Published in: LIPIcs, Volume 88, 17th International Workshop on Algorithms in Bioinformatics (WABI 2017)
Petr Procházka and Jan Holub. Byte-Aligned Pattern Matching in Encoded Genomic Sequences. In 17th International Workshop on Algorithms in Bioinformatics (WABI 2017). Leibniz International Proceedings in Informatics (LIPIcs), Volume 88, pp. 20:1-20:13, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2017)
@InProceedings{prochazka_et_al:LIPIcs.WABI.2017.20, author = {Proch\'{a}zka, Petr and Holub, Jan}, title = {{Byte-Aligned Pattern Matching in Encoded Genomic Sequences}}, booktitle = {17th International Workshop on Algorithms in Bioinformatics (WABI 2017)}, pages = {20:1--20:13}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-050-7}, ISSN = {1868-8969}, year = {2017}, volume = {88}, editor = {Schwartz, Russell and Reinert, Knut}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2017.20}, URN = {urn:nbn:de:0030-drops-76538}, doi = {10.4230/LIPIcs.WABI.2017.20}, annote = {Keywords: genomic sequences, pattern matching, q-gram inverted index} }
Published in: OASIcs, Volume 16, Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science (MEMICS'10) -- Selected Papers (2011)
Jiri Matela, Vit Rusnak, and Petr Holub. GPU-Based Sample-Parallel Context Modeling for EBCOT in JPEG2000. In Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science (MEMICS'10) -- Selected Papers. Open Access Series in Informatics (OASIcs), Volume 16, pp. 77-84, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2011)
@InProceedings{matela_et_al:OASIcs.MEMICS.2010.77, author = {Matela, Jiri and Rusnak, Vit and Holub, Petr}, title = {{GPU-Based Sample-Parallel Context Modeling for EBCOT in JPEG2000}}, booktitle = {Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science (MEMICS'10) -- Selected Papers}, pages = {77--84}, series = {Open Access Series in Informatics (OASIcs)}, ISBN = {978-3-939897-22-4}, ISSN = {2190-6807}, year = {2011}, volume = {16}, editor = {Matyska, Ludek and Kozubek, Michal and Vojnar, Tomas and Zemcik, Pavel and Antos, David}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/OASIcs.MEMICS.2010.77}, URN = {urn:nbn:de:0030-drops-30681}, doi = {10.4230/OASIcs.MEMICS.2010.77}, annote = {Keywords: JPEG2000, EBCOT, Context Modeling, GPU, GPGPU, parallel} }
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