Published in: Dagstuhl Manifestos, Volume 3, Issue 1 (2013)
Jonas S. Almeida, Andreas Dress, Titus Kühne, and Laxmi Parida. ICT for Bridging Biology and Medicine (Dagstuhl Perspectives Workshop 13342). In Dagstuhl Manifestos, Volume 3, Issue 1, pp. 31-50, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2014)
@Article{almeida_et_al:DagMan.3.1.31, author = {Almeida, Jonas S. and Dress, Andreas and K\"{u}hne, Titus and Parida, Laxmi}, title = {{ICT for Bridging Biology and Medicine (Dagstuhl Perspectives Workshop 13342)}}, pages = {31--50}, journal = {Dagstuhl Manifestos}, ISSN = {2193-2433}, year = {2014}, volume = {3}, number = {1}, editor = {Almeida, Jonas S. and Dress, Andreas and K\"{u}hne, Titus and Parida, Laxmi}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagMan.3.1.31}, URN = {urn:nbn:de:0030-drops-44292}, doi = {10.4230/DagMan.3.1.31}, annote = {Keywords: Systems medicine, health-care related information systems, biomedical workflow engines, medical cloud, patient participation, ICT literacy} }
Published in: Dagstuhl Reports, Volume 3, Issue 8 (2013)
Jonas Almeida, Andreas Dress, Titus Kühne, and Laxmi Parida. ICT Strategies for Bridging Biology and Precision Medicine (Dagstuhl Perspectives Workshop 13342). In Dagstuhl Reports, Volume 3, Issue 8, pp. 87-135, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2013)
@Article{almeida_et_al:DagRep.3.8.87, author = {Almeida, Jonas and Dress, Andreas and K\"{u}hne, Titus and Parida, Laxmi}, title = {{ICT Strategies for Bridging Biology and Precision Medicine (Dagstuhl Perspectives Workshop 13342)}}, pages = {87--135}, journal = {Dagstuhl Reports}, ISSN = {2192-5283}, year = {2013}, volume = {3}, number = {8}, editor = {Almeida, Jonas and Dress, Andreas and K\"{u}hne, Titus and Parida, Laxmi}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagRep.3.8.87}, URN = {urn:nbn:de:0030-drops-43447}, doi = {10.4230/DagRep.3.8.87}, annote = {Keywords: Systems biomedicine, precision medicine, healthcare-related information systems, biomedical workflow engines, medical cloud, patient participation, IC} }
Published in: Dagstuhl Reports, Volume 2, Issue 7 (2013)
Alberto Apostolico, Andreas Dress, and Laxmi Parida. Structure Discovery in Biology: Motifs, Networks & Phylogenies (Dagstuhl Seminar 12291). In Dagstuhl Reports, Volume 2, Issue 7, pp. 92-117, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2012)
@Article{apostolico_et_al:DagRep.2.7.92, author = {Apostolico, Alberto and Dress, Andreas and Parida, Laxmi}, title = {{Structure Discovery in Biology: Motifs, Networks \& Phylogenies (Dagstuhl Seminar 12291)}}, pages = {92--117}, journal = {Dagstuhl Reports}, ISSN = {2192-5283}, year = {2012}, volume = {2}, number = {7}, editor = {Apostolico, Alberto and Dress, Andreas and Parida, Laxmi}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagRep.2.7.92}, URN = {urn:nbn:de:0030-drops-37509}, doi = {10.4230/DagRep.2.7.92}, annote = {Keywords: mathematical biology, computational biology, algorithmic bioinformatics, pattern discovery, networks, phylogenetics, stringology} }
Published in: Dagstuhl Seminar Proceedings, Volume 10231, Structure Discovery in Biology: Motifs, Networks & Phylogenies (2010)
Matteo Comin and Davide Verzotto. Remote Homology Detection of Protein Sequences. In Structure Discovery in Biology: Motifs, Networks & Phylogenies. Dagstuhl Seminar Proceedings, Volume 10231, pp. 1-20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2010)
@InProceedings{comin_et_al:DagSemProc.10231.7, author = {Comin, Matteo and Verzotto, Davide}, title = {{Remote Homology Detection of Protein Sequences}}, booktitle = {Structure Discovery in Biology: Motifs, Networks \& Phylogenies}, pages = {1--20}, series = {Dagstuhl Seminar Proceedings (DagSemProc)}, ISSN = {1862-4405}, year = {2010}, volume = {10231}, editor = {Alberto Apostolico and Andreas Dress and Laxmi Parida}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.10231.7}, URN = {urn:nbn:de:0030-drops-27419}, doi = {10.4230/DagSemProc.10231.7}, annote = {Keywords: Classification of protein sequences, irredundant patterns} }
Published in: Dagstuhl Seminar Proceedings, Volume 10231, Structure Discovery in Biology: Motifs, Networks & Phylogenies (2010)
Alberto Apostolico, Andreas Dress, and Laxmi Parida. 10231 Abstracts Collection – Structure Discovery in Biology: Motifs, Networks & Phylogenies. In Structure Discovery in Biology: Motifs, Networks & Phylogenies. Dagstuhl Seminar Proceedings, Volume 10231, pp. 1-20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2010)
@InProceedings{apostolico_et_al:DagSemProc.10231.1, author = {Apostolico, Alberto and Dress, Andreas and Parida, Laxmi}, title = {{10231 Abstracts Collection – Structure Discovery in Biology: Motifs, Networks \& Phylogenies}}, booktitle = {Structure Discovery in Biology: Motifs, Networks \& Phylogenies}, pages = {1--20}, series = {Dagstuhl Seminar Proceedings (DagSemProc)}, ISSN = {1862-4405}, year = {2010}, volume = {10231}, editor = {Alberto Apostolico and Andreas Dress and Laxmi Parida}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.10231.1}, URN = {urn:nbn:de:0030-drops-26910}, doi = {10.4230/DagSemProc.10231.1}, annote = {Keywords: Mathematical biology, computational biology, algorithmic bioinformatics, pattern discovery, phylogenetics, networks} }
Published in: Dagstuhl Seminar Proceedings, Volume 10231, Structure Discovery in Biology: Motifs, Networks & Phylogenies (2010)
Anne Bergeron, Julia Mixtacki, and Jens Stoye. A New Linear Time Algorithm to Compute the Genomic Distance Via the Double Cut and Join Distance. In Structure Discovery in Biology: Motifs, Networks & Phylogenies. Dagstuhl Seminar Proceedings, Volume 10231, pp. 1-25, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2010)
@InProceedings{bergeron_et_al:DagSemProc.10231.2, author = {Bergeron, Anne and Mixtacki, Julia and Stoye, Jens}, title = {{A New Linear Time Algorithm to Compute the Genomic Distance Via the Double Cut and Join Distance}}, booktitle = {Structure Discovery in Biology: Motifs, Networks \& Phylogenies}, pages = {1--25}, series = {Dagstuhl Seminar Proceedings (DagSemProc)}, ISSN = {1862-4405}, year = {2010}, volume = {10231}, editor = {Alberto Apostolico and Andreas Dress and Laxmi Parida}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.10231.2}, URN = {urn:nbn:de:0030-drops-26892}, doi = {10.4230/DagSemProc.10231.2}, annote = {Keywords: Comparative genomics, genomic distance computation, HP theory} }
Published in: Dagstuhl Seminar Proceedings, Volume 10231, Structure Discovery in Biology: Motifs, Networks & Phylogenies (2010)
Matthias Gallé. A New Tree Distance Metric for Structural Comparison of Sequences. In Structure Discovery in Biology: Motifs, Networks & Phylogenies. Dagstuhl Seminar Proceedings, Volume 10231, pp. 1-9, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2010)
@InProceedings{galle:DagSemProc.10231.3, author = {Gall\'{e}, Matthias}, title = {{A New Tree Distance Metric for Structural Comparison of Sequences}}, booktitle = {Structure Discovery in Biology: Motifs, Networks \& Phylogenies}, pages = {1--9}, series = {Dagstuhl Seminar Proceedings (DagSemProc)}, ISSN = {1862-4405}, year = {2010}, volume = {10231}, editor = {Alberto Apostolico and Andreas Dress and Laxmi Parida}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.10231.3}, URN = {urn:nbn:de:0030-drops-27375}, doi = {10.4230/DagSemProc.10231.3}, annote = {Keywords: Tree distance, structure discovery, Parseval metric, Tanimoto distance} }
Published in: Dagstuhl Seminar Proceedings, Volume 10231, Structure Discovery in Biology: Motifs, Networks & Phylogenies (2010)
Cinzia Pizzi. Efficient computation of statistics for words with mismatches. In Structure Discovery in Biology: Motifs, Networks & Phylogenies. Dagstuhl Seminar Proceedings, Volume 10231, pp. 1-22, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2010)
@InProceedings{pizzi:DagSemProc.10231.4, author = {Pizzi, Cinzia}, title = {{Efficient computation of statistics for words with mismatches}}, booktitle = {Structure Discovery in Biology: Motifs, Networks \& Phylogenies}, pages = {1--22}, series = {Dagstuhl Seminar Proceedings (DagSemProc)}, ISSN = {1862-4405}, year = {2010}, volume = {10231}, editor = {Alberto Apostolico and Andreas Dress and Laxmi Parida}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.10231.4}, URN = {urn:nbn:de:0030-drops-27384}, doi = {10.4230/DagSemProc.10231.4}, annote = {Keywords: Statistics on words, mismatches, dynamic programming, biological sequences.} }
Published in: Dagstuhl Seminar Proceedings, Volume 10231, Structure Discovery in Biology: Motifs, Networks & Phylogenies (2010)
Raffaele Giancarlo, Davide Corona, Valeria Di Benedetto, Alessandra Gabriele, and Filippo Utro. Functional Information, Biomolecular Messages and Complexity of BioSequences and Structures. In Structure Discovery in Biology: Motifs, Networks & Phylogenies. Dagstuhl Seminar Proceedings, Volume 10231, pp. 1-13, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2010)
@InProceedings{giancarlo_et_al:DagSemProc.10231.6, author = {Giancarlo, Raffaele and Corona, Davide and Di Benedetto, Valeria and Gabriele, Alessandra and Utro, Filippo}, title = {{Functional Information, Biomolecular Messages and Complexity of BioSequences and Structures}}, booktitle = {Structure Discovery in Biology: Motifs, Networks \& Phylogenies}, pages = {1--13}, series = {Dagstuhl Seminar Proceedings (DagSemProc)}, ISSN = {1862-4405}, year = {2010}, volume = {10231}, editor = {Alberto Apostolico and Andreas Dress and Laxmi Parida}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.10231.6}, URN = {urn:nbn:de:0030-drops-26884}, doi = {10.4230/DagSemProc.10231.6}, annote = {Keywords: Functional activity, sequence complexity, combinatorics on words, protein-DNA interaction.} }
Published in: Dagstuhl Seminar Proceedings, Volume 10231, Structure Discovery in Biology: Motifs, Networks & Phylogenies (2010)
Andreas Dress, Wim Hordijk, Lin Wei, and Peter Serocka. The Ideal Storage Cellular Automaton Model. In Structure Discovery in Biology: Motifs, Networks & Phylogenies. Dagstuhl Seminar Proceedings, Volume 10231, pp. 1-8, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2010)
@InProceedings{dress_et_al:DagSemProc.10231.8, author = {Dress, Andreas and Hordijk, Wim and Wei, Lin and Serocka, Peter}, title = {{The Ideal Storage Cellular Automaton Model}}, booktitle = {Structure Discovery in Biology: Motifs, Networks \& Phylogenies}, pages = {1--8}, series = {Dagstuhl Seminar Proceedings (DagSemProc)}, ISSN = {1862-4405}, year = {2010}, volume = {10231}, editor = {Alberto Apostolico and Andreas Dress and Laxmi Parida}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.10231.8}, URN = {urn:nbn:de:0030-drops-27280}, doi = {10.4230/DagSemProc.10231.8}, annote = {Keywords: } }
Published in: Dagstuhl Seminar Proceedings, Volume 10231, Structure Discovery in Biology: Motifs, Networks & Phylogenies (2010)
Marius Nicolae, Serghei Mangul, Ion Mandoiu, and Alex Zelikovsky. Estimation of alternative splicing isoform frequencies from RNA-Seq data. In Structure Discovery in Biology: Motifs, Networks & Phylogenies. Dagstuhl Seminar Proceedings, Volume 10231, pp. 1-3, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2010)
@InProceedings{nicolae_et_al:DagSemProc.10231.5, author = {Nicolae, Marius and Mangul, Serghei and Mandoiu, Ion and Zelikovsky, Alex}, title = {{Estimation of alternative splicing isoform frequencies from RNA-Seq data}}, booktitle = {Structure Discovery in Biology: Motifs, Networks \& Phylogenies}, pages = {1--3}, series = {Dagstuhl Seminar Proceedings (DagSemProc)}, ISSN = {1862-4405}, year = {2010}, volume = {10231}, editor = {Alberto Apostolico and Andreas Dress and Laxmi Parida}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.10231.5}, URN = {urn:nbn:de:0030-drops-26876}, doi = {10.4230/DagSemProc.10231.5}, annote = {Keywords: RNA-Seq, alternative splicing isoforms, expectation maximization} }
Published in: Dagstuhl Seminar Reports. Dagstuhl Seminar Reports, Volume 1 (2021)
Andreas Dress, Marek Karpinski, and Michael Singer. Efficient Interpolation Algorithms (Dagstuhl Seminar 9149). Dagstuhl Seminar Report 26, pp. 1-15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (1992)
@TechReport{dress_et_al:DagSemRep.26, author = {Dress, Andreas and Karpinski, Marek and Singer, Michael}, title = {{Efficient Interpolation Algorithms (Dagstuhl Seminar 9149)}}, pages = {1--15}, ISSN = {1619-0203}, year = {1992}, type = {Dagstuhl Seminar Report}, number = {26}, institution = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemRep.26}, URN = {urn:nbn:de:0030-drops-149141}, doi = {10.4230/DagSemRep.26}, }
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