Published in: LIPIcs, Volume 322, 35th International Symposium on Algorithms and Computation (ISAAC 2024)
MIT Hardness Group, Josh Brunner, Erik D. Demaine, Jenny Diomidova, Timothy Gomez, Markus Hecher, Frederick Stock, and Zixiang Zhou. Easier Ways to Prove Counting Hard: A Dichotomy for Generalized #SAT, Applied to Constraint Graphs. In 35th International Symposium on Algorithms and Computation (ISAAC 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 322, pp. 51:1-51:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)
@InProceedings{mithardnessgroup_et_al:LIPIcs.ISAAC.2024.51, author = {MIT Hardness Group and Brunner, Josh and Demaine, Erik D. and Diomidova, Jenny and Gomez, Timothy and Hecher, Markus and Stock, Frederick and Zhou, Zixiang}, title = {{Easier Ways to Prove Counting Hard: A Dichotomy for Generalized #SAT, Applied to Constraint Graphs}}, booktitle = {35th International Symposium on Algorithms and Computation (ISAAC 2024)}, pages = {51:1--51:14}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-354-6}, ISSN = {1868-8969}, year = {2024}, volume = {322}, editor = {Mestre, Juli\'{a}n and Wirth, Anthony}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ISAAC.2024.51}, URN = {urn:nbn:de:0030-drops-221790}, doi = {10.4230/LIPIcs.ISAAC.2024.51}, annote = {Keywords: Counting, Computational Complexity, Sharp-P, Dichotomy, Constraint Graph Satisfiability} }
Published in: LIPIcs, Volume 314, 30th International Conference on DNA Computing and Molecular Programming (DNA 30) (2024)
Erik D. Demaine, Timothy Gomez, Elise Grizzell, Markus Hecher, Jayson Lynch, Robert Schweller, Ahmed Shalaby, and Damien Woods. Domain-Based Nucleic-Acid Minimum Free Energy: Algorithmic Hardness and Parameterized Bounds. In 30th International Conference on DNA Computing and Molecular Programming (DNA 30). Leibniz International Proceedings in Informatics (LIPIcs), Volume 314, pp. 2:1-2:24, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)
@InProceedings{demaine_et_al:LIPIcs.DNA.30.2, author = {Demaine, Erik D. and Gomez, Timothy and Grizzell, Elise and Hecher, Markus and Lynch, Jayson and Schweller, Robert and Shalaby, Ahmed and Woods, Damien}, title = {{Domain-Based Nucleic-Acid Minimum Free Energy: Algorithmic Hardness and Parameterized Bounds}}, booktitle = {30th International Conference on DNA Computing and Molecular Programming (DNA 30)}, pages = {2:1--2:24}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-344-7}, ISSN = {1868-8969}, year = {2024}, volume = {314}, editor = {Seki, Shinnosuke and Stewart, Jaimie Marie}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.30.2}, URN = {urn:nbn:de:0030-drops-209304}, doi = {10.4230/LIPIcs.DNA.30.2}, annote = {Keywords: Domain-based DNA designs, minimum free energy, efficient algorithms, NP-hard, P-hard, NC, fixed-parameter tractable} }
Published in: LIPIcs, Volume 276, 29th International Conference on DNA Computing and Molecular Programming (DNA 29) (2023)
Robert M. Alaniz, Josh Brunner, Michael Coulombe, Erik D. Demaine, Jenny Diomidova, Timothy Gomez, Elise Grizzell, Ryan Knobel, Jayson Lynch, Andrew Rodriguez, Robert Schweller, and Tim Wylie. Complexity of Reconfiguration in Surface Chemical Reaction Networks. In 29th International Conference on DNA Computing and Molecular Programming (DNA 29). Leibniz International Proceedings in Informatics (LIPIcs), Volume 276, pp. 10:1-10:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)
@InProceedings{alaniz_et_al:LIPIcs.DNA.29.10, author = {Alaniz, Robert M. and Brunner, Josh and Coulombe, Michael and Demaine, Erik D. and Diomidova, Jenny and Gomez, Timothy and Grizzell, Elise and Knobel, Ryan and Lynch, Jayson and Rodriguez, Andrew and Schweller, Robert and Wylie, Tim}, title = {{Complexity of Reconfiguration in Surface Chemical Reaction Networks}}, booktitle = {29th International Conference on DNA Computing and Molecular Programming (DNA 29)}, pages = {10:1--10:18}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-297-6}, ISSN = {1868-8969}, year = {2023}, volume = {276}, editor = {Chen, Ho-Lin and Evans, Constantine G.}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.29.10}, URN = {urn:nbn:de:0030-drops-187936}, doi = {10.4230/LIPIcs.DNA.29.10}, annote = {Keywords: Chemical Reaction Networks, reconfiguration, hardness} }
Published in: LIPIcs, Volume 257, 2nd Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2023)
Joshua Ani, Michael Coulombe, Erik D. Demaine, Yevhenii Diomidov, Timothy Gomez, Dylan Hendrickson, and Jayson Lynch. Complexity of Motion Planning of Arbitrarily Many Robots: Gadgets, Petri Nets, and Counter Machines. In 2nd Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 257, pp. 5:1-5:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)
@InProceedings{ani_et_al:LIPIcs.SAND.2023.5, author = {Ani, Joshua and Coulombe, Michael and Demaine, Erik D. and Diomidov, Yevhenii and Gomez, Timothy and Hendrickson, Dylan and Lynch, Jayson}, title = {{Complexity of Motion Planning of Arbitrarily Many Robots: Gadgets, Petri Nets, and Counter Machines}}, booktitle = {2nd Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2023)}, pages = {5:1--5:21}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-275-4}, ISSN = {1868-8969}, year = {2023}, volume = {257}, editor = {Doty, David and Spirakis, Paul}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SAND.2023.5}, URN = {urn:nbn:de:0030-drops-179414}, doi = {10.4230/LIPIcs.SAND.2023.5}, annote = {Keywords: Gadgets, robots, undecidability, Petri nets} }
Published in: LIPIcs, Volume 257, 2nd Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2023)
Robert M. Alaniz, David Caballero, Timothy Gomez, Elise Grizzell, Andrew Rodriguez, Robert Schweller, and Tim Wylie. Covert Computation in the Abstract Tile-Assembly Model. In 2nd Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 257, pp. 12:1-12:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)
@InProceedings{alaniz_et_al:LIPIcs.SAND.2023.12, author = {Alaniz, Robert M. and Caballero, David and Gomez, Timothy and Grizzell, Elise and Rodriguez, Andrew and Schweller, Robert and Wylie, Tim}, title = {{Covert Computation in the Abstract Tile-Assembly Model}}, booktitle = {2nd Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2023)}, pages = {12:1--12:17}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-275-4}, ISSN = {1868-8969}, year = {2023}, volume = {257}, editor = {Doty, David and Spirakis, Paul}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SAND.2023.12}, URN = {urn:nbn:de:0030-drops-179482}, doi = {10.4230/LIPIcs.SAND.2023.12}, annote = {Keywords: self-assembly, covert computation, atam} }
Published in: LIPIcs, Volume 229, 49th International Colloquium on Automata, Languages, and Programming (ICALP 2022)
David Caballero, Timothy Gomez, Robert Schweller, and Tim Wylie. Unique Assembly Verification in Two-Handed Self-Assembly. In 49th International Colloquium on Automata, Languages, and Programming (ICALP 2022). Leibniz International Proceedings in Informatics (LIPIcs), Volume 229, pp. 34:1-34:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2022)
@InProceedings{caballero_et_al:LIPIcs.ICALP.2022.34, author = {Caballero, David and Gomez, Timothy and Schweller, Robert and Wylie, Tim}, title = {{Unique Assembly Verification in Two-Handed Self-Assembly}}, booktitle = {49th International Colloquium on Automata, Languages, and Programming (ICALP 2022)}, pages = {34:1--34:21}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-235-8}, ISSN = {1868-8969}, year = {2022}, volume = {229}, editor = {Boja\'{n}czyk, Miko{\l}aj and Merelli, Emanuela and Woodruff, David P.}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2022.34}, URN = {urn:nbn:de:0030-drops-163751}, doi = {10.4230/LIPIcs.ICALP.2022.34}, annote = {Keywords: self-assembly, unique assembly verification, 2-handed assembly model} }
Published in: LIPIcs, Volume 221, 1st Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2022)
Robert M. Alaniz, David Caballero, Sonya C. Cirlos, Timothy Gomez, Elise Grizzell, Andrew Rodriguez, Robert Schweller, Armando Tenorio, and Tim Wylie. Building Squares with Optimal State Complexity in Restricted Active Self-Assembly. In 1st Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2022). Leibniz International Proceedings in Informatics (LIPIcs), Volume 221, pp. 6:1-6:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2022)
@InProceedings{alaniz_et_al:LIPIcs.SAND.2022.6, author = {Alaniz, Robert M. and Caballero, David and Cirlos, Sonya C. and Gomez, Timothy and Grizzell, Elise and Rodriguez, Andrew and Schweller, Robert and Tenorio, Armando and Wylie, Tim}, title = {{Building Squares with Optimal State Complexity in Restricted Active Self-Assembly}}, booktitle = {1st Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2022)}, pages = {6:1--6:18}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-224-2}, ISSN = {1868-8969}, year = {2022}, volume = {221}, editor = {Aspnes, James and Michail, Othon}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SAND.2022.6}, URN = {urn:nbn:de:0030-drops-159482}, doi = {10.4230/LIPIcs.SAND.2022.6}, annote = {Keywords: Active Self-Assembly, State Complexity, Tile Automata} }
Published in: LIPIcs, Volume 221, 1st Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2022)
David Caballero, Timothy Gomez, Robert Schweller, and Tim Wylie. Complexity of Verification in Self-Assembly with Prebuilt Assemblies. In 1st Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2022). Leibniz International Proceedings in Informatics (LIPIcs), Volume 221, pp. 8:1-8:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2022)
@InProceedings{caballero_et_al:LIPIcs.SAND.2022.8, author = {Caballero, David and Gomez, Timothy and Schweller, Robert and Wylie, Tim}, title = {{Complexity of Verification in Self-Assembly with Prebuilt Assemblies}}, booktitle = {1st Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2022)}, pages = {8:1--8:15}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-224-2}, ISSN = {1868-8969}, year = {2022}, volume = {221}, editor = {Aspnes, James and Michail, Othon}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SAND.2022.8}, URN = {urn:nbn:de:0030-drops-159503}, doi = {10.4230/LIPIcs.SAND.2022.8}, annote = {Keywords: 2-handed assembly, verification, prebuilt} }
Published in: LIPIcs, Volume 204, 29th Annual European Symposium on Algorithms (ESA 2021)
David Caballero, Timothy Gomez, Robert Schweller, and Tim Wylie. Covert Computation in Staged Self-Assembly: Verification Is PSPACE-Complete. In 29th Annual European Symposium on Algorithms (ESA 2021). Leibniz International Proceedings in Informatics (LIPIcs), Volume 204, pp. 23:1-23:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2021)
@InProceedings{caballero_et_al:LIPIcs.ESA.2021.23, author = {Caballero, David and Gomez, Timothy and Schweller, Robert and Wylie, Tim}, title = {{Covert Computation in Staged Self-Assembly: Verification Is PSPACE-Complete}}, booktitle = {29th Annual European Symposium on Algorithms (ESA 2021)}, pages = {23:1--23:18}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-204-4}, ISSN = {1868-8969}, year = {2021}, volume = {204}, editor = {Mutzel, Petra and Pagh, Rasmus and Herman, Grzegorz}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2021.23}, URN = {urn:nbn:de:0030-drops-146047}, doi = {10.4230/LIPIcs.ESA.2021.23}, annote = {Keywords: self-assembly, covert computation, staged self-assembly, assembly verification} }
Published in: LIPIcs, Volume 174, 26th International Conference on DNA Computing and Molecular Programming (DNA 26) (2020)
David Caballero, Timothy Gomez, Robert Schweller, and Tim Wylie. Verification and Computation in Restricted Tile Automata. In 26th International Conference on DNA Computing and Molecular Programming (DNA 26). Leibniz International Proceedings in Informatics (LIPIcs), Volume 174, pp. 10:1-10:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2020)
@InProceedings{caballero_et_al:LIPIcs.DNA.2020.10, author = {Caballero, David and Gomez, Timothy and Schweller, Robert and Wylie, Tim}, title = {{Verification and Computation in Restricted Tile Automata}}, booktitle = {26th International Conference on DNA Computing and Molecular Programming (DNA 26)}, pages = {10:1--10:18}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-163-4}, ISSN = {1868-8969}, year = {2020}, volume = {174}, editor = {Geary, Cody and Patitz, Matthew J.}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.2020.10}, URN = {urn:nbn:de:0030-drops-129635}, doi = {10.4230/LIPIcs.DNA.2020.10}, annote = {Keywords: Tile Automata, Turing Machines, Unique Assembly Verification} }
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