong and Yang, Mingji},
  title =	{{Approximating Single-Source Personalized PageRank with Absolute Error Guarantees}},
  booktitle =	{27th International Conference on Database Theory (ICDT 2024)},
  pages =	{9:1--9:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-312-6},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{290},
  editor =	{Cormode, Graham and Shekelyan, Michael},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICDT.2024.9},
  URN =		{urn:nbn:de:0030-drops-197911},
  doi =		{10.4230/LIPIcs.ICDT.2024.9},
  annote =	{Keywords: Graph Algorithms, Sublinear Algorithms, Personalized PageRank}
}
Document
DOI: 10.4230/LIPIcs.ICDT.2024.18
Computing Data Distribution from Query Selectivities

Authors: Pankaj K. Agarwal, Rahul Raychaudhury, Stavros Sintos, and Jun Yang

Published in: LIPIcs, Volume 290, 27th International Conference on Database Theory (ICDT 2024)

Abstract
We are given a set 𝒵 = {(R_1,s_1), …, (R_n,s_n)}, where each R_i is a range in ℝ^d, such as rectangle or ball, and s_i ∈ [0,1] denotes its selectivity. The goal is to compute a small-size discrete data distribution 𝒟 = {(q₁,w₁),…, (q_m,w_m)}, where q_j ∈ ℝ^d and w_j ∈ [0,1] for each 1 ≤ j ≤ m, and ∑_{1≤j≤m} w_j = 1, such that 𝒟 is the most consistent with 𝒵, i.e., err_p(𝒟,𝒵) = 1/n ∑_{i = 1}ⁿ |s_i - ∑_{j=1}^m w_j⋅1(q_j ∈ R_i)|^p is minimized. In a database setting, 𝒵 corresponds to a workload of range queries over some table, together with their observed selectivities (i.e., fraction of tuples returned), and 𝒟 can be used as compact model for approximating the data distribution within the table without accessing the underlying contents. In this paper, we obtain both upper and lower bounds for this problem. In particular, we show that the problem of finding the best data distribution from selectivity queries is NP-complete. On the positive side, we describe a Monte Carlo algorithm that constructs, in time O((n+δ^{-d}) δ^{-2} polylog n), a discrete distribution 𝒟̃ of size O(δ^{-2}), such that err_p(𝒟̃,𝒵) ≤ min_𝒟 err_p(𝒟,𝒵)+δ (for p = 1,2,∞) where the minimum is taken over all discrete distributions. We also establish conditional lower bounds, which strongly indicate the infeasibility of relative approximations as well as removal of the exponential dependency on the dimension for additive approximations. This suggests that significant improvements to our algorithm are unlikely.
Cite as

Pankaj K. Agarwal, Rahul Raychaudhury, Stavros Sintos, and Jun Yang. Computing Data Distribution from Query Selectivities. In 27th International Conference on Database Theory (ICDT 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 290, pp. 18:1-18:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

Copy BibTex To Clipboard

@InProceedings{agarwal_et_al:LIPIcs.ICDT.2024.18,
  author =	{Agarwal, Pankaj K. and Raychaudhury, Rahul and Sintos, Stavros and Yang, Jun},
  title =	{{Computing Data Distribution from Query Selectivities}},
  booktitle =	{27th International Conference on Database Theory (ICDT 2024)},
  pages =	{18:1--18:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-312-6},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{290},
  editor =	{Cormode, Graham and Shekelyan, Michael},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICDT.2024.18},
  URN =		{urn:nbn:de:0030-drops-198007},
  doi =		{10.4230/LIPIcs.ICDT.2024.18},
  annote =	{Keywords: selectivity queries, discrete distributions, Multiplicative Weights Update, eps-approximation, learnable functions, depth problem, arrangement}
}
Document
DOI: 10.4230/LIPIcs.STACS.2024.43
A Faster Algorithm for Constructing the Frequency Difference Consensus Tree

Authors: Jesper Jansson, Wing-Kin Sung, Seyed Ali Tabatabaee, and Yutong Yang

Published in: LIPIcs, Volume 289, 41st International Symposium on Theoretical Aspects of Computer Science (STACS 2024)

Abstract
A consensus tree is a phylogenetic tree that summarizes the evolutionary relationships inferred from a collection of phylogenetic trees with the same set of leaf labels. Among the many types of consensus trees that have been proposed in the last 50 years, the frequency difference consensus tree is one of the more finely resolved types that retains a large amount of information. This paper presents a new deterministic algorithm for constructing the frequency difference consensus tree. Given k phylogenetic trees with identical sets of n leaf labels, it runs in O(knlog{n}) time, improving the best previously known solution.
Cite as

Jesper Jansson, Wing-Kin Sung, Seyed Ali Tabatabaee, and Yutong Yang. A Faster Algorithm for Constructing the Frequency Difference Consensus Tree. In 41st International Symposium on Theoretical Aspects of Computer Science (STACS 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 289, pp. 43:1-43:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

Copy BibTex To Clipboard

@InProceedings{jansson_et_al:LIPIcs.STACS.2024.43,
  author =	{Jansson, Jesper and Sung, Wing-Kin and Tabatabaee, Seyed Ali and Yang, Yutong},
  title =	{{A Faster Algorithm for Constructing the Frequency Difference Consensus Tree}},
  booktitle =	{41st International Symposium on Theoretical Aspects of Computer Science (STACS 2024)},
  pages =	{43:1--43:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-311-9},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{289},
  editor =	{Beyersdorff, Olaf and Kant\'{e}, Mamadou Moustapha and Kupferman, Orna and Lokshtanov, Daniel},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.STACS.2024.43},
  URN =		{urn:nbn:de:0030-drops-197539},
  doi =		{10.4230/LIPIcs.STACS.2024.43},
  annote =	{Keywords: phylogenetic tree, frequency difference consensus tree, tree algorithm, centroid path decomposition, max-Manhattan Skyline Problem}
}
Document
DOI: 10.4230/LIPIcs.CSL.2024.47
Towards Univalent Reference Types: The Impact of Univalence on Denotational Semantics

Authors: Jonathan Sterling, Daniel Gratzer, and Lars Birkedal

Published in: LIPIcs, Volume 288, 32nd EACSL Annual Conference on Computer Science Logic (CSL 2024)

Abstract
We develop a denotational semantics for general reference types in an impredicative version of guarded homotopy type theory, an adaptation of synthetic guarded domain theory to Voevodsky’s univalent foundations. We observe for the first time the profound impact of univalence on the denotational semantics of mutable state. Univalence automatically ensures that all computations are invariant under symmetries of the heap - a bountiful source of program equivalences. In particular, even the most simplistic univalent model enjoys many new equations that do not hold when the same constructions are carried out in the universes of traditional set-level (extensional) type theory.
Cite as

Jonathan Sterling, Daniel Gratzer, and Lars Birkedal. Towards Univalent Reference Types: The Impact of Univalence on Denotational Semantics. In 32nd EACSL Annual Conference on Computer Science Logic (CSL 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 288, pp. 47:1-47:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

Copy BibTex To Clipboard

@InProceedings{sterling_et_al:LIPIcs.CSL.2024.47,
  author =	{Sterling, Jonathan and Gratzer, Daniel and Birkedal, Lars},
  title =	{{Towards Univalent Reference Types: The Impact of Univalence on Denotational Semantics}},
  booktitle =	{32nd EACSL Annual Conference on Computer Science Logic (CSL 2024)},
  pages =	{47:1--47:21},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-310-2},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{288},
  editor =	{Murano, Aniello and Silva, Alexandra},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops-dev.dagstuhl.de/entities/document/10.4230/LIPIcs.CSL.2024.47},
  URN =		{urn:nbn:de:0030-drops-196901},
  doi =		{10.4230/LIPIcs.CSL.2024.47},
  annote =	{Keywords: univalent foundations, homotopy type theory, impredicative encodings, synthetic guarded domain theory, guarded recursion, higher-order store, reference types}
}
Document
DOI: 10.4230/LIPIcs.ISAAC.2023.45
Improved Approximation Algorithm for Capacitated Facility Location with Uniform Facility Cost

Authors: Mong-Jen Kao

Published in: LIPIcs, Volume 283, 34th International Symposium on Algorithms and Computation (ISAAC 2023)

Abstract
We consider the hard-capacitated facility location problem with uniform facility cost (CFL-UFC). This problem arises as an indicator variation between the general CFL problem and the uncapacitated facility location (UFL) problem, and is related to the profound capacitated k-median problem (CKM). In this work, we present a rounding-based 4-approximation algorithm for this problem, built on a two-staged rounding scheme that incorporates a set of novel ideas and also techniques developed in the past for both facility location and capacitated covering problems. Our result improves the decades-old LP-based ratio of 5 for this problem due to Levi et al. since 2004. We believe that the techniques developed in this work are of independent interests and may further lead to insights and implications for related problems.
Cite as

Mong-Jen Kao. Improved Approximation Algorithm for Capacitated Facility Location with Uniform Facility Cost. In 34th International Symposium on Algorithms and Computation (ISAAC 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 283, pp. 45:1-45:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

Copy BibTex To Clipboard

@InProceedings{kao:LIPIcs.ISAAC.2023.45,
  author =	{Kao, Mong-Jen},
  title =	{{Improved Approximation Algorithm for Capacitated Facility Location with Uniform Facility Cost}},
  booktitle =	{34th International Symposium on Algorithms and Computation (ISAAC 2023)},
  pages =	{45:1--45:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-289-1},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{283},
  editor =	{Iwata, Satoru and Kakimura, Naonori},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops-dev.dagstuhl.de/entities/document/10.4230/LIPIcs.ISAAC.2023.45},
  URN =		{urn:nbn:de:0030-drops-193474},
  doi =		{10.4230/LIPIcs.ISAAC.2023.45},
  annote =	{Keywords: Capacitated facility location, Hard capacities, Uniform facility cost}
}
Document
DOI: 10.4230/LIPIcs.ISAAC.2023.50
On Min-Max Graph Balancing with Strict Negative Correlation Constraints

Authors: Ting-Yu Kuo, Yu-Han Chen, Andrea Frosini, Sun-Yuan Hsieh, Shi-Chun Tsai, and Mong-Jen Kao

Published in: LIPIcs, Volume 283, 34th International Symposium on Algorithms and Computation (ISAAC 2023)

Abstract
We consider the min-max graph balancing problem with strict negative correlation (SNC) constraints. The graph balancing problem arises as an equivalent formulation of the classic unrelated machine scheduling problem, where we are given a hypergraph G = (V,E) with vertex-dependent edge weight function p: E×V ↦ ℤ^{≥0} that represents the processing time of the edges (jobs). The SNC constraints, which are given as edge subsets C_1,C_2,…,C_k, require that the edges in the same subset cannot be assigned to the same vertex at the same time. Under these constraints, the goal is to compute an edge orientation (assignment) that minimizes the maximum workload of the vertices. In this paper, we conduct a general study on the approximability of this problem. First, we show that, in the presence of SNC constraints, the case with max_{e ∈ E} |e| = max_i |C_i| = 2 is the only case for which approximation solutions can be obtained. Further generalization on either direction, e.g., max_{e ∈ E} |e| or max_i |C_i|, will directly make computing a feasible solution an NP-complete problem to solve. Then, we present a 2-approximation algorithm for the case with max_{e ∈ E} |e| = max_i |C_i| = 2, based on a set of structural simplifications and a tailored assignment LP for this problem. We note that our approach is general and can be applied to similar settings, e.g., scheduling with SNC constraints to minimize the weighted completion time, to obtain similar approximation guarantees. Further cases are discussed to describe the landscape of the approximability of this prbolem. For the case with |V| ≤ 2, which is already known to be NP-hard, we present a fully-polynomial time approximation scheme (FPTAS). On the other hand, we show that the problem is at least as hard as vertex cover to approximate when |V| ≥ 3.
Cite as

Ting-Yu Kuo, Yu-Han Chen, Andrea Frosini, Sun-Yuan Hsieh, Shi-Chun Tsai, and Mong-Jen Kao. On Min-Max Graph Balancing with Strict Negative Correlation Constraints. In 34th International Symposium on Algorithms and Computation (ISAAC 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 283, pp. 50:1-50:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

Copy BibTex To Clipboard

@InProceedings{kuo_et_al:LIPIcs.ISAAC.2023.50,
  author =	{Kuo, Ting-Yu and Chen, Yu-Han and Frosini, Andrea and Hsieh, Sun-Yuan and Tsai, Shi-Chun and Kao, Mong-Jen},
  title =	{{On Min-Max Graph Balancing with Strict Negative Correlation Constraints}},
  booktitle =	{34th International Symposium on Algorithms and Computation (ISAAC 2023)},
  pages =	{50:1--50:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-289-1},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{283},
  editor =	{Iwata, Satoru and Kakimura, Naonori},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops-dev.dagstuhl.de/entities/document/10.4230/LIPIcs.ISAAC.2023.50},
  URN =		{urn:nbn:de:0030-drops-193524},
  doi =		{10.4230/LIPIcs.ISAAC.2023.50},
  annote =	{Keywords: Unrelated Scheduling, Graph Balancing, Strict Correlation Constraints}
}
Document
DOI: 10.4230/LIPIcs.ESA.2023.97
Improved Algorithms for Online Rent Minimization Problem Under Unit-Size Jobs

Authors: Enze Sun, Zonghan Yang, and Yuhao Zhang

Published in: LIPIcs, Volume 274, 31st Annual European Symposium on Algorithms (ESA 2023)

Abstract
We consider the Online Rent Minimization problem, where online jobs with release times, deadlines, and processing times must be scheduled on machines that can be rented for a fixed length period of T. The objective is to minimize the number of machine rents. This problem generalizes the Online Machine Minimization problem where machines can be rented for an infinite period, and both problems have an asymptotically optimal competitive ratio of O(log(p_max/p_min)) for general processing times, where p_max and p_min are the maximum and minimum processing times respectively. However, for small values of p_max/p_min, a better competitive ratio can be achieved by assuming unit-size jobs. Under this assumption, Devanur et al. (2014) gave an optimal e-competitive algorithm for Online Machine Minimization, and Chen and Zhang (2022) gave a (3e+7) ≈ 15.16-competitive algorithm for Online Rent Minimization. In this paper, we significantly improve the competitive ratio of the Online Rent Minimization problem under unit size to 6, by using a clean oracle-based online algorithm framework.
Cite as

Enze Sun, Zonghan Yang, and Yuhao Zhang. Improved Algorithms for Online Rent Minimization Problem Under Unit-Size Jobs. In 31st Annual European Symposium on Algorithms (ESA 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 274, pp. 97:1-97:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

Copy BibTex To Clipboard

@InProceedings{sun_et_al:LIPIcs.ESA.2023.97,
  author =	{Sun, Enze and Yang, Zonghan and Zhang, Yuhao},
  title =	{{Improved Algorithms for Online Rent Minimization Problem Under Unit-Size Jobs}},
  booktitle =	{31st Annual European Symposium on Algorithms (ESA 2023)},
  pages =	{97:1--97:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-295-2},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{274},
  editor =	{G{\o}rtz, Inge Li and Farach-Colton, Martin and Puglisi, Simon J. and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops-dev.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2023.97},
  URN =		{urn:nbn:de:0030-drops-187500},
  doi =		{10.4230/LIPIcs.ESA.2023.97},
  annote =	{Keywords: Online Algorithm, Scheduling, Machine Minimization, Rent Minimization}
}
Document
DOI: 10.4230/LIPIcs.ESA.2023.103
Efficient Block Approximate Matrix Multiplication

Authors: Chuhan Yang and Christopher Musco

Published in: LIPIcs, Volume 274, 31st Annual European Symposium on Algorithms (ESA 2023)

Abstract
Randomized matrix algorithms have had significant recent impact on numerical linear algebra. One especially powerful class of methods are algorithms for approximate matrix multiplication based on sampling. Such methods typically sample individual matrix rows and columns using carefully chosen importance sampling probabilities. However, due to practical considerations like memory locality and the preservation of matrix structure, it is often preferable to sample contiguous blocks of rows and columns all together. Recently, (Wu, 2018) addressed this setting by developing an approximate matrix multiplication method based on block sampling. However, the method is inefficient, as it requires knowledge of optimal importance sampling probabilities that are expensive to compute. We address this issue by showing that the method of Wu can be accelerated through the use of a randomized implicit trace estimation method. Doing so allows us to provably reduce the cost of sampling to near-linear in the size of the matrices being multiplied, without impacting the accuracy of the final approximate matrix multiplication. Overall, this yields a fast practical algorithm, which we test on a number of synthetic and real-world data sets. We complement our algorithmic contribution with the first extensive empirical comparison of block algorithms for randomized matrix multiplication. Our method offers a significant runtime advantage over the method of (Wu, 2018) and also outperforms basic uniform sampling of blocks. However, we find another recent method of (Charalambides, 2021) which uses sub-optimal but efficiently computable sampling probabilities often (but not always) offers the best trade-off between speed and accuracy.
Cite as

Chuhan Yang and Christopher Musco. Efficient Block Approximate Matrix Multiplication. In 31st Annual European Symposium on Algorithms (ESA 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 274, pp. 103:1-103:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

Copy BibTex To Clipboard

@InProceedings{yang_et_al:LIPIcs.ESA.2023.103,
  author =	{Yang, Chuhan and Musco, Christopher},
  title =	{{Efficient Block Approximate Matrix Multiplication}},
  booktitle =	{31st Annual European Symposium on Algorithms (ESA 2023)},
  pages =	{103:1--103:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-295-2},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{274},
  editor =	{G{\o}rtz, Inge Li and Farach-Colton, Martin and Puglisi, Simon J. and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops-dev.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2023.103},
  URN =		{urn:nbn:de:0030-drops-187562},
  doi =		{10.4230/LIPIcs.ESA.2023.103},
  annote =	{Keywords: Approximate matrix multiplication, randomized numerical linear algebra, trace estimation}
}
Document
Abstract
DOI: 10.4230/LIPIcs.WABI.2023.8
Quartets Enable Statistically Consistent Estimation of Cell Lineage Trees Under an Unbiased Error and Missingness Model (Abstract)

Authors: Yunheng Han and Erin K. Molloy

Published in: LIPIcs, Volume 273, 23rd International Workshop on Algorithms in Bioinformatics (WABI 2023)

Abstract
Cancer progression and treatment can be informed by reconstructing its evolutionary history from tumor cells [Lim et al., 2020]. Although many methods exist to estimate evolutionary trees (called phylogenies) from molecular sequences, traditional approaches assume the input data are error-free and the output tree is fully resolved. These assumptions are challenged in tumor phylogenetics because single-cell sequencing produces sparse, error-ridden data and because tumors evolve clonally [Jahn et al., 2016; Schwartz and Schäffer, 2017]. Here, we study the theoretical utility of methods based on quartets (four-leaf, unrooted phylogenetic trees) and triplets (three-leaf, rooted phylogenetic trees), in light of these barriers. Quartets and triplets have long been used as the building blocks for reconstructing the evolutionary history of species [Wilkinson et al., 2005]. The reason triplet-based methods (e.g., MP-EST [Liu et al., 2010]) and quartet-based methods (e.g., ASTRAL [Mirarab et al., 2014]) have garnered such success in species phylogenetics is their good statistical properties under the Multi-Species Coalescent (MSC) model [Pamilo and Nei, 1988; Rannala and Yang, 2003]; see Allman et al. (2011) and Degnan (2006) for identifiability results under the MSC model for quartets and triplets, respectively. Inspired by these efforts, we study the utility of quartets and triplets for estimating cell lineage trees under a popular tumor phylogenetics model [Jahn et al., 2016; Ross and Markowetz, 2016; Wu, 2019; Kizilkale et al., 2022] with two phases. First, mutations arise on a (highly unresolved) cell lineage tree according to the infinite sites model, and second, errors (false positives and false negatives) and missing values are introduced to the resulting mutation data in an unbiased fashion, mimicking data produced by single-cell sequencing protocols. This infinite sites plus unbiased error and missingness (IS+UEM) model generates mutations (rather than gene genealogies like the MSC model). However, a quartet (with leaves bijectively labeled by four cells) is implied by a mutation being present in two cells and absent from two cells [Molloy et al., 2021; Springer et al., 2019]; similarly, a triplet (on three cells) is implied by a mutation being present in two cells and absent from one cell. Our main result is that under the IS+UEM, the most probable quartet identifies the unrooted model cell lineage tree on four cells, with a mild assumption: the probability of false negatives and the probability of false positives must not sum to one. Somewhat surprisingly, our identifiability result for quartets does not extend to triplets, with more restrictive assumptions being required for identifiability. These results motivate seeking an unrooted cell lineage tree such that the number of quartets shared between it and the input mutations is maximized. We prove an optimal solution to this problem is a consistent estimator of the unrooted cell lineage tree under the IS+UEM model; this guarantee includes the case where the model tree is highly unresolved, provided that tree error is defined as the number of false negative branches. We therefore conclude by outlining how quartet-based methods might be employed for tumor phylogenetics given other important challenges like copy number aberrations and doublets.
Cite as

Yunheng Han and Erin K. Molloy. Quartets Enable Statistically Consistent Estimation of Cell Lineage Trees Under an Unbiased Error and Missingness Model (Abstract). In 23rd International Workshop on Algorithms in Bioinformatics (WABI 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 273, pp. 8:1-8:2, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

Copy BibTex To Clipboard

@InProceedings{han_et_al:LIPIcs.WABI.2023.8,
  author =	{Han, Yunheng and Molloy, Erin K.},
  title =	{{Quartets Enable Statistically Consistent Estimation of Cell Lineage Trees Under an Unbiased Error and Missingness Model}},
  booktitle =	{23rd International Workshop on Algorithms in Bioinformatics (WABI 2023)},
  pages =	{8:1--8:2},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-294-5},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{273},
  editor =	{Belazzougui, Djamal and Ouangraoua, A\"{i}da},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops-dev.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2023.8},
  URN =		{urn:nbn:de:0030-drops-186347},
  doi =		{10.4230/LIPIcs.WABI.2023.8},
  annote =	{Keywords: Tumor Phylogenetics, Cell Lineage Trees, Quartets, Supertrees, ASTRAL}
}
Document
DOI: 10.4230/LIPIcs.MFCS.2023.77
A Polynomial-Time Algorithm for MCS Partial Search Order on Chordal Graphs

Authors: Guozhen Rong, Yongjie Yang, and Wenjun Li

Published in: LIPIcs, Volume 272, 48th International Symposium on Mathematical Foundations of Computer Science (MFCS 2023)

Abstract
We study the partial search order problem (PSOP) proposed recently by Scheffler [WG 2022]. Given a graph G together with a partial order on the set of vertices of G, this problem determines if there is an 𝒮-ordering that is consistent with the given partial order, where 𝒮 is a graph search paradigm like BFS, DFS, etc. This problem naturally generalizes the end-vertex problem which has received much attention over the past few years. It also generalizes the so-called ℱ-tree recognition problem which has just been studied in the literature recently. Our main contribution is a polynomial-time dynamic programming algorithm for the PSOP of the maximum cardinality search (MCS) restricted to chordal graphs. This resolves one of the most intriguing open questions left in the work of Scheffler [WG 2022]. To obtain our result, we propose the notion of layer structure and study numerous related structural properties which might be of independent interest.
Cite as

Guozhen Rong, Yongjie Yang, and Wenjun Li. A Polynomial-Time Algorithm for MCS Partial Search Order on Chordal Graphs. In 48th International Symposium on Mathematical Foundations of Computer Science (MFCS 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 272, pp. 77:1-77:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

Copy BibTex To Clipboard

@InProceedings{rong_et_al:LIPIcs.MFCS.2023.77,
  author =	{Rong, Guozhen and Yang, Yongjie and Li, Wenjun},
  title =	{{A Polynomial-Time Algorithm for MCS Partial Search Order on Chordal Graphs}},
  booktitle =	{48th International Symposium on Mathematical Foundations of Computer Science (MFCS 2023)},
  pages =	{77:1--77:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-292-1},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{272},
  editor =	{Leroux, J\'{e}r\^{o}me and Lombardy, Sylvain and Peleg, David},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops-dev.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2023.77},
  URN =		{urn:nbn:de:0030-drops-186118},
  doi =		{10.4230/LIPIcs.MFCS.2023.77},
  annote =	{Keywords: partial search order, maximum cardinality search, chordal graphs, clique graphs, dynamic programming}
}
Document
DOI: 10.4230/LIPIcs.MFCS.2023.84
Dependent k-Set Packing on Polynomoids

Authors: Meng-Tsung Tsai, Shi-Chun Tsai, and Tsung-Ta Wu

Published in: LIPIcs, Volume 272, 48th International Symposium on Mathematical Foundations of Computer Science (MFCS 2023)

Abstract
Specialized hereditary systems, e.g., matroids, are known to have many applications in algorithm design. We define a new notion called d-polynomoid as a hereditary system (E, ℱ ⊆ 2^E) so that every two maximal sets in ℱ have less than d elements in common. We study the problem that, given a d-polynomoid (E, ℱ), asks if the ground set E contains 𝓁 disjoint k-subsets that are not in ℱ, and obtain a complexity trichotomy result for all pairs of k ≥ 1 and d ≥ 0. Our algorithmic result yields a sufficient and necessary condition that decides whether each hypergraph in some classes of r-uniform hypergraphs has a perfect matching, which has a number of algorithmic applications.
Cite as

Meng-Tsung Tsai, Shi-Chun Tsai, and Tsung-Ta Wu. Dependent k-Set Packing on Polynomoids. In 48th International Symposium on Mathematical Foundations of Computer Science (MFCS 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 272, pp. 84:1-84:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

Copy BibTex To Clipboard

@InProceedings{tsai_et_al:LIPIcs.MFCS.2023.84,
  author =	{Tsai, Meng-Tsung and Tsai, Shi-Chun and Wu, Tsung-Ta},
  title =	{{Dependent k-Set Packing on Polynomoids}},
  booktitle =	{48th International Symposium on Mathematical Foundations of Computer Science (MFCS 2023)},
  pages =	{84:1--84:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-292-1},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{272},
  editor =	{Leroux, J\'{e}r\^{o}me and Lombardy, Sylvain and Peleg, David},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops-dev.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2023.84},
  URN =		{urn:nbn:de:0030-drops-186180},
  doi =		{10.4230/LIPIcs.MFCS.2023.84},
  annote =	{Keywords: Hereditary Systems, Hypergraph Matchings, Compleixty Trichotomy}
}
Document
DOI: 10.4230/LIPIcs.SAT.2023.28
Explaining SAT Solving Using Causal Reasoning

Authors: Jiong Yang, Arijit Shaw, Teodora Baluta, Mate Soos, and Kuldeep S. Meel

Published in: LIPIcs, Volume 271, 26th International Conference on Theory and Applications of Satisfiability Testing (SAT 2023)

Abstract
The past three decades have witnessed notable success in designing efficient SAT solvers, with modern solvers capable of solving industrial benchmarks containing millions of variables in just a few seconds. The success of modern SAT solvers owes to the widely-used CDCL algorithm, which lacks comprehensive theoretical investigation. Furthermore, it has been observed that CDCL solvers still struggle to deal with specific classes of benchmarks comprising only hundreds of variables, which contrasts with their widespread use in real-world applications. Consequently, there is an urgent need to uncover the inner workings of these seemingly weak yet powerful black boxes. In this paper, we present a first step towards this goal by introducing an approach called {CausalSAT}, which employs causal reasoning to gain insights into the functioning of modern SAT solvers. {CausalSAT} initially generates observational data from the execution of SAT solvers and learns a structured graph representing the causal relationships between the components of a SAT solver. Subsequently, given a query such as whether a clause with low literals blocks distance (LBD) has a higher clause utility, {CausalSAT} calculates the causal effect of LBD on clause utility and provides an answer to the question. We use {CausalSAT} to quantitatively verify hypotheses previously regarded as "rules of thumb" or empirical findings, such as the query above or the notion that clauses with high LBD experience a rapid drop in utility over time. Moreover, {CausalSAT} can address previously unexplored questions, like which branching heuristic leads to greater clause utility in order to study the relationship between branching and clause management. Experimental evaluations using practical benchmarks demonstrate that {CausalSAT} effectively fits the data, verifies four "rules of thumb", and provides answers to three questions closely related to implementing modern solvers.
Cite as

Jiong Yang, Arijit Shaw, Teodora Baluta, Mate Soos, and Kuldeep S. Meel. Explaining SAT Solving Using Causal Reasoning. In 26th International Conference on Theory and Applications of Satisfiability Testing (SAT 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 271, pp. 28:1-28:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

Copy BibTex To Clipboard

@InProceedings{yang_et_al:LIPIcs.SAT.2023.28,
  author =	{Yang, Jiong and Shaw, Arijit and Baluta, Teodora and Soos, Mate and Meel, Kuldeep S.},
  title =	{{Explaining SAT Solving Using Causal Reasoning}},
  booktitle =	{26th International Conference on Theory and Applications of Satisfiability Testing (SAT 2023)},
  pages =	{28:1--28:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-286-0},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{271},
  editor =	{Mahajan, Meena and Slivovsky, Friedrich},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops-dev.dagstuhl.de/entities/document/10.4230/LIPIcs.SAT.2023.28},
  URN =		{urn:nbn:de:0030-drops-184909},
  doi =		{10.4230/LIPIcs.SAT.2023.28},
  annote =	{Keywords: Satisfiability, Causality, SAT solver, Clause management}
}
Document
DOI: 10.4230/LIPIcs.ITP.2023.35
Formalising the Proj Construction in Lean

Authors: Jujian Zhang

Published in: LIPIcs, Volume 268, 14th International Conference on Interactive Theorem Proving (ITP 2023)

Abstract
Many objects of interest in mathematics can be studied both analytically and algebraically, while at the same time, it is known that analytic geometry and algebraic geometry generally do not behave the same. However, the famous GAGA theorem asserts that for projective varieties, analytic and algebraic geometries are closely related; the proof of Fermat’s last theorem, for example, uses this technique to transport between the two worlds [Serre, 1955]. A crucial step of proving GAGA is to calculate cohomology of projective space [Neeman, 2007; Godement, 1958], thus I formalise the Proj construction in the Lean theorem prover for any ℕ-graded R-algebra A and construct projective n-space as Proj A[X₀,… , X_n]. This is the first family of non-affine schemes formalised in any theorem prover.
Cite as

Jujian Zhang. Formalising the Proj Construction in Lean. In 14th International Conference on Interactive Theorem Proving (ITP 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 268, pp. 35:1-35:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

Copy BibTex To Clipboard

@InProceedings{zhang:LIPIcs.ITP.2023.35,
  author =	{Zhang, Jujian},
  title =	{{Formalising the Proj Construction in Lean}},
  booktitle =	{14th International Conference on Interactive Theorem Proving (ITP 2023)},
  pages =	{35:1--35:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-284-6},
  ISSN =	{1868-8969},
  year =	{2023},
  volume =	{268},
  editor =	{Naumowicz, Adam and Thiemann, Ren\'{e}},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops-dev.dagstuhl.de/entities/document/10.4230/LIPIcs.ITP.2023.35},
  URN =		{urn:nbn:de:0030-drops-184105},
  doi =		{10.4230/LIPIcs.ITP.2023.35},
  annote =	{Keywords: Lean, formalisation, algebraic geometry, scheme, Proj construction, projective geometry}
}
  • Refine by Author
  • 17 Tan, Li-Yang
  • 9 Servedio, Rocco A.
  • 5 Blanc, Guy
  • 5 Lange, Jane
  • 4 Galanis, Andreas
  • Show More...

  • Refine by Classification
  • 6 Theory of computation → Computational geometry
  • 5 Theory of computation → Computational complexity and cryptography
  • 5 Theory of computation → Pseudorandomness and derandomization
  • 4 Computer systems organization → Cloud computing
  • 4 Information systems → Geographic information systems
  • Show More...

  • Refine by Keyword
  • 4 Internet of Things
  • 3 Scheduling
  • 3 approximate counting
  • 3 approximation algorithms
  • 3 circuit complexity
  • Show More...

  • Refine by Type
  • 149 document
  • 1 volume

  • Refine by Publication Year
  • 25 2020
  • 18 2023
  • 17 2018
  • 16 2021
  • 16 2022
  • Show More...

Questions / Remarks / Feedback
X

Feedback for Dagstuhl Publishing


Thanks for your feedback!

Feedback submitted

Could not send message

Please try again later or send an E-mail
© 2023-2024 Schloss Dagstuhl – LZI GmbH Imprint Privacy Contact