Document

APPROX

**Published in:** LIPIcs, Volume 317, Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2024)

We propose a novel clustering model encompassing two well-known clustering models: k-center clustering and k-median clustering. In the Hybrid k-Clustering problem, given a set P of points in ℝ^d, an integer k, and a non-negative real r, our objective is to position k closed balls of radius r to minimize the sum of distances from points not covered by the balls to their closest balls. Equivalently, we seek an optimal L₁-fitting of a union of k balls of radius r to a set of points in the Euclidean space. When r = 0, this corresponds to k-median; when the minimum sum is zero, indicating complete coverage of all points, it is k-center.
Our primary result is a bicriteria approximation algorithm that, for a given ε > 0, produces a hybrid k-clustering with balls of radius (1+ε)r. This algorithm achieves a cost at most 1+ε of the optimum, and it operates in time 2^{(kd/ε)^𝒪(1)} ⋅ n^𝒪(1). Notably, considering the established lower bounds on k-center and k-median, our bicriteria approximation stands as the best possible result for Hybrid k-Clustering.

Fedor V. Fomin, Petr A. Golovach, Tanmay Inamdar, Saket Saurabh, and Meirav Zehavi. Hybrid k-Clustering: Blending k-Median and k-Center. In Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 317, pp. 4:1-4:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

Copy BibTex To Clipboard

@InProceedings{fomin_et_al:LIPIcs.APPROX/RANDOM.2024.4, author = {Fomin, Fedor V. and Golovach, Petr A. and Inamdar, Tanmay and Saurabh, Saket and Zehavi, Meirav}, title = {{Hybrid k-Clustering: Blending k-Median and k-Center}}, booktitle = {Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2024)}, pages = {4:1--4:19}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-348-5}, ISSN = {1868-8969}, year = {2024}, volume = {317}, editor = {Kumar, Amit and Ron-Zewi, Noga}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.APPROX/RANDOM.2024.4}, URN = {urn:nbn:de:0030-drops-209975}, doi = {10.4230/LIPIcs.APPROX/RANDOM.2024.4}, annote = {Keywords: clustering, k-center, k-median, Euclidean space, fpt approximation} }

Document

APPROX

**Published in:** LIPIcs, Volume 317, Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2024)

In a disk graph, every vertex corresponds to a disk in ℝ² and two vertices are connected by an edge whenever the two corresponding disks intersect. Disk graphs form an important class of geometric intersection graphs, which generalizes both planar graphs and unit-disk graphs. We study a fundamental optimization problem in algorithmic graph theory, Bipartization (also known as Odd Cycle Transversal), on the class of disk graphs. The goal of Bipartization is to delete a minimum number of vertices from the input graph such that the resulting graph is bipartite. A folklore (polynomial-time) 3-approximation algorithm for Bipartization on disk graphs follows from the classical framework of Goemans and Williamson [Combinatorica'98] for cycle-hitting problems. For over two decades, this result has remained the best known approximation for the problem (in fact, even for Bipartization on unit-disk graphs). In this paper, we achieve the first improvement upon this result, by giving a (3-α)-approximation algorithm for Bipartization on disk graphs, for some constant α > 0. Our algorithm directly generalizes to the broader class of pseudo-disk graphs. Furthermore, our algorithm is robust in the sense that it does not require a geometric realization of the input graph to be given.

Daniel Lokshtanov, Fahad Panolan, Saket Saurabh, Jie Xue, and Meirav Zehavi. Bipartizing (Pseudo-)Disk Graphs: Approximation with a Ratio Better than 3. In Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 317, pp. 6:1-6:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

Copy BibTex To Clipboard

@InProceedings{lokshtanov_et_al:LIPIcs.APPROX/RANDOM.2024.6, author = {Lokshtanov, Daniel and Panolan, Fahad and Saurabh, Saket and Xue, Jie and Zehavi, Meirav}, title = {{Bipartizing (Pseudo-)Disk Graphs: Approximation with a Ratio Better than 3}}, booktitle = {Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2024)}, pages = {6:1--6:14}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-348-5}, ISSN = {1868-8969}, year = {2024}, volume = {317}, editor = {Kumar, Amit and Ron-Zewi, Noga}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.APPROX/RANDOM.2024.6}, URN = {urn:nbn:de:0030-drops-209990}, doi = {10.4230/LIPIcs.APPROX/RANDOM.2024.6}, annote = {Keywords: bipartization, geometric intersection graphs, approximation algorithms} }

Document

**Published in:** LIPIcs, Volume 293, 40th International Symposium on Computational Geometry (SoCG 2024)

Vertex Cover is a fundamental optimization problem, and is among Karp’s 21 NP-complete problems. The problem aims to compute, for a given graph G, a minimum-size set S of vertices of G such that G - S contains no edge. Vertex Cover admits a simple polynomial-time 2-approximation algorithm, which is the best approximation ratio one can achieve in polynomial time, assuming the Unique Game Conjecture. However, on many restrictive graph classes, it is possible to obtain better-than-2 approximation in polynomial time (or even PTASes) for Vertex Cover. In the club of geometric intersection graphs, examples of such graph classes include unit-disk graphs, disk graphs, pseudo-disk graphs, rectangle graphs, etc.
In this paper, we study Vertex Cover on the broadest class of geometric intersection graphs in the plane, known as string graphs, which are intersection graphs of any connected geometric objects in the plane. Our main result is a polynomial-time 1.9999-approximation algorithm for Vertex Cover on string graphs, breaking the natural 2 barrier. Prior to this work, no better-than-2 approximation (in polynomial time) was known even for special cases of string graphs, such as intersection graphs of segments.
Our algorithm is simple, robust (in the sense that it does not require the geometric realization of the input string graph to be given), and also works for the weighted version of Vertex Cover. Due to a connection between approximation for Independent Set and approximation for Vertex Cover observed by Har-Peled, our result can be viewed as a first step towards obtaining constant-approximation algorithms for Independent Set on string graphs.

Daniel Lokshtanov, Fahad Panolan, Saket Saurabh, Jie Xue, and Meirav Zehavi. A 1.9999-Approximation Algorithm for Vertex Cover on String Graphs. In 40th International Symposium on Computational Geometry (SoCG 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 293, pp. 72:1-72:11, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

Copy BibTex To Clipboard

@InProceedings{lokshtanov_et_al:LIPIcs.SoCG.2024.72, author = {Lokshtanov, Daniel and Panolan, Fahad and Saurabh, Saket and Xue, Jie and Zehavi, Meirav}, title = {{A 1.9999-Approximation Algorithm for Vertex Cover on String Graphs}}, booktitle = {40th International Symposium on Computational Geometry (SoCG 2024)}, pages = {72:1--72:11}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-316-4}, ISSN = {1868-8969}, year = {2024}, volume = {293}, editor = {Mulzer, Wolfgang and Phillips, Jeff M.}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2024.72}, URN = {urn:nbn:de:0030-drops-200174}, doi = {10.4230/LIPIcs.SoCG.2024.72}, annote = {Keywords: vertex cover, geometric intersection graphs, approximation algorithms} }

Document

**Published in:** Dagstuhl Reports, Volume 13, Issue 7 (2024)

Parameterization and approximation are two established approaches of coping with intractability in combinatorial optimization. In this Dagstuhl Seminar, we studied parameterized approximation as a relatively new algorithmic paradigm that combines these two popular research areas. In particular, we analyzed the solution quality (approximation ratio) as well as the running time of an algorithm in terms of a parameter that captures the "complexity" of a problem instance.
While the field has grown and yielded some promising results, our understanding of the area is rather ad-hoc compared to our knowledge in approximation or parameterized algorithms alone. In this seminar, we brought together researchers from both communities in order to bridge this gap by accommodating the exchange and unification of scientific knowledge.

Karthik C. S., Parinya Chalermsook, Joachim Spoerhase, Meirav Zehavi, and Martin Herold. Parameterized Approximation: Algorithms and Hardness (Dagstuhl Seminar 23291). In Dagstuhl Reports, Volume 13, Issue 7, pp. 96-107, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

Copy BibTex To Clipboard

@Article{c.s._et_al:DagRep.13.7.96, author = {C. S., Karthik and Chalermsook, Parinya and Spoerhase, Joachim and Zehavi, Meirav and Herold, Martin}, title = {{Parameterized Approximation: Algorithms and Hardness (Dagstuhl Seminar 23291)}}, pages = {96--107}, journal = {Dagstuhl Reports}, ISSN = {2192-5283}, year = {2024}, volume = {13}, number = {7}, editor = {C. S., Karthik and Chalermsook, Parinya and Spoerhase, Joachim and Zehavi, Meirav and Herold, Martin}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/DagRep.13.7.96}, URN = {urn:nbn:de:0030-drops-197764}, doi = {10.4230/DagRep.13.7.96}, annote = {Keywords: approximation algorithms, Hardness of approximation, Parameterized algorithms} }

Document

**Published in:** LIPIcs, Volume 287, 15th Innovations in Theoretical Computer Science Conference (ITCS 2024)

We introduce a new framework for the analysis of preprocessing routines for parameterized counting problems. Existing frameworks that encapsulate parameterized counting problems permit the usage of exponential (rather than polynomial) time either explicitly or by implicitly reducing the counting problems to enumeration problems. Thus, our framework is the only one in the spirit of classic kernelization (as well as lossy kernelization). Specifically, we define a compression of a counting problem P into a counting problem Q as a pair of polynomial-time procedures: reduce and lift. Given an instance of P, reduce outputs an instance of Q whose size is bounded by a function f of the parameter, and given the number of solutions to the instance of Q, lift outputs the number of solutions to the instance of P. When P = Q, compression is termed kernelization, and when f is polynomial, compression is termed polynomial compression. Our technical (and other conceptual) contributions can be classified into two categories:
Upper Bounds. We prove two theorems: (i) The #Vertex Cover problem parameterized by solution size admits a polynomial kernel; (ii) Every problem in the class of #Planar F-Deletion problems parameterized by solution size admits a polynomial compression.
Lower Bounds. We introduce two new concepts of cross-compositions: EXACT-cross-composition and SUM-cross-composition. We prove that if a #P-hard counting problem P EXACT-cross-composes into a parameterized counting problem Q, then Q does not admit a polynomial compression unless the polynomial hierarchy collapses. We conjecture that the same statement holds for SUM-cross-compositions. Then, we prove that: (i) #Min (s,t)-Cut parameterized by treewidth does not admit a polynomial compression unless the polynomial hierarchy collapses; (ii) #Min (s,t)-Cut parameterized by minimum cut size, #Odd Cycle Transversal parameterized by solution size, and #Vertex Cover parameterized by solution size minus maximum matching size, do not admit polynomial compressions unless our conjecture is false.

Daniel Lokshtanov, Pranabendu Misra, Saket Saurabh, and Meirav Zehavi. Kernelization of Counting Problems. In 15th Innovations in Theoretical Computer Science Conference (ITCS 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 287, pp. 77:1-77:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

Copy BibTex To Clipboard

@InProceedings{lokshtanov_et_al:LIPIcs.ITCS.2024.77, author = {Lokshtanov, Daniel and Misra, Pranabendu and Saurabh, Saket and Zehavi, Meirav}, title = {{Kernelization of Counting Problems}}, booktitle = {15th Innovations in Theoretical Computer Science Conference (ITCS 2024)}, pages = {77:1--77:23}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-309-6}, ISSN = {1868-8969}, year = {2024}, volume = {287}, editor = {Guruswami, Venkatesan}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITCS.2024.77}, URN = {urn:nbn:de:0030-drops-196059}, doi = {10.4230/LIPIcs.ITCS.2024.77}, annote = {Keywords: Kernelization, Counting Problems} }

Document

**Published in:** LIPIcs, Volume 285, 18th International Symposium on Parameterized and Exact Computation (IPEC 2023)

Given an undirected graph G and a multiset of k terminal pairs 𝒳, the Vertex-Disjoint Paths (VDP) and Edge-Disjoint Paths (EDP) problems ask whether G has k pairwise internally vertex-disjoint paths and k pairwise edge-disjoint paths, respectively, connecting every terminal pair in 𝒳. In this paper, we study the kernelization complexity of VDP and EDP on subclasses of chordal graphs. For VDP, we design a 4k vertex kernel on split graphs and an 𝒪(k²) vertex kernel on well-partitioned chordal graphs. We also show that the problem becomes polynomial-time solvable on threshold graphs. For EDP, we first prove that the problem is NP-complete on complete graphs. Then, we design an 𝒪(k^{2.75}) vertex kernel for EDP on split graphs, and improve it to a 7k+1 vertex kernel on threshold graphs. Lastly, we provide an 𝒪(k²) vertex kernel for EDP on block graphs and a 2k+1 vertex kernel for clique paths. Our contributions improve upon several results in the literature, as well as resolve an open question by Heggernes et al. [Theory Comput. Syst., 2015].

Juhi Chaudhary, Harmender Gahlawat, Michal Włodarczyk, and Meirav Zehavi. Kernels for the Disjoint Paths Problem on Subclasses of Chordal Graphs. In 18th International Symposium on Parameterized and Exact Computation (IPEC 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 285, pp. 10:1-10:22, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

Copy BibTex To Clipboard

@InProceedings{chaudhary_et_al:LIPIcs.IPEC.2023.10, author = {Chaudhary, Juhi and Gahlawat, Harmender and W{\l}odarczyk, Michal and Zehavi, Meirav}, title = {{Kernels for the Disjoint Paths Problem on Subclasses of Chordal Graphs}}, booktitle = {18th International Symposium on Parameterized and Exact Computation (IPEC 2023)}, pages = {10:1--10:22}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-305-8}, ISSN = {1868-8969}, year = {2023}, volume = {285}, editor = {Misra, Neeldhara and Wahlstr\"{o}m, Magnus}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.IPEC.2023.10}, URN = {urn:nbn:de:0030-drops-194296}, doi = {10.4230/LIPIcs.IPEC.2023.10}, annote = {Keywords: Kernelization, Parameterized Complexity, Vertex-Disjoint Paths Problem, Edge-Disjoint Paths Problem} }

Document

**Published in:** LIPIcs, Volume 285, 18th International Symposium on Parameterized and Exact Computation (IPEC 2023)

We initiate the study of the parameterized complexity of the Collective Graph Exploration (CGE) problem. In CGE, the input consists of an undirected connected graph G and a collection of k robots, initially placed at the same vertex r of G, and each one of them has an energy budget of B. The objective is to decide whether G can be explored by the k robots in B time steps, i.e., there exist k closed walks in G, one corresponding to each robot, such that every edge is covered by at least one walk, every walk starts and ends at the vertex r, and the maximum length of any walk is at most B. Unfortunately, this problem is NP-hard even on trees [Fraigniaud et al., 2006]. Further, we prove that the problem remains W[1]-hard parameterized by k even for trees of treedepth 3. Due to the para-NP-hardness of the problem parameterized by treedepth, and motivated by real-world scenarios, we study the parameterized complexity of the problem parameterized by the vertex cover number (vc) of the graph, and prove that the problem is fixed-parameter tractable (FPT) parameterized by vc. Additionally, we study the optimization version of CGE, where we want to optimize B, and design an approximation algorithm with an additive approximation factor of O(vc).

Siddharth Gupta, Guy Sa'ar, and Meirav Zehavi. Collective Graph Exploration Parameterized by Vertex Cover. In 18th International Symposium on Parameterized and Exact Computation (IPEC 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 285, pp. 22:1-22:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

Copy BibTex To Clipboard

@InProceedings{gupta_et_al:LIPIcs.IPEC.2023.22, author = {Gupta, Siddharth and Sa'ar, Guy and Zehavi, Meirav}, title = {{Collective Graph Exploration Parameterized by Vertex Cover}}, booktitle = {18th International Symposium on Parameterized and Exact Computation (IPEC 2023)}, pages = {22:1--22:18}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-305-8}, ISSN = {1868-8969}, year = {2023}, volume = {285}, editor = {Misra, Neeldhara and Wahlstr\"{o}m, Magnus}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.IPEC.2023.22}, URN = {urn:nbn:de:0030-drops-194413}, doi = {10.4230/LIPIcs.IPEC.2023.22}, annote = {Keywords: Collective Graph Exploration, Parameterized Complexity, Approximation Algorithm, Vertex Cover, Treedepth} }

Document

**Published in:** LIPIcs, Volume 285, 18th International Symposium on Parameterized and Exact Computation (IPEC 2023)

Over the past decade, we witness an increasing amount of interest in the design of exact exponential-time and parameterized algorithms for problems in Graph Drawing. Unfortunately, we still lack knowledge of general methods to develop such algorithms. An even more serious issue is that, here, "standard" parameters very often yield intractability. In particular, for the most common structural parameter, namely, treewidth, we frequently observe NP-hardness already when the input graphs are restricted to have constant (often, being just 1 or 2) treewidth.
Our work deals with both drawbacks simultaneously. We introduce a novel form of tree decomposition that, roughly speaking, does not decompose (only) a graph, but an entire drawing. As such, its bags and separators are of geometric (rather than only combinatorial) nature. While the corresponding parameter - like treewidth - can be arbitrarily smaller than the height (and width) of the drawing, we show that - unlike treewidth - it gives rise to efficient algorithms. Specifically, we get slice-wise polynomial (XP) time algorithms parameterized by our parameter. We present a general scheme for the design of such algorithms, and apply it to several central problems in Graph Drawing, including the recognition of grid graphs, minimization of crossings and bends, and compaction. Other than for the class of problems we discussed in the paper, we believe that our decomposition and scheme are of independent interest and can be further extended or generalized to suit even a wider class of problems. Additionally, we discuss classes of drawings where our parameter is bounded by 𝒪(√n) (where n is the number of vertices of the graph), yielding subexponential-time algorithms. Lastly, we prove which relations exist between drawn treewidth and other width measures, including treewidth, pathwidth, (dual) carving-width and embedded-width.

Siddharth Gupta, Guy Sa'ar, and Meirav Zehavi. Drawn Tree Decomposition: New Approach for Graph Drawing Problems. In 18th International Symposium on Parameterized and Exact Computation (IPEC 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 285, pp. 23:1-23:22, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

Copy BibTex To Clipboard

@InProceedings{gupta_et_al:LIPIcs.IPEC.2023.23, author = {Gupta, Siddharth and Sa'ar, Guy and Zehavi, Meirav}, title = {{Drawn Tree Decomposition: New Approach for Graph Drawing Problems}}, booktitle = {18th International Symposium on Parameterized and Exact Computation (IPEC 2023)}, pages = {23:1--23:22}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-305-8}, ISSN = {1868-8969}, year = {2023}, volume = {285}, editor = {Misra, Neeldhara and Wahlstr\"{o}m, Magnus}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.IPEC.2023.23}, URN = {urn:nbn:de:0030-drops-194424}, doi = {10.4230/LIPIcs.IPEC.2023.23}, annote = {Keywords: Graph Drawing, Parameterized Complexity, Tree decomposition} }

Document

**Published in:** LIPIcs, Volume 285, 18th International Symposium on Parameterized and Exact Computation (IPEC 2023)

We study the classic Dominating Set problem with respect to several prominent parameters. Specifically, we present algorithmic results that sidestep time complexity barriers by the incorporation of either approximation or larger parameterization. Our results span several parameterization regimes, including: (i,ii,iii) time/ratio-tradeoff for the parameters treewidth, vertex modulator to constant treewidth and solution size; (iv,v) FPT-algorithms for the parameters vertex cover number and feedback edge set number; and (vi) compression for the parameter feedback edge set number.

Ioannis Koutis, Michał Włodarczyk, and Meirav Zehavi. Sidestepping Barriers for Dominating Set in Parameterized Complexity. In 18th International Symposium on Parameterized and Exact Computation (IPEC 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 285, pp. 31:1-31:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

Copy BibTex To Clipboard

@InProceedings{koutis_et_al:LIPIcs.IPEC.2023.31, author = {Koutis, Ioannis and W{\l}odarczyk, Micha{\l} and Zehavi, Meirav}, title = {{Sidestepping Barriers for Dominating Set in Parameterized Complexity}}, booktitle = {18th International Symposium on Parameterized and Exact Computation (IPEC 2023)}, pages = {31:1--31:17}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-305-8}, ISSN = {1868-8969}, year = {2023}, volume = {285}, editor = {Misra, Neeldhara and Wahlstr\"{o}m, Magnus}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.IPEC.2023.31}, URN = {urn:nbn:de:0030-drops-194506}, doi = {10.4230/LIPIcs.IPEC.2023.31}, annote = {Keywords: Dominating Set, Parameterized Complexity, Approximation Algorithms} }

Document

**Published in:** LIPIcs, Volume 284, 43rd IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2023)

Fair division of resources among competing agents is a fundamental problem in computational social choice and economic game theory. It has been intensively studied on various kinds of items (divisible and indivisible) and under various notions of fairness. We focus on Connected Fair Division (CFD), the variant of fair division on graphs, where the resources are modeled as an item graph. Here, each agent has to be assigned a connected subgraph of the item graph, and each item has to be assigned to some agent.
We introduce a generalization of CFD, termed Incomplete CFD (ICFD), where exactly p vertices of the item graph should be assigned to the agents. This might be useful, in particular when the allocations are intended to be "economical" as well as fair. We consider four well-known notions of fairness: PROP, EF, EF1, EFX. First, we prove that EF-ICFD, EF1-ICFD, and EFX-ICFD are W[1]-hard parameterized by p plus the number of agents, even for graphs having constant vertex cover number (vcn). In contrast, we present a randomized FPT algorithm for PROP-ICFD parameterized only by p. Additionally, we prove both positive and negative results concerning the kernelization complexity of ICFD under all four fairness notions, parameterized by p, vcn, and the total number of different valuations in the item graph (val).

Harmender Gahlawat and Meirav Zehavi. Parameterized Complexity of Incomplete Connected Fair Division. In 43rd IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 284, pp. 14:1-14:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

Copy BibTex To Clipboard

@InProceedings{gahlawat_et_al:LIPIcs.FSTTCS.2023.14, author = {Gahlawat, Harmender and Zehavi, Meirav}, title = {{Parameterized Complexity of Incomplete Connected Fair Division}}, booktitle = {43rd IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2023)}, pages = {14:1--14:18}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-304-1}, ISSN = {1868-8969}, year = {2023}, volume = {284}, editor = {Bouyer, Patricia and Srinivasan, Srikanth}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.FSTTCS.2023.14}, URN = {urn:nbn:de:0030-drops-193877}, doi = {10.4230/LIPIcs.FSTTCS.2023.14}, annote = {Keywords: Fair Division, Kernelization, Connected Fair Allocation, Fixed parameter tractability} }

Document

**Published in:** Dagstuhl Reports, Volume 13, Issue 4 (2023)

This report documents the program and the outcomes of Dagstuhl Seminar 23162 "New Frontiers of Parameterized Complexity in Graph Drawing”. The seminar was held in-person from April 16 to April 21, 2023. It brought together 32 researchers from the Graph Drawing and the Parameterized Complexity research communities to discuss and explore new research frontiers on the interface between the two fields. The report collects the abstracts of talks and open problems presented in the seminar, as well as brief progress reports from the working groups.

Robert Ganian, Fabrizio Montecchiani, Martin Nöllenburg, Meirav Zehavi, and Liana Khazaliya. New Frontiers of Parameterized Complexity in Graph Drawing (Dagstuhl Seminar 23162). In Dagstuhl Reports, Volume 13, Issue 4, pp. 58-97, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

Copy BibTex To Clipboard

@Article{ganian_et_al:DagRep.13.4.58, author = {Ganian, Robert and Montecchiani, Fabrizio and N\"{o}llenburg, Martin and Zehavi, Meirav and Khazaliya, Liana}, title = {{New Frontiers of Parameterized Complexity in Graph Drawing (Dagstuhl Seminar 23162)}}, pages = {58--97}, journal = {Dagstuhl Reports}, ISSN = {2192-5283}, year = {2023}, volume = {13}, number = {4}, editor = {Ganian, Robert and Montecchiani, Fabrizio and N\"{o}llenburg, Martin and Zehavi, Meirav and Khazaliya, Liana}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/DagRep.13.4.58}, URN = {urn:nbn:de:0030-drops-192393}, doi = {10.4230/DagRep.13.4.58}, annote = {Keywords: algorithm design, computational geometry, graph drawing, parameterized complexity} }

Document

**Published in:** LIPIcs, Volume 274, 31st Annual European Symposium on Algorithms (ESA 2023)

We consider the following problem about dispersing points. Given a set of points in the plane, the task is to identify whether by moving a small number of points by small distance, we can obtain an arrangement of points such that no pair of points is "close" to each other. More precisely, for a family of n points, an integer k, and a real number d > 0, we ask whether at most k points could be relocated, each point at distance at most d from its original location, such that the distance between each pair of points is at least a fixed constant, say 1. A number of approximation algorithms for variants of this problem, under different names like distant representatives, disk dispersing, or point spreading, are known in the literature. However, to the best of our knowledge, the parameterized complexity of this problem remains widely unexplored. We make the first step in this direction by providing a kernelization algorithm that, in polynomial time, produces an equivalent instance with 𝒪(d²k³) points. As a byproduct of this result, we also design a non-trivial fixed-parameter tractable (FPT) algorithm for the problem, parameterized by k and d. Finally, we complement the result about polynomial kernelization by showing a lower bound that rules out the existence of a kernel whose size is polynomial in k alone, unless NP ⊆ coNP/poly.

Fedor V. Fomin, Petr A. Golovach, Tanmay Inamdar, Saket Saurabh, and Meirav Zehavi. Kernelization for Spreading Points. In 31st Annual European Symposium on Algorithms (ESA 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 274, pp. 48:1-48:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

Copy BibTex To Clipboard

@InProceedings{fomin_et_al:LIPIcs.ESA.2023.48, author = {Fomin, Fedor V. and Golovach, Petr A. and Inamdar, Tanmay and Saurabh, Saket and Zehavi, Meirav}, title = {{Kernelization for Spreading Points}}, booktitle = {31st Annual European Symposium on Algorithms (ESA 2023)}, pages = {48:1--48:16}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-295-2}, ISSN = {1868-8969}, year = {2023}, volume = {274}, editor = {G{\o}rtz, Inge Li and Farach-Colton, Martin and Puglisi, Simon J. and Herman, Grzegorz}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2023.48}, URN = {urn:nbn:de:0030-drops-187017}, doi = {10.4230/LIPIcs.ESA.2023.48}, annote = {Keywords: parameterized algorithms, kernelization, spreading points, distant representatives, unit disk packing} }

Document

**Published in:** LIPIcs, Volume 274, 31st Annual European Symposium on Algorithms (ESA 2023)

We re-visit the complexity of polynomial time pre-processing (kernelization) for the d-Hitting Set problem. This is one of the most classic problems in Parameterized Complexity by itself, and, furthermore, it encompasses several other of the most well-studied problems in this field, such as Vertex Cover, Feedback Vertex Set in Tournaments (FVST) and Cluster Vertex Deletion (CVD). In fact, d-Hitting Set encompasses any deletion problem to a hereditary property that can be characterized by a finite set of forbidden induced subgraphs. With respect to bit size, the kernelization complexity of d-Hitting Set is essentially settled: there exists a kernel with 𝒪(k^d) bits (𝒪(k^d) sets and 𝒪(k^{d-1}) elements) and this it tight by the result of Dell and van Melkebeek [STOC 2010, JACM 2014]. Still, the question of whether there exists a kernel for d-Hitting Set with fewer elements has remained one of the most major open problems in Kernelization.
In this paper, we first show that if we allow the kernelization to be lossy with a qualitatively better loss than the best possible approximation ratio of polynomial time approximation algorithms, then one can obtain kernels where the number of elements is linear for every fixed d. Further, based on this, we present our main result: we show that there exist approximate Turing kernelizations for d-Hitting Set that even beat the established bit-size lower bounds for exact kernelizations - in fact, we use a constant number of oracle calls, each with "near linear" (𝒪(k^{1+ε})) bit size, that is, almost the best one could hope for. Lastly, for two special cases of implicit 3-Hitting set, namely, FVST and CVD, we obtain the "best of both worlds" type of results - (1+ε)-approximate kernelizations with a linear number of vertices. In terms of size, this substantially improves the exact kernels of Fomin et al. [SODA 2018, TALG 2019], with simpler arguments.

Fedor V. Fomin, Tien-Nam Le, Daniel Lokshtanov, Saket Saurabh, Stéphan Thomassé, and Meirav Zehavi. Lossy Kernelization for (Implicit) Hitting Set Problems. In 31st Annual European Symposium on Algorithms (ESA 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 274, pp. 49:1-49:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

Copy BibTex To Clipboard

@InProceedings{fomin_et_al:LIPIcs.ESA.2023.49, author = {Fomin, Fedor V. and Le, Tien-Nam and Lokshtanov, Daniel and Saurabh, Saket and Thomass\'{e}, St\'{e}phan and Zehavi, Meirav}, title = {{Lossy Kernelization for (Implicit) Hitting Set Problems}}, booktitle = {31st Annual European Symposium on Algorithms (ESA 2023)}, pages = {49:1--49:14}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-295-2}, ISSN = {1868-8969}, year = {2023}, volume = {274}, editor = {G{\o}rtz, Inge Li and Farach-Colton, Martin and Puglisi, Simon J. and Herman, Grzegorz}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2023.49}, URN = {urn:nbn:de:0030-drops-187020}, doi = {10.4230/LIPIcs.ESA.2023.49}, annote = {Keywords: Hitting Set, Lossy Kernelization} }

Document

**Published in:** LIPIcs, Volume 274, 31st Annual European Symposium on Algorithms (ESA 2023)

We study the parameterized complexity of two classic problems on directed graphs: Hamiltonian Cycle and its generalization Longest Cycle. Since 2008, it is known that Hamiltonian Cycle is W[1]-hard when parameterized by directed treewidth [Lampis et al., ISSAC'08]. By now, the question of whether it is FPT parameterized by the directed feedback vertex set (DFVS) number has become a longstanding open problem. In particular, the DFVS number is the largest natural directed width measure studied in the literature. In this paper, we provide a negative answer to the question, showing that even for the DFVS number, the problem remains W[1]-hard. As a consequence, we also obtain that Longest Cycle is W[1]-hard on directed graphs when parameterized multiplicatively above girth, in contrast to the undirected case. This resolves an open question posed by Fomin et al. [ACM ToCT'21] and Gutin and Mnich [arXiv:2207.12278]. Our hardness results apply to the path versions of the problems as well. On the positive side, we show that Longest Path parameterized multiplicatively above girth belongs to the class XP.

Ashwin Jacob, Michał Włodarczyk, and Meirav Zehavi. Finding Long Directed Cycles Is Hard Even When DFVS Is Small or Girth Is Large. In 31st Annual European Symposium on Algorithms (ESA 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 274, pp. 65:1-65:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

Copy BibTex To Clipboard

@InProceedings{jacob_et_al:LIPIcs.ESA.2023.65, author = {Jacob, Ashwin and W{\l}odarczyk, Micha{\l} and Zehavi, Meirav}, title = {{Finding Long Directed Cycles Is Hard Even When DFVS Is Small or Girth Is Large}}, booktitle = {31st Annual European Symposium on Algorithms (ESA 2023)}, pages = {65:1--65:17}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-295-2}, ISSN = {1868-8969}, year = {2023}, volume = {274}, editor = {G{\o}rtz, Inge Li and Farach-Colton, Martin and Puglisi, Simon J. and Herman, Grzegorz}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2023.65}, URN = {urn:nbn:de:0030-drops-187184}, doi = {10.4230/LIPIcs.ESA.2023.65}, annote = {Keywords: Hamiltonian cycle, longest path, directed feedback vertex set, directed graphs, parameterized complexity} }

Document

**Published in:** LIPIcs, Volume 272, 48th International Symposium on Mathematical Foundations of Computer Science (MFCS 2023)

Pursuit-evasion games have been intensively studied for several decades due to their numerous applications in artificial intelligence, robot motion planning, database theory, distributed computing, and algorithmic theory. Cops and Robber (CnR) is one of the most well-known pursuit-evasion games played on graphs, where multiple cops pursue a single robber. The aim is to compute the cop number of a graph, k, which is the minimum number of cops that ensures the capture of the robber.
From the viewpoint of parameterized complexity, CnR is W[2]-hard parameterized by k [Fomin et al., TCS, 2010]. Thus, we study structural parameters of the input graph. We begin with the vertex cover number (vcn). First, we establish that k ≤ vcn/3+1. Second, we prove that CnR parameterized by vcn is FPT by designing an exponential kernel. We complement this result by showing that it is unlikely for CnR parameterized by vcn to admit a polynomial compression. We extend our exponential kernels to the parameters cluster vertex deletion number and deletion to stars number, and design a linear vertex kernel for neighborhood diversity. Additionally, we extend all of our results to several well-studied variations of CnR.

Harmender Gahlawat and Meirav Zehavi. Parameterized Analysis of the Cops and Robber Game. In 48th International Symposium on Mathematical Foundations of Computer Science (MFCS 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 272, pp. 49:1-49:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

Copy BibTex To Clipboard

@InProceedings{gahlawat_et_al:LIPIcs.MFCS.2023.49, author = {Gahlawat, Harmender and Zehavi, Meirav}, title = {{Parameterized Analysis of the Cops and Robber Game}}, booktitle = {48th International Symposium on Mathematical Foundations of Computer Science (MFCS 2023)}, pages = {49:1--49:17}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-292-1}, ISSN = {1868-8969}, year = {2023}, volume = {272}, editor = {Leroux, J\'{e}r\^{o}me and Lombardy, Sylvain and Peleg, David}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2023.49}, URN = {urn:nbn:de:0030-drops-185837}, doi = {10.4230/LIPIcs.MFCS.2023.49}, annote = {Keywords: Cops and Robber, Kernelization, Graph Searching, Fixed parameter tractability} }

Document

**Published in:** LIPIcs, Volume 251, 14th Innovations in Theoretical Computer Science Conference (ITCS 2023)

Cut problems form one of the most fundamental classes of problems in algorithmic graph theory. In this paper, we initiate the algorithmic study of a high-dimensional cut problem. The problem we study, namely, Homological Hitting Set (HHS), is defined as follows: Given a nontrivial r-cycle z in a simplicial complex, find a set 𝒮 of r-dimensional simplices of minimum cardinality so that 𝒮 meets every cycle homologous to z. Our first result is that HHS admits a polynomial-time solution on triangulations of closed surfaces. Interestingly, the minimal solution is given in terms of the cocycles of the surface. Next, we provide an example of a 2-complex for which the (unique) minimal hitting set is not a cocycle. Furthermore, for general complexes, we show that HHS is W[1]-hard with respect to the solution size p. In contrast, on the positive side, we show that HHS admits an FPT algorithm with respect to p+Δ, where Δ is the maximum degree of the Hasse graph of the complex 𝖪.

Ulrich Bauer, Abhishek Rathod, and Meirav Zehavi. On Computing Homological Hitting Sets. In 14th Innovations in Theoretical Computer Science Conference (ITCS 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 251, pp. 13:1-13:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)

Copy BibTex To Clipboard

@InProceedings{bauer_et_al:LIPIcs.ITCS.2023.13, author = {Bauer, Ulrich and Rathod, Abhishek and Zehavi, Meirav}, title = {{On Computing Homological Hitting Sets}}, booktitle = {14th Innovations in Theoretical Computer Science Conference (ITCS 2023)}, pages = {13:1--13:21}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-263-1}, ISSN = {1868-8969}, year = {2023}, volume = {251}, editor = {Tauman Kalai, Yael}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITCS.2023.13}, URN = {urn:nbn:de:0030-drops-175169}, doi = {10.4230/LIPIcs.ITCS.2023.13}, annote = {Keywords: Algorithmic topology, Cut problems, Surfaces, Parameterized complexity} }

Document

**Published in:** LIPIcs, Volume 249, 17th International Symposium on Parameterized and Exact Computation (IPEC 2022)

The Delaunay graph of a point set P ⊆ ℝ² is the plane graph with the vertex-set P and the edge-set that contains {p,p'} if there exists a disc whose intersection with P is exactly {p,p'}. Accordingly, a triangulated graph G is Delaunay realizable if there exists a triangulation of the Delaunay graph of some P ⊆ ℝ², called a Delaunay triangulation of P, that is isomorphic to G. The objective of Delaunay Realization is to compute a point set P ⊆ ℝ² that realizes a given graph G (if such a P exists). Known algorithms do not solve Delaunay Realization as they are non-constructive. Obtaining a constructive algorithm for Delaunay Realization was mentioned as an open problem by Hiroshima et al. [Hiroshima et al., 2000]. We design an n^𝒪(n)-time constructive algorithm for Delaunay Realization. In fact, our algorithm outputs sets of points with integer coordinates.

Akanksha Agrawal, Saket Saurabh, and Meirav Zehavi. A Finite Algorithm for the Realizabilty of a Delaunay Triangulation. In 17th International Symposium on Parameterized and Exact Computation (IPEC 2022). Leibniz International Proceedings in Informatics (LIPIcs), Volume 249, pp. 1:1-1:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2022)

Copy BibTex To Clipboard

@InProceedings{agrawal_et_al:LIPIcs.IPEC.2022.1, author = {Agrawal, Akanksha and Saurabh, Saket and Zehavi, Meirav}, title = {{A Finite Algorithm for the Realizabilty of a Delaunay Triangulation}}, booktitle = {17th International Symposium on Parameterized and Exact Computation (IPEC 2022)}, pages = {1:1--1:16}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-260-0}, ISSN = {1868-8969}, year = {2022}, volume = {249}, editor = {Dell, Holger and Nederlof, Jesper}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.IPEC.2022.1}, URN = {urn:nbn:de:0030-drops-173573}, doi = {10.4230/LIPIcs.IPEC.2022.1}, annote = {Keywords: Delaunay Triangulation, Delaunay Realization, Finite Algorithm, Integer Coordinate Realization} }

Document

**Published in:** LIPIcs, Volume 242, 22nd International Workshop on Algorithms in Bioinformatics (WABI 2022)

We define two new computational problems in the domain of perfect genome rearrangements, and propose three algorithms to solve them. The rearrangement scenarios modeled by the problems consider Reversal and Block Interchange operations, and a PQ-tree is utilized to guide the allowed operations and to compute their weights. In the first problem, Constrained TreeToString Divergence (CTTSD), we define the basic structure-informed rearrangement based divergence measure. Here, we assume that the gene order members of the gene cluster from which the PQ-tree is constructed are permutations. The PQ-tree representing the gene cluster is ordered such that the series of gene IDs spelled by its leaves is equivalent to the reference gene order. Then, a structure-informed gene rearrangement measure is computed between the ordered PQ-tree and the target gene order. The second problem, TreeToString Divergence (TTSD), generalizes CTTSD, where the gene order members are not necessarily permutations and the structure-informed rearrangement based divergence measure is extended to also consider up to d_S and d_T gene insertion and deletion operations, respectively, when modelling the PQ-tree informed divergence process from the reference order to the target order.
The first algorithm solves CTTSD in O(n γ² ⋅ (m_p ⋅ 1.381^γ + m_q)) time and O(n²) space, where γ is the maximum number of children of a node, n is the length of the string and the number of leaves in the tree, and m_p and m_q are the number of P-nodes and Q-nodes in the tree, respectively. If one of the penalties of CTTSD is 0, then the algorithm runs in O(n m γ²) time and O(n²) space. The second algorithm solves TTSD in O(n² γ² {d_T}² {d_S}² m² (m_p ⋅ 5^γ γ + m_q)) time and O(d_T d_S m (m n + 5^γ)) space, where γ is the maximum number of children of a node, n is the length of the string, m is the number of leaves in the tree, m_p and m_q are the number of P-nodes and Q-nodes in the tree, respectively, and allowing d_T deletions from the tree and d_S deletions from the string. The third algorithm is intended to reduce the space complexity of the second algorithm. It solves a variant of the problem (where one of the penalties of TTSD is 0) in O(n γ² {d_T}² {d_S}² m² (m_p ⋅ 4^γ γ²n(d_T+d_S+m+n) + m_q)) time and O(γ² n m² d_T d_S (d_T+d_S+m+n)) space.
The algorithm is implemented as a software tool, denoted MEM-Rearrange, and applied to the comparative and evolutionary analysis of 59 chromosomal gene clusters extracted from a dataset of 1,487 prokaryotic genomes.

Eden Ozery, Meirav Zehavi, and Michal Ziv-Ukelson. New Algorithms for Structure Informed Genome Rearrangement. In 22nd International Workshop on Algorithms in Bioinformatics (WABI 2022). Leibniz International Proceedings in Informatics (LIPIcs), Volume 242, pp. 11:1-11:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2022)

Copy BibTex To Clipboard

@InProceedings{ozery_et_al:LIPIcs.WABI.2022.11, author = {Ozery, Eden and Zehavi, Meirav and Ziv-Ukelson, Michal}, title = {{New Algorithms for Structure Informed Genome Rearrangement}}, booktitle = {22nd International Workshop on Algorithms in Bioinformatics (WABI 2022)}, pages = {11:1--11:19}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-243-3}, ISSN = {1868-8969}, year = {2022}, volume = {242}, editor = {Boucher, Christina and Rahmann, Sven}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2022.11}, URN = {urn:nbn:de:0030-drops-170454}, doi = {10.4230/LIPIcs.WABI.2022.11}, annote = {Keywords: PQ-tree, Gene Cluster, Breakpoint Distance} }

Document

Track A: Algorithms, Complexity and Games

**Published in:** LIPIcs, Volume 229, 49th International Colloquium on Automata, Languages, and Programming (ICALP 2022)

The problem of packing of equal disks (or circles) into a rectangle is a fundamental geometric problem. (By a packing here we mean an arrangement of disks in a rectangle without overlapping.) We consider the following algorithmic generalization of the equal disk packing problem. In this problem, for a given packing of equal disks into a rectangle, the question is whether by changing positions of a small number of disks, we can allocate space for packing more disks. More formally, in the repacking problem, for a given set of n equal disks packed into a rectangle and integers k and h, we ask whether it is possible by changing positions of at most h disks to pack n+k disks. Thus the problem of packing equal disks is the special case of our problem with n = h = 0.
While the computational complexity of packing equal disks into a rectangle remains open, we prove that the repacking problem is NP-hard already for h = 0. Our main algorithmic contribution is an algorithm that solves the repacking problem in time (h+k)^𝒪(h+k)⋅|I|^𝒪(1), where |I| is the input size. That is, the problem is fixed-parameter tractable parameterized by k and h.

Fedor V. Fomin, Petr A. Golovach, Tanmay Inamdar, and Meirav Zehavi. (Re)packing Equal Disks into Rectangle. In 49th International Colloquium on Automata, Languages, and Programming (ICALP 2022). Leibniz International Proceedings in Informatics (LIPIcs), Volume 229, pp. 60:1-60:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2022)

Copy BibTex To Clipboard

@InProceedings{fomin_et_al:LIPIcs.ICALP.2022.60, author = {Fomin, Fedor V. and Golovach, Petr A. and Inamdar, Tanmay and Zehavi, Meirav}, title = {{(Re)packing Equal Disks into Rectangle}}, booktitle = {49th International Colloquium on Automata, Languages, and Programming (ICALP 2022)}, pages = {60:1--60:17}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-235-8}, ISSN = {1868-8969}, year = {2022}, volume = {229}, editor = {Boja\'{n}czyk, Miko{\l}aj and Merelli, Emanuela and Woodruff, David P.}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2022.60}, URN = {urn:nbn:de:0030-drops-164011}, doi = {10.4230/LIPIcs.ICALP.2022.60}, annote = {Keywords: circle packing, unit disks, parameterized complexity, fixed-parameter tractability} }

Document

**Published in:** Dagstuhl Reports, Volume 11, Issue 6 (2021)

This report documents the program and the outcomes of Dagstuhl Seminar 21293 "Parameterized Complexity in Graph Drawing". The seminar was held mostly in-person from July 18 to July 23, 2021. It brought together 28 researchers from the Graph Drawing and the Parameterized Complexity research communities with the aim to discuss and explore open research questions on the interface between the two fields. The report collects the abstracts of talks and open problems presented in the seminar, as well as brief progress reports from the working groups.

Robert Ganian, Fabrizio Montecchiani, Martin Nöllenburg, and Meirav Zehavi. Parameterized Complexity in Graph Drawing (Dagstuhl Seminar 21293). In Dagstuhl Reports, Volume 11, Issue 6, pp. 82-123, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2021)

Copy BibTex To Clipboard

@Article{ganian_et_al:DagRep.11.6.82, author = {Ganian, Robert and Montecchiani, Fabrizio and N\"{o}llenburg, Martin and Zehavi, Meirav}, title = {{Parameterized Complexity in Graph Drawing (Dagstuhl Seminar 21293)}}, pages = {82--123}, journal = {Dagstuhl Reports}, ISSN = {2192-5283}, year = {2021}, volume = {11}, number = {6}, editor = {Ganian, Robert and Montecchiani, Fabrizio and N\"{o}llenburg, Martin and Zehavi, Meirav}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/DagRep.11.6.82}, URN = {urn:nbn:de:0030-drops-155817}, doi = {10.4230/DagRep.11.6.82}, annote = {Keywords: exact computation, graph algorithms, graph drawing, parameterized complexity} }

Document

**Published in:** LIPIcs, Volume 212, 32nd International Symposium on Algorithms and Computation (ISAAC 2021)

Grid graphs, and, more generally, k×r grid graphs, form one of the most basic classes of geometric graphs. Over the past few decades, a large body of works studied the (in)tractability of various computational problems on grid graphs, which often yield substantially faster algorithms than general graphs. Unfortunately, the recognition of a grid graph (given a graph G, decide whether it can be embedded into a grid graph) is particularly hard - it was shown to be NP-hard even on trees of pathwidth 3 already in 1987. Yet, in this paper, we provide several positive results in this regard in the framework of parameterized complexity (additionally, we present new and complementary hardness results). Specifically, our contribution is threefold. First, we show that the problem is fixed-parameter tractable (FPT) parameterized by k+mcc where mcc is the maximum size of a connected component of G. This also implies that the problem is FPT parameterized by td+k where td is the treedepth of G, as td ≤ mcc (to be compared with the hardness for pathwidth 2 where k = 3). (We note that when k and r are unrestricted, the problem is trivially FPT parameterized by td.) Further, we derive as a corollary that strip packing is FPT with respect to the height of the strip plus the maximum of the dimensions of the packed rectangles, which was previously only known to be in XP. Second, we present a new parameterization, denoted a_G, relating graph distance to geometric distance, which may be of independent interest. We show that the problem is para-NP-hard parameterized by a_G, but FPT parameterized by a_G on trees, as well as FPT parameterized by k+a_G. Third, we show that the recognition of k× r grid graphs is NP-hard on graphs of pathwidth 2 where k = 3. Moreover, when k and r are unrestricted, we show that the problem is NP-hard on trees of pathwidth 2, but trivially solvable in polynomial time on graphs of pathwidth 1.

Siddharth Gupta, Guy Sa'ar, and Meirav Zehavi. Grid Recognition: Classical and Parameterized Computational Perspectives. In 32nd International Symposium on Algorithms and Computation (ISAAC 2021). Leibniz International Proceedings in Informatics (LIPIcs), Volume 212, pp. 37:1-37:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2021)

Copy BibTex To Clipboard

@InProceedings{gupta_et_al:LIPIcs.ISAAC.2021.37, author = {Gupta, Siddharth and Sa'ar, Guy and Zehavi, Meirav}, title = {{Grid Recognition: Classical and Parameterized Computational Perspectives}}, booktitle = {32nd International Symposium on Algorithms and Computation (ISAAC 2021)}, pages = {37:1--37:15}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-214-3}, ISSN = {1868-8969}, year = {2021}, volume = {212}, editor = {Ahn, Hee-Kap and Sadakane, Kunihiko}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ISAAC.2021.37}, URN = {urn:nbn:de:0030-drops-154703}, doi = {10.4230/LIPIcs.ISAAC.2021.37}, annote = {Keywords: Grid Recognition, Grid Graph, Parameterized Complexity} }

Document

Complete Volume

**Published in:** LIPIcs, Volume 214, 16th International Symposium on Parameterized and Exact Computation (IPEC 2021)

LIPIcs, Volume 214, IPEC 2021, Complete Volume

16th International Symposium on Parameterized and Exact Computation (IPEC 2021). Leibniz International Proceedings in Informatics (LIPIcs), Volume 214, pp. 1-474, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2021)

Copy BibTex To Clipboard

@Proceedings{golovach_et_al:LIPIcs.IPEC.2021, title = {{LIPIcs, Volume 214, IPEC 2021, Complete Volume}}, booktitle = {16th International Symposium on Parameterized and Exact Computation (IPEC 2021)}, pages = {1--474}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-216-7}, ISSN = {1868-8969}, year = {2021}, volume = {214}, editor = {Golovach, Petr A. and Zehavi, Meirav}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.IPEC.2021}, URN = {urn:nbn:de:0030-drops-153828}, doi = {10.4230/LIPIcs.IPEC.2021}, annote = {Keywords: LIPIcs, Volume 214, IPEC 2021, Complete Volume} }

Document

Front Matter

**Published in:** LIPIcs, Volume 214, 16th International Symposium on Parameterized and Exact Computation (IPEC 2021)

Front Matter, Table of Contents, Preface, Conference Organization

16th International Symposium on Parameterized and Exact Computation (IPEC 2021). Leibniz International Proceedings in Informatics (LIPIcs), Volume 214, pp. 0:i-0:xviii, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2021)

Copy BibTex To Clipboard

@InProceedings{golovach_et_al:LIPIcs.IPEC.2021.0, author = {Golovach, Petr A. and Zehavi, Meirav}, title = {{Front Matter, Table of Contents, Preface, Conference Organization}}, booktitle = {16th International Symposium on Parameterized and Exact Computation (IPEC 2021)}, pages = {0:i--0:xviii}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-216-7}, ISSN = {1868-8969}, year = {2021}, volume = {214}, editor = {Golovach, Petr A. and Zehavi, Meirav}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.IPEC.2021.0}, URN = {urn:nbn:de:0030-drops-153834}, doi = {10.4230/LIPIcs.IPEC.2021.0}, annote = {Keywords: Front Matter, Table of Contents, Preface, Conference Organization} }

Document

**Published in:** LIPIcs, Volume 187, 38th International Symposium on Theoretical Aspects of Computer Science (STACS 2021)

Over the past few decades, the study of dense structures from the perspective of approximation algorithms has become a wide area of research. However, from the viewpoint of parameterized algorithm, this area is largely unexplored. In particular, properties of random samples have been successfully deployed to design approximation schemes for a number of fundamental problems on dense structures [Arora et al. FOCS 1995, Goldreich et al. FOCS 1996, Giotis and Guruswami SODA 2006, Karpinksi and Schudy STOC 2009]. In this paper, we fill this gap, and harness the power of random samples as well as structure theory to design kernelization as well as parameterized algorithms on dense structures. In particular, we obtain linear vertex kernels for Edge-Disjoint Paths, Edge Odd Cycle Transversal, Minimum Bisection, d-Way Cut, Multiway Cut and Multicut on everywhere dense graphs. In fact, these kernels are obtained by designing a polynomial-time algorithm when the corresponding parameter is at most Ω(n). Additionally, we obtain a cubic kernel for Vertex-Disjoint Paths on everywhere dense graphs. In addition to kernelization results, we obtain randomized subexponential-time parameterized algorithms for Edge Odd Cycle Transversal, Minimum Bisection, and d-Way Cut. Finally, we show how all of our results (as well as EPASes for these problems) can be de-randomized.

William Lochet, Daniel Lokshtanov, Saket Saurabh, and Meirav Zehavi. Exploiting Dense Structures in Parameterized Complexity. In 38th International Symposium on Theoretical Aspects of Computer Science (STACS 2021). Leibniz International Proceedings in Informatics (LIPIcs), Volume 187, pp. 50:1-50:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2021)

Copy BibTex To Clipboard

@InProceedings{lochet_et_al:LIPIcs.STACS.2021.50, author = {Lochet, William and Lokshtanov, Daniel and Saurabh, Saket and Zehavi, Meirav}, title = {{Exploiting Dense Structures in Parameterized Complexity}}, booktitle = {38th International Symposium on Theoretical Aspects of Computer Science (STACS 2021)}, pages = {50:1--50:17}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-180-1}, ISSN = {1868-8969}, year = {2021}, volume = {187}, editor = {Bl\"{a}ser, Markus and Monmege, Benjamin}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.STACS.2021.50}, URN = {urn:nbn:de:0030-drops-136950}, doi = {10.4230/LIPIcs.STACS.2021.50}, annote = {Keywords: Dense graphs, disjoint paths, odd cycle transversal, kernels} }

Document

**Published in:** LIPIcs, Volume 182, 40th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2020)

In the Stable Marriage problem, when the preference lists are complete, all agents of the smaller side can be matched. However, this need not be true when preference lists are incomplete. In most real-life situations, where agents participate in the matching market voluntarily and submit their preferences, it is natural to assume that each agent wants to be matched to someone in his/her preference list as opposed to being unmatched. In light of the Rural Hospital Theorem, we have to relax the "no blocking pair" condition for stable matchings in order to match more agents. In this paper, we study the question of matching more agents with fewest possible blocking edges. In particular, the goal is to find a matching whose size exceeds that of a stable matching in the graph by at least t and has at most k blocking edges. We study this question in the realm of parameterized complexity with respect to several natural parameters, k,t,d, where d is the maximum length of a preference list. Unfortunately, the problem remains intractable even for the combined parameter k+t+d. Thus, we extend our study to the local search variant of this problem, in which we search for a matching that not only fulfills each of the above conditions but is "closest", in terms of its symmetric difference to the given stable matching, and obtain an FPT algorithm.

Sushmita Gupta, Pallavi Jain, Sanjukta Roy, Saket Saurabh, and Meirav Zehavi. On the (Parameterized) Complexity of Almost Stable Marriage. In 40th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2020). Leibniz International Proceedings in Informatics (LIPIcs), Volume 182, pp. 24:1-24:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2020)

Copy BibTex To Clipboard

@InProceedings{gupta_et_al:LIPIcs.FSTTCS.2020.24, author = {Gupta, Sushmita and Jain, Pallavi and Roy, Sanjukta and Saurabh, Saket and Zehavi, Meirav}, title = {{On the (Parameterized) Complexity of Almost Stable Marriage}}, booktitle = {40th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2020)}, pages = {24:1--24:17}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-174-0}, ISSN = {1868-8969}, year = {2020}, volume = {182}, editor = {Saxena, Nitin and Simon, Sunil}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.FSTTCS.2020.24}, URN = {urn:nbn:de:0030-drops-132655}, doi = {10.4230/LIPIcs.FSTTCS.2020.24}, annote = {Keywords: Stable Matching, Parameterized Complexity, Local Search} }

Document

**Published in:** LIPIcs, Volume 172, 20th International Workshop on Algorithms in Bioinformatics (WABI 2020)

We define a new problem in comparative genomics, denoted PQ-Tree Search, that takes as input a PQ-tree T representing the known gene orders of a gene cluster of interest, a gene-to-gene substitution scoring function h, integer parameters d_T and d_S, and a new genome S. The objective is to identify in S approximate new instances of the gene cluster that could vary from the known gene orders by genome rearrangements that are constrained by T, by gene substitutions that are governed by h, and by gene deletions and insertions that are bounded from above by d_T and d_S, respectively. We prove that the PQ-Tree Search problem is NP-hard and propose a parameterized algorithm that solves the optimization variant of PQ-Tree Search in O^*(2^{γ}) time, where γ is the maximum degree of a node in T and O^* is used to hide factors polynomial in the input size.
The algorithm is implemented as a search tool, denoted PQFinder, and applied to search for instances of chromosomal gene clusters in plasmids, within a dataset of 1,487 prokaryotic genomes. We report on 29 chromosomal gene clusters that are rearranged in plasmids, where the rearrangements are guided by the corresponding PQ-tree. One of these results, coding for a heavy metal efflux pump, is further analysed to exemplify how PQFinder can be harnessed to reveal interesting new structural variants of known gene clusters.

Galia R. Zimerman, Dina Svetlitsky, Meirav Zehavi, and Michal Ziv-Ukelson. Approximate Search for Known Gene Clusters in New Genomes Using PQ-Trees. In 20th International Workshop on Algorithms in Bioinformatics (WABI 2020). Leibniz International Proceedings in Informatics (LIPIcs), Volume 172, pp. 1:1-1:24, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2020)

Copy BibTex To Clipboard

@InProceedings{zimerman_et_al:LIPIcs.WABI.2020.1, author = {Zimerman, Galia R. and Svetlitsky, Dina and Zehavi, Meirav and Ziv-Ukelson, Michal}, title = {{Approximate Search for Known Gene Clusters in New Genomes Using PQ-Trees}}, booktitle = {20th International Workshop on Algorithms in Bioinformatics (WABI 2020)}, pages = {1:1--1:24}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-161-0}, ISSN = {1868-8969}, year = {2020}, volume = {172}, editor = {Kingsford, Carl and Pisanti, Nadia}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2020.1}, URN = {urn:nbn:de:0030-drops-127906}, doi = {10.4230/LIPIcs.WABI.2020.1}, annote = {Keywords: PQ-Tree, Gene Cluster, Efflux Pump} }

Document

Track A: Algorithms, Complexity and Games

**Published in:** LIPIcs, Volume 168, 47th International Colloquium on Automata, Languages, and Programming (ICALP 2020)

We prove that the Hadwiger number of an n-vertex graph G (the maximum size of a clique minor in G) cannot be computed in time n^o(n), unless the Exponential Time Hypothesis (ETH) fails. This resolves a well-known open question in the area of exact exponential algorithms. The technique developed for resolving the Hadwiger number problem has a wider applicability. We use it to rule out the existence of n^o(n)-time algorithms (up to ETH) for a large class of computational problems concerning edge contractions in graphs.

Fedor V. Fomin, Daniel Lokshtanov, Ivan Mihajlin, Saket Saurabh, and Meirav Zehavi. Computation of Hadwiger Number and Related Contraction Problems: Tight Lower Bounds. In 47th International Colloquium on Automata, Languages, and Programming (ICALP 2020). Leibniz International Proceedings in Informatics (LIPIcs), Volume 168, pp. 49:1-49:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2020)

Copy BibTex To Clipboard

@InProceedings{fomin_et_al:LIPIcs.ICALP.2020.49, author = {Fomin, Fedor V. and Lokshtanov, Daniel and Mihajlin, Ivan and Saurabh, Saket and Zehavi, Meirav}, title = {{Computation of Hadwiger Number and Related Contraction Problems: Tight Lower Bounds}}, booktitle = {47th International Colloquium on Automata, Languages, and Programming (ICALP 2020)}, pages = {49:1--49:18}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-138-2}, ISSN = {1868-8969}, year = {2020}, volume = {168}, editor = {Czumaj, Artur and Dawar, Anuj and Merelli, Emanuela}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2020.49}, URN = {urn:nbn:de:0030-drops-124568}, doi = {10.4230/LIPIcs.ICALP.2020.49}, annote = {Keywords: Hadwiger Number, Exponential-Time Hypothesis, Exact Algorithms, Edge Contraction Problems} }

Document

**Published in:** LIPIcs, Volume 162, 17th Scandinavian Symposium and Workshops on Algorithm Theory (SWAT 2020)

The Terrain Guarding problem is a well-known variant of the famous Art Gallery problem. Only second to Art Gallery, it is the most well-studied visibility problem in Discrete and Computational Geometry, which has also attracted attention from the viewpoint of Parameterized complexity. In this paper, we focus on the parameterized complexity of Terrain Guarding (both discrete and continuous) with respect to two natural parameters. First we show that, when parameterized by the number r of reflex vertices in the input terrain, the problem has a polynomial kernel. We also show that, when parameterized by the number c of minima in the terrain, Discrete Orthogonal Terrain Guarding has an XP algorithm.

Akanksha Agrawal, Sudeshna Kolay, and Meirav Zehavi. Parameter Analysis for Guarding Terrains. In 17th Scandinavian Symposium and Workshops on Algorithm Theory (SWAT 2020). Leibniz International Proceedings in Informatics (LIPIcs), Volume 162, pp. 4:1-4:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2020)

Copy BibTex To Clipboard

@InProceedings{agrawal_et_al:LIPIcs.SWAT.2020.4, author = {Agrawal, Akanksha and Kolay, Sudeshna and Zehavi, Meirav}, title = {{Parameter Analysis for Guarding Terrains}}, booktitle = {17th Scandinavian Symposium and Workshops on Algorithm Theory (SWAT 2020)}, pages = {4:1--4:18}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-150-4}, ISSN = {1868-8969}, year = {2020}, volume = {162}, editor = {Albers, Susanne}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SWAT.2020.4}, URN = {urn:nbn:de:0030-drops-122514}, doi = {10.4230/LIPIcs.SWAT.2020.4}, annote = {Keywords: Terrain Guarding, Reflex Vertices, Terrain Minima, FPT Algorithm, XP Algorithm, Kernelization} }

Document

**Published in:** LIPIcs, Volume 162, 17th Scandinavian Symposium and Workshops on Algorithm Theory (SWAT 2020)

We study the Steiner Tree problem on unit disk graphs. Given a n vertex unit disk graph G, a subset R⊆ V(G) of t vertices and a positive integer k, the objective is to decide if there exists a tree T in G that spans over all vertices of R and uses at most k vertices from V⧵ R. The vertices of R are referred to as terminals and the vertices of V(G)⧵ R as Steiner vertices. First, we show that the problem is NP-hard. Next, we prove that the Steiner Tree problem on unit disk graphs can be solved in n^{O(√{t+k})} time. We also show that the Steiner Tree problem on unit disk graphs parameterized by k has an FPT algorithm with running time 2^{O(k)}n^{O(1)}. In fact, the algorithms are designed for a more general class of graphs, called clique-grid graphs [Fomin et al., 2019]. We mention that the algorithmic results can be made to work for Steiner Tree on disk graphs with bounded aspect ratio. Finally, we prove that Steiner Tree on disk graphs parameterized by k is W[1]-hard.

Sujoy Bhore, Paz Carmi, Sudeshna Kolay, and Meirav Zehavi. Parameterized Study of Steiner Tree on Unit Disk Graphs. In 17th Scandinavian Symposium and Workshops on Algorithm Theory (SWAT 2020). Leibniz International Proceedings in Informatics (LIPIcs), Volume 162, pp. 13:1-13:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2020)

Copy BibTex To Clipboard

@InProceedings{bhore_et_al:LIPIcs.SWAT.2020.13, author = {Bhore, Sujoy and Carmi, Paz and Kolay, Sudeshna and Zehavi, Meirav}, title = {{Parameterized Study of Steiner Tree on Unit Disk Graphs}}, booktitle = {17th Scandinavian Symposium and Workshops on Algorithm Theory (SWAT 2020)}, pages = {13:1--13:18}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-150-4}, ISSN = {1868-8969}, year = {2020}, volume = {162}, editor = {Albers, Susanne}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SWAT.2020.13}, URN = {urn:nbn:de:0030-drops-122607}, doi = {10.4230/LIPIcs.SWAT.2020.13}, annote = {Keywords: Unit Disk Graphs, FPT, Subexponential exact algorithms, NP-Hardness, W-Hardness} }

Document

**Published in:** LIPIcs, Volume 164, 36th International Symposium on Computational Geometry (SoCG 2020)

The Art Gallery problem is a fundamental visibility problem in Computational Geometry. The input consists of a simple polygon P, (possibly infinite) sets G and C of points within P, and an integer k; the task is to decide if at most k guards can be placed on points in G so that every point in C is visible to at least one guard. In the classic formulation of Art Gallery, G and C consist of all the points within P. Other well-known variants restrict G and C to consist either of all the points on the boundary of P or of all the vertices of P. Recently, three new important discoveries were made: the above mentioned variants of Art Gallery are all W[1]-hard with respect to k [Bonnet and Miltzow, ESA'16], the classic variant has an O(log k)-approximation algorithm [Bonnet and Miltzow, SoCG'17], and it may require irrational guards [Abrahamsen et al., SoCG'17]. Building upon the third result, the classic variant and the case where G consists only of all the points on the boundary of P were both shown to be ∃ℝ-complete [Abrahamsen et al., STOC'18]. Even when both G and C consist only of all the points on the boundary of P, the problem is not known to be in NP.
Given the first discovery, the following question was posed by Giannopoulos [Lorentz Center Workshop, 2016]: Is Art Gallery FPT with respect to r, the number of reflex vertices? In light of the developments above, we focus on the variant where G and C consist of all the vertices of P, called Vertex-Vertex Art Gallery. Apart from being a variant of Art Gallery, this case can also be viewed as the classic Dominating Set problem in the visibility graph of a polygon. In this article, we show that the answer to the question by Giannopoulos is positive: Vertex-Vertex Art Gallery is solvable in time r^O(r²)n^O(1). Furthermore, our approach extends to assert that Vertex-Boundary Art Gallery and Boundary-Vertex Art Gallery are both FPT as well. To this end, we utilize structural properties of "almost convex polygons" to present a two-stage reduction from Vertex-Vertex Art Gallery to a new constraint satisfaction problem (whose solution is also provided in this paper) where constraints have arity 2 and involve monotone functions.

Akanksha Agrawal, Kristine V. K. Knudsen, Daniel Lokshtanov, Saket Saurabh, and Meirav Zehavi. The Parameterized Complexity of Guarding Almost Convex Polygons. In 36th International Symposium on Computational Geometry (SoCG 2020). Leibniz International Proceedings in Informatics (LIPIcs), Volume 164, pp. 3:1-3:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2020)

Copy BibTex To Clipboard

@InProceedings{agrawal_et_al:LIPIcs.SoCG.2020.3, author = {Agrawal, Akanksha and Knudsen, Kristine V. K. and Lokshtanov, Daniel and Saurabh, Saket and Zehavi, Meirav}, title = {{The Parameterized Complexity of Guarding Almost Convex Polygons}}, booktitle = {36th International Symposium on Computational Geometry (SoCG 2020)}, pages = {3:1--3:16}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-143-6}, ISSN = {1868-8969}, year = {2020}, volume = {164}, editor = {Cabello, Sergio and Chen, Danny Z.}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2020.3}, URN = {urn:nbn:de:0030-drops-121614}, doi = {10.4230/LIPIcs.SoCG.2020.3}, annote = {Keywords: Art Gallery, Reflex vertices, Monotone 2-CSP, Parameterized Complexity, Fixed Parameter Tractability} }

Document

**Published in:** LIPIcs, Volume 164, 36th International Symposium on Computational Geometry (SoCG 2020)

We present an algorithm for the extensively studied Long Path and Long Cycle problems on unit disk graphs that runs in time 2^{𝒪(√k)}(n+m). Under the Exponential Time Hypothesis, Long Path and Long Cycle on unit disk graphs cannot be solved in time 2^{o(√k)}(n+m)^𝒪(1) [de Berg et al., STOC 2018], hence our algorithm is optimal. Besides the 2^{𝒪(√k)}(n+m)^𝒪(1)-time algorithm for the (arguably) much simpler Vertex Cover problem by de Berg et al. [STOC 2018] (which easily follows from the existence of a 2k-vertex kernel for the problem), this is the only known ETH-optimal fixed-parameter tractable algorithm on UDGs. Previously, Long Path and Long Cycle on unit disk graphs were only known to be solvable in time 2^{𝒪(√klog k)}(n+m). This algorithm involved the introduction of a new type of a tree decomposition, entailing the design of a very tedious dynamic programming procedure. Our algorithm is substantially simpler: we completely avoid the use of this new type of tree decomposition. Instead, we use a marking procedure to reduce the problem to (a weighted version of) itself on a standard tree decomposition of width 𝒪(√k).

Fedor V. Fomin, Daniel Lokshtanov, Fahad Panolan, Saket Saurabh, and Meirav Zehavi. ETH-Tight Algorithms for Long Path and Cycle on Unit Disk Graphs. In 36th International Symposium on Computational Geometry (SoCG 2020). Leibniz International Proceedings in Informatics (LIPIcs), Volume 164, pp. 44:1-44:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2020)

Copy BibTex To Clipboard

@InProceedings{fomin_et_al:LIPIcs.SoCG.2020.44, author = {Fomin, Fedor V. and Lokshtanov, Daniel and Panolan, Fahad and Saurabh, Saket and Zehavi, Meirav}, title = {{ETH-Tight Algorithms for Long Path and Cycle on Unit Disk Graphs}}, booktitle = {36th International Symposium on Computational Geometry (SoCG 2020)}, pages = {44:1--44:18}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-143-6}, ISSN = {1868-8969}, year = {2020}, volume = {164}, editor = {Cabello, Sergio and Chen, Danny Z.}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2020.44}, URN = {urn:nbn:de:0030-drops-122024}, doi = {10.4230/LIPIcs.SoCG.2020.44}, annote = {Keywords: Optimality Program, ETH, Unit Disk Graphs, Parameterized Complexity, Long Path, Long Cycle} }

Document

**Published in:** LIPIcs, Volume 151, 11th Innovations in Theoretical Computer Science Conference (ITCS 2020)

Parameterization above a guarantee is a successful paradigm in Parameterized Complexity. To the best of our knowledge, all fixed-parameter tractable problems in this paradigm share an additive form defined as follows. Given an instance (I,k) of some (parameterized) problem Π with a guarantee g(I), decide whether I admits a solution of size at least (at most) k+g(I). Here, g(I) is usually a lower bound (resp. upper bound) on the maximum (resp. minimum) size of a solution. Since its introduction in 1999 for Max SAT and Max Cut (with g(I) being half the number of clauses and half the number of edges, respectively, in the input), analysis of parameterization above a guarantee has become a very active and fruitful topic of research.
We highlight a multiplicative form of parameterization above a guarantee: Given an instance (I,k) of some (parameterized) problem Π with a guarantee g(I), decide whether I admits a solution of size at least (resp. at most) k ⋅ g(I). In particular, we study the Long Cycle problem with a multiplicative parameterization above the girth g(I) of the input graph, and provide a parameterized algorithm for this problem. Apart from being of independent interest, this exemplifies how parameterization above a multiplicative guarantee can arise naturally. We also show that, for any fixed constant ε>0, multiplicative parameterization above g(I)^(1+ε) of Long Cycle yields para-NP-hardness, thus our parameterization is tight in this sense. We complement our main result with the design (or refutation of the existence) of algorithms for other problems parameterized multiplicatively above girth.

Fedor V. Fomin, Petr A. Golovach, Daniel Lokshtanov, Fahad Panolan, Saket Saurabh, and Meirav Zehavi. Parameterization Above a Multiplicative Guarantee. In 11th Innovations in Theoretical Computer Science Conference (ITCS 2020). Leibniz International Proceedings in Informatics (LIPIcs), Volume 151, pp. 39:1-39:13, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2020)

Copy BibTex To Clipboard

@InProceedings{fomin_et_al:LIPIcs.ITCS.2020.39, author = {Fomin, Fedor V. and Golovach, Petr A. and Lokshtanov, Daniel and Panolan, Fahad and Saurabh, Saket and Zehavi, Meirav}, title = {{Parameterization Above a Multiplicative Guarantee}}, booktitle = {11th Innovations in Theoretical Computer Science Conference (ITCS 2020)}, pages = {39:1--39:13}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-134-4}, ISSN = {1868-8969}, year = {2020}, volume = {151}, editor = {Vidick, Thomas}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITCS.2020.39}, URN = {urn:nbn:de:0030-drops-117248}, doi = {10.4230/LIPIcs.ITCS.2020.39}, annote = {Keywords: Parameterized Complexity, Above-Guarantee Parameterization, Girth} }

Document

**Published in:** LIPIcs, Volume 151, 11th Innovations in Theoretical Computer Science Conference (ITCS 2020)

In the past decade, the design of fault tolerant data structures for networks has become a central topic of research. Particular attention has been given to the construction of a subgraph H of a given digraph D with as fewest arcs/vertices as possible such that, after the failure of any set F of at most k ≥ 1 arcs, testing whether D-F has a certain property P is equivalent to testing whether H-F has that property. Here, reachability (or, more generally, distance preservation) is the most basic requirement to maintain to ensure that the network functions properly. Given a vertex s ∈ V(D), Baswana et al. [STOC'16] presented a construction of H with O(2^kn) arcs in time O(2^{k}nm) where n=|V(D)| and m= |E(D)| such that for any vertex v ∈ V(D): if there exists a path from s to v in D-F, then there also exists a path from s to v in H-F. Additionally, they gave a tight matching lower bound. While the question of the improvement of the dependency on k arises for special classes of digraphs, an arguably more basic research direction concerns the dependency on n (for reachability between a pair of vertices s,t ∈ V(D)) - which are the largest classes of digraphs where the dependency on n can be made sublinear, logarithmic or even constant? Already for the simple classes of directed paths and tournaments, Ω(n) arcs are mandatory. Nevertheless, we prove that "almost acyclicity" suffices to eliminate the dependency on n entirely for a broad class of dense digraphs called bounded independence digraphs. Also, the dependence in k is only a polynomial factor for this class of digraphs. In fact, our sparsification procedure extends to preserve parity-based reachability. Additionally, it finds notable applications in Kernelization: we prove that the classic Directed Feedback Arc Set (DFAS) problem as well as Directed Edge Odd Cycle Transversal (DEOCT) (which, in sharp contrast to DFAS, is W[1]-hard on general digraphs) admit polynomial kernels on bounded independence digraphs. In fact, for any p ∈ N, we can design a polynomial kernel for the problem of hitting all cycles of length ℓ where (ℓ mod p = 1). As a complementary result, we prove that DEOCT is NP-hard on tournaments by establishing a combinatorial identity between the minimum size of a feedback arc set and the minimum size of an edge odd cycle transversal. In passing, we also improve upon the running time of the sub-exponential FPT algorithm for DFAS in digraphs of bounded independence number given by Misra et at. [FSTTCS 2018], and give the first sub-exponential FPT algorithm for DEOCT in digraphs of bounded independence number.

William Lochet, Daniel Lokshtanov, Pranabendu Misra, Saket Saurabh, Roohani Sharma, and Meirav Zehavi. Fault Tolerant Subgraphs with Applications in Kernelization. In 11th Innovations in Theoretical Computer Science Conference (ITCS 2020). Leibniz International Proceedings in Informatics (LIPIcs), Volume 151, pp. 47:1-47:22, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2020)

Copy BibTex To Clipboard

@InProceedings{lochet_et_al:LIPIcs.ITCS.2020.47, author = {Lochet, William and Lokshtanov, Daniel and Misra, Pranabendu and Saurabh, Saket and Sharma, Roohani and Zehavi, Meirav}, title = {{Fault Tolerant Subgraphs with Applications in Kernelization}}, booktitle = {11th Innovations in Theoretical Computer Science Conference (ITCS 2020)}, pages = {47:1--47:22}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-134-4}, ISSN = {1868-8969}, year = {2020}, volume = {151}, editor = {Vidick, Thomas}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITCS.2020.47}, URN = {urn:nbn:de:0030-drops-117326}, doi = {10.4230/LIPIcs.ITCS.2020.47}, annote = {Keywords: sparsification, kernelization, fault tolerant subgraphs, directed feedback arc set, directed edge odd cycle transversal, bounded independence number digraphs} }

Document

**Published in:** LIPIcs, Volume 144, 27th Annual European Symposium on Algorithms (ESA 2019)

An undirected graph G is d-degenerate if every subgraph of G has a vertex of degree at most d. By the classical theorem of Erdős and Gallai from 1959, every graph of degeneracy d>1 contains a cycle of length at least d+1. The proof of Erdős and Gallai is constructive and can be turned into a polynomial time algorithm constructing a cycle of length at least d+1. But can we decide in polynomial time whether a graph contains a cycle of length at least d+2? An easy reduction from Hamiltonian Cycle provides a negative answer to this question: Deciding whether a graph has a cycle of length at least d+2 is NP-complete. Surprisingly, the complexity of the problem changes drastically when the input graph is 2-connected. In this case we prove that deciding whether G contains a cycle of length at least d+k can be done in time 2^{O(k)}|V(G)|^O(1). In other words, deciding whether a 2-connected n-vertex G contains a cycle of length at least d+log{n} can be done in polynomial time. Similar algorithmic results hold for long paths in graphs. We observe that deciding whether a graph has a path of length at least d+1 is NP-complete. However, we prove that if graph G is connected, then deciding whether G contains a path of length at least d+k can be done in time 2^{O(k)}n^O(1). We complement these results by showing that the choice of degeneracy as the "above guarantee parameterization" is optimal in the following sense: For any epsilon>0 it is NP-complete to decide whether a connected (2-connected) graph of degeneracy d has a path (cycle) of length at least (1+epsilon)d.

Fedor V. Fomin, Petr A. Golovach, Daniel Lokshtanov, Fahad Panolan, Saket Saurabh, and Meirav Zehavi. Going Far From Degeneracy. In 27th Annual European Symposium on Algorithms (ESA 2019). Leibniz International Proceedings in Informatics (LIPIcs), Volume 144, pp. 47:1-47:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2019)

Copy BibTex To Clipboard

@InProceedings{fomin_et_al:LIPIcs.ESA.2019.47, author = {Fomin, Fedor V. and Golovach, Petr A. and Lokshtanov, Daniel and Panolan, Fahad and Saurabh, Saket and Zehavi, Meirav}, title = {{Going Far From Degeneracy}}, booktitle = {27th Annual European Symposium on Algorithms (ESA 2019)}, pages = {47:1--47:14}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-124-5}, ISSN = {1868-8969}, year = {2019}, volume = {144}, editor = {Bender, Michael A. and Svensson, Ola and Herman, Grzegorz}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2019.47}, URN = {urn:nbn:de:0030-drops-111688}, doi = {10.4230/LIPIcs.ESA.2019.47}, annote = {Keywords: Longest path, longest cycle, fixed-parameter tractability, above guarantee parameterization} }

Document

**Published in:** LIPIcs, Volume 143, 19th International Workshop on Algorithms in Bioinformatics (WABI 2019)

An important goal in microbial computational genomics is to identify crucial events in the evolution of a gene that severely alter the duplication, loss and mobilization patterns of the gene within the genomes in which it disseminates. In this paper, we formalize this microbiological goal as a new pattern-matching problem in the domain of Gene tree and Species tree reconciliation, denoted "Reconciliation-Scenario Altering Mutation (RSAM) Discovery". We propose an O(m * n * k) time algorithm to solve this new problem, where m and n are the number of vertices of the input Gene tree and Species tree, respectively, and k is a user-specified parameter that bounds from above the number of optimal solutions of interest. The algorithm first constructs a hypergraph representing the k highest scoring reconciliation scenarios between the given Gene tree and Species tree, and then interrogates this hypergraph for subtrees matching a pre-specified RSAM Pattern. Our algorithm is optimal in the sense that the number of hypernodes in the hypergraph can be lower bounded by Omega(m * n * k). We implement the new algorithm as a tool, denoted RSAM-finder, and demonstrate its application to the identification of RSAMs in toxins and drug resistance elements across a dataset spanning hundreds of species.

Roni Zoller, Meirav Zehavi, and Michal Ziv-Ukelson. A New Paradigm for Identifying Reconciliation-Scenario Altering Mutations Conferring Environmental Adaptation. In 19th International Workshop on Algorithms in Bioinformatics (WABI 2019). Leibniz International Proceedings in Informatics (LIPIcs), Volume 143, pp. 9:1-9:13, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2019)

Copy BibTex To Clipboard

@InProceedings{zoller_et_al:LIPIcs.WABI.2019.9, author = {Zoller, Roni and Zehavi, Meirav and Ziv-Ukelson, Michal}, title = {{A New Paradigm for Identifying Reconciliation-Scenario Altering Mutations Conferring Environmental Adaptation}}, booktitle = {19th International Workshop on Algorithms in Bioinformatics (WABI 2019)}, pages = {9:1--9:13}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-123-8}, ISSN = {1868-8969}, year = {2019}, volume = {143}, editor = {Huber, Katharina T. and Gusfield, Dan}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.9}, URN = {urn:nbn:de:0030-drops-110398}, doi = {10.4230/LIPIcs.WABI.2019.9}, annote = {Keywords: Gene tree, Species tree, Reconciliation} }

Document

**Published in:** LIPIcs, Volume 138, 44th International Symposium on Mathematical Foundations of Computer Science (MFCS 2019)

A tournament is a directed graph in which there is a single arc between every pair of distinct vertices. Given a tournament T on n vertices, we explore the classical and parameterized complexity of the problems of determining if T has a cycle packing (a set of pairwise arc-disjoint cycles) of size k and a triangle packing (a set of pairwise arc-disjoint triangles) of size k. We refer to these problems as Arc-disjoint Cycles in Tournaments (ACT) and Arc-disjoint Triangles in Tournaments (ATT), respectively. Although the maximization version of ACT can be seen as the linear programming dual of the well-studied problem of finding a minimum feedback arc set (a set of arcs whose deletion results in an acyclic graph) in tournaments, surprisingly no algorithmic results seem to exist for ACT. We first show that ACT and ATT are both NP-complete. Then, we show that the problem of determining if a tournament has a cycle packing and a feedback arc set of the same size is NP-complete. Next, we prove that ACT and ATT are fixed-parameter tractable, they can be solved in 2^{O(k log k)} n^{O(1)} time and 2^{O(k)} n^{O(1)} time respectively. Moreover, they both admit a kernel with O(k) vertices. We also prove that ACT and ATT cannot be solved in 2^{o(sqrt{k})} n^{O(1)} time under the Exponential-Time Hypothesis.

Stéphane Bessy, Marin Bougeret, R. Krithika, Abhishek Sahu, Saket Saurabh, Jocelyn Thiebaut, and Meirav Zehavi. Packing Arc-Disjoint Cycles in Tournaments. In 44th International Symposium on Mathematical Foundations of Computer Science (MFCS 2019). Leibniz International Proceedings in Informatics (LIPIcs), Volume 138, pp. 27:1-27:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2019)

Copy BibTex To Clipboard

@InProceedings{bessy_et_al:LIPIcs.MFCS.2019.27, author = {Bessy, St\'{e}phane and Bougeret, Marin and Krithika, R. and Sahu, Abhishek and Saurabh, Saket and Thiebaut, Jocelyn and Zehavi, Meirav}, title = {{Packing Arc-Disjoint Cycles in Tournaments}}, booktitle = {44th International Symposium on Mathematical Foundations of Computer Science (MFCS 2019)}, pages = {27:1--27:14}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-117-7}, ISSN = {1868-8969}, year = {2019}, volume = {138}, editor = {Rossmanith, Peter and Heggernes, Pinar and Katoen, Joost-Pieter}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2019.27}, URN = {urn:nbn:de:0030-drops-109714}, doi = {10.4230/LIPIcs.MFCS.2019.27}, annote = {Keywords: arc-disjoint cycle packing, tournaments, parameterized algorithms, kernelization} }

Document

**Published in:** LIPIcs, Volume 138, 44th International Symposium on Mathematical Foundations of Computer Science (MFCS 2019)

Given an n-vertex digraph D and a non-negative integer k, the Minimum Directed Bisection problem asks if the vertices of D can be partitioned into two parts, say L and R, such that |L| and |R| differ by at most 1 and the number of arcs from R to L is at most k. This problem, in general, is W-hard as it is known to be NP-hard even when k=0. We investigate the parameterized complexity of this problem on semicomplete digraphs. We show that Minimum Directed Bisection on semicomplete digraphs is one of a handful of problems that admit sub-exponential time fixed-parameter tractable algorithms. That is, we show that the problem admits a 2^{O(sqrt{k} log k)}n^{O(1)} time algorithm on semicomplete digraphs. We also show that Minimum Directed Bisection admits a polynomial kernel on semicomplete digraphs. To design the kernel, we use (n,k,k^2)-splitters. To the best of our knowledge, this is the first time such pseudorandom objects have been used in the design of kernels. We believe that the framework of designing kernels using splitters could be applied to more problems that admit sub-exponential time algorithms via chromatic coding. To complement the above mentioned results, we prove that Minimum Directed Bisection is NP-hard on semicomplete digraphs, but polynomial time solvable on tournaments.

Jayakrishnan Madathil, Roohani Sharma, and Meirav Zehavi. A Sub-Exponential FPT Algorithm and a Polynomial Kernel for Minimum Directed Bisection on Semicomplete Digraphs. In 44th International Symposium on Mathematical Foundations of Computer Science (MFCS 2019). Leibniz International Proceedings in Informatics (LIPIcs), Volume 138, pp. 28:1-28:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2019)

Copy BibTex To Clipboard

@InProceedings{madathil_et_al:LIPIcs.MFCS.2019.28, author = {Madathil, Jayakrishnan and Sharma, Roohani and Zehavi, Meirav}, title = {{A Sub-Exponential FPT Algorithm and a Polynomial Kernel for Minimum Directed Bisection on Semicomplete Digraphs}}, booktitle = {44th International Symposium on Mathematical Foundations of Computer Science (MFCS 2019)}, pages = {28:1--28:14}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-117-7}, ISSN = {1868-8969}, year = {2019}, volume = {138}, editor = {Rossmanith, Peter and Heggernes, Pinar and Katoen, Joost-Pieter}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2019.28}, URN = {urn:nbn:de:0030-drops-109721}, doi = {10.4230/LIPIcs.MFCS.2019.28}, annote = {Keywords: bisection, semicomplete digraph, tournament, fpt algorithm, chromatic coding, polynomial kernel, splitters} }

Document

Track A: Algorithms, Complexity and Games

**Published in:** LIPIcs, Volume 132, 46th International Colloquium on Automata, Languages, and Programming (ICALP 2019)

A few years ago, Alon et al. [ISMB 2008] gave a simple randomized O((2e)^km epsilon^{-2})-time exponential-space algorithm to approximately compute the number of paths on k vertices in a graph G up to a multiplicative error of 1 +/- epsilon. Shortly afterwards, Alon and Gutner [IWPEC 2009, TALG 2010] gave a deterministic exponential-space algorithm with running time (2e)^{k+O(log^3k)}m log n whenever epsilon^{-1}=k^{O(1)}. Recently, Brand et al. [STOC 2018] provided a speed-up at the cost of reintroducing randomization. Specifically, they gave a randomized O(4^km epsilon^{-2})-time exponential-space algorithm. In this article, we revisit the algorithm by Alon and Gutner. We modify the foundation of their work, and with a novel twist, obtain the following results.
- We present a deterministic 4^{k+O(sqrt{k}(log^2k+log^2 epsilon^{-1}))}m log n-time polynomial-space algorithm. This matches the running time of the best known deterministic polynomial-space algorithm for deciding whether a given graph G has a path on k vertices.
- Additionally, we present a randomized 4^{k+O(log k(log k + log epsilon^{-1}))}m log n-time polynomial-space algorithm. While Brand et al. make non-trivial use of exterior algebra, our algorithm is very simple; we only make elementary use of the probabilistic method.
Thus, the algorithm by Brand et al. runs in time 4^{k+o(k)}m whenever epsilon^{-1}=2^{o(k)}, while our deterministic and randomized algorithms run in time 4^{k+o(k)}m log n whenever epsilon^{-1}=2^{o(k^{1/4})} and epsilon^{-1}=2^{o(k/(log k))}, respectively. Prior to our work, no 2^{O(k)}n^{O(1)}-time polynomial-space algorithm was known. Additionally, our approach is embeddable in the classic framework of divide-and-color, hence it immediately extends to approximate counting of graphs of bounded treewidth; in comparison, Brand et al. note that their approach is limited to graphs of bounded pathwidth.

Andreas Björklund, Daniel Lokshtanov, Saket Saurabh, and Meirav Zehavi. Approximate Counting of k-Paths: Deterministic and in Polynomial Space. In 46th International Colloquium on Automata, Languages, and Programming (ICALP 2019). Leibniz International Proceedings in Informatics (LIPIcs), Volume 132, pp. 24:1-24:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2019)

Copy BibTex To Clipboard

@InProceedings{bjorklund_et_al:LIPIcs.ICALP.2019.24, author = {Bj\"{o}rklund, Andreas and Lokshtanov, Daniel and Saurabh, Saket and Zehavi, Meirav}, title = {{Approximate Counting of k-Paths: Deterministic and in Polynomial Space}}, booktitle = {46th International Colloquium on Automata, Languages, and Programming (ICALP 2019)}, pages = {24:1--24:15}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-109-2}, ISSN = {1868-8969}, year = {2019}, volume = {132}, editor = {Baier, Christel and Chatzigiannakis, Ioannis and Flocchini, Paola and Leonardi, Stefano}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2019.24}, URN = {urn:nbn:de:0030-drops-106001}, doi = {10.4230/LIPIcs.ICALP.2019.24}, annote = {Keywords: parameterized complexity, approximate counting, \{ k\}-Path} }

Document

Track A: Algorithms, Complexity and Games

**Published in:** LIPIcs, Volume 132, 46th International Colloquium on Automata, Languages, and Programming (ICALP 2019)

Perturbed graphic matroids are binary matroids that can be obtained from a graphic matroid by adding a noise of small rank. More precisely, an r-rank perturbed graphic matroid M is a binary matroid that can be represented in the form I +P, where I is the incidence matrix of some graph and P is a binary matrix of rank at most r. Such matroids naturally appear in a number of theoretical and applied settings. The main motivation behind our work is an attempt to understand which parameterized algorithms for various problems on graphs could be lifted to perturbed graphic matroids.
We study the parameterized complexity of a natural generalization (for matroids) of the following fundamental problems on graphs: Steiner Tree and Multiway Cut. In this generalization, called the Space Cover problem, we are given a binary matroid M with a ground set E, a set of terminals T subseteq E, and a non-negative integer k. The task is to decide whether T can be spanned by a subset of E \ T of size at most k.
We prove that on graphic matroid perturbations, for every fixed r, Space Cover is fixed-parameter tractable parameterized by k. On the other hand, the problem becomes W[1]-hard when parameterized by r+k+|T| and it is NP-complete for r <= 2 and |T|<= 2.
On cographic matroids, that are the duals of graphic matroids, Space Cover generalizes another fundamental and well-studied problem, namely Multiway Cut. We show that on the duals of perturbed graphic matroids the Space Cover problem is fixed-parameter tractable parameterized by r+k.

Fedor V. Fomin, Petr A. Golovach, Daniel Lokshtanov, Saket Saurabh, and Meirav Zehavi. Covering Vectors by Spaces in Perturbed Graphic Matroids and Their Duals. In 46th International Colloquium on Automata, Languages, and Programming (ICALP 2019). Leibniz International Proceedings in Informatics (LIPIcs), Volume 132, pp. 59:1-59:13, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2019)

Copy BibTex To Clipboard

@InProceedings{fomin_et_al:LIPIcs.ICALP.2019.59, author = {Fomin, Fedor V. and Golovach, Petr A. and Lokshtanov, Daniel and Saurabh, Saket and Zehavi, Meirav}, title = {{Covering Vectors by Spaces in Perturbed Graphic Matroids and Their Duals}}, booktitle = {46th International Colloquium on Automata, Languages, and Programming (ICALP 2019)}, pages = {59:1--59:13}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-109-2}, ISSN = {1868-8969}, year = {2019}, volume = {132}, editor = {Baier, Christel and Chatzigiannakis, Ioannis and Flocchini, Paola and Leonardi, Stefano}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2019.59}, URN = {urn:nbn:de:0030-drops-106351}, doi = {10.4230/LIPIcs.ICALP.2019.59}, annote = {Keywords: Binary matroids, perturbed graphic matroids, spanning set, parameterized complexity} }

Document

Track A: Algorithms, Complexity and Games

**Published in:** LIPIcs, Volume 132, 46th International Colloquium on Automata, Languages, and Programming (ICALP 2019)

Bidimensionality is the most common technique to design subexponential-time parameterized algorithms on special classes of graphs, particularly planar graphs. The core engine behind it is a combinatorial lemma of Robertson, Seymour and Thomas that states that every planar graph either has a sqrt{k} x sqrt{k}-grid as a minor, or its treewidth is O(sqrt{k}). However, bidimensionality theory cannot be extended directly to several well-known classes of geometric graphs like unit disk or map graphs. This is mainly due to the presence of large cliques in these classes of graphs. Nevertheless, a relaxation of this lemma has been proven useful for unit disk graphs. Inspired by this, we prove a new decomposition lemma for map graphs, the intersection graphs of finitely many simply-connected and interior-disjoint regions of the Euclidean plane. Informally, our lemma states the following. For any map graph G, there exists a collection (U_1,...,U_t) of cliques of G with the following property: G either contains a sqrt{k} x sqrt{k}-grid as a minor, or it admits a tree decomposition where every bag is the union of O(sqrt{k}) cliques in the above collection.
The new lemma appears to be a handy tool in the design of subexponential parameterized algorithms on map graphs. We demonstrate its usability by designing algorithms on map graphs with running time 2^{O({sqrt{k}log{k}})} * n^{O(1)} for Connected Planar F-Deletion (that encompasses problems such as Feedback Vertex Set and Vertex Cover). Obtaining subexponential algorithms for Longest Cycle/Path and Cycle Packing is more challenging. We have to construct tree decompositions with more powerful properties and to prove sublinear bounds on the number of ways an optimum solution could "cross" bags in these decompositions.
For Longest Cycle/Path, these are the first subexponential-time parameterized algorithm on map graphs. For Feedback Vertex Set and Cycle Packing, we improve upon known 2^{O({k^{0.75}log{k}})} * n^{O(1)}-time algorithms on map graphs.

Fedor V. Fomin, Daniel Lokshtanov, Fahad Panolan, Saket Saurabh, and Meirav Zehavi. Decomposition of Map Graphs with Applications. In 46th International Colloquium on Automata, Languages, and Programming (ICALP 2019). Leibniz International Proceedings in Informatics (LIPIcs), Volume 132, pp. 60:1-60:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2019)

Copy BibTex To Clipboard

@InProceedings{fomin_et_al:LIPIcs.ICALP.2019.60, author = {Fomin, Fedor V. and Lokshtanov, Daniel and Panolan, Fahad and Saurabh, Saket and Zehavi, Meirav}, title = {{Decomposition of Map Graphs with Applications}}, booktitle = {46th International Colloquium on Automata, Languages, and Programming (ICALP 2019)}, pages = {60:1--60:15}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-109-2}, ISSN = {1868-8969}, year = {2019}, volume = {132}, editor = {Baier, Christel and Chatzigiannakis, Ioannis and Flocchini, Paola and Leonardi, Stefano}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2019.60}, URN = {urn:nbn:de:0030-drops-106366}, doi = {10.4230/LIPIcs.ICALP.2019.60}, annote = {Keywords: Longest Cycle, Cycle Packing, Feedback Vertex Set, Map Graphs, FPT} }

Document

**Published in:** Dagstuhl Reports, Volume 9, Issue 1 (2019)

This report documents the program and the outcomes of Dagstuhl Seminar 19041 "New Horizons in Parameterized Complexity".
Parameterized Complexity is celebrating its 30th birthday in 2019. In these three decades, there has been tremendous progress in developing the area. The central vision of Parameterized Complexity through all these years has been to provide the algorithmic and complexity-theoretic toolkit for studying multivariate algorithmics in different disciplines and subfields of Computer Science. These tools are universal as they did not only help in the development of the core of Parameterized Complexity, but also led to its success in other subfields of Computer Science such as Approximation Algorithms, Computational Social Choice, Computational Geometry, problems solvable in P (polynomial time), to name a few.
In the last few years, we have witnessed several exciting developments of new parameterized techniques and tools in the following subfields of Computer Science and Optimization: Mathematical Programming, Computational Linear Algebra, Computational Counting, Derandomization, and Approximation Algorithms.
The main objective of the seminar was to initiate the discussion on which of the recent
domain-specific algorithms and complexity advances can become useful in other domains.

Fedor V. Fomin, Dániel Marx, Saket Saurabh, and Meirav Zehavi. New Horizons in Parameterized Complexity (Dagstuhl Seminar 19041). In Dagstuhl Reports, Volume 9, Issue 1, pp. 67-87, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2019)

Copy BibTex To Clipboard

@Article{fomin_et_al:DagRep.9.1.67, author = {Fomin, Fedor V. and Marx, D\'{a}niel and Saurabh, Saket and Zehavi, Meirav}, title = {{New Horizons in Parameterized Complexity (Dagstuhl Seminar 19041)}}, pages = {67--87}, journal = {Dagstuhl Reports}, ISSN = {2192-5283}, year = {2019}, volume = {9}, number = {1}, editor = {Fomin, Fedor V. and Marx, D\'{a}niel and Saurabh, Saket and Zehavi, Meirav}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/DagRep.9.1.67}, URN = {urn:nbn:de:0030-drops-105706}, doi = {10.4230/DagRep.9.1.67}, annote = {Keywords: Intractability, Parameterized Complexity} }

Document

**Published in:** LIPIcs, Volume 129, 35th International Symposium on Computational Geometry (SoCG 2019)

We study a prototype Crossing Minimization problem, defined as follows. Let F be an infinite family of (possibly vertex-labeled) graphs. Then, given a set P of (possibly labeled) n points in the Euclidean plane, a collection L subseteq Lines(P)={l: l is a line segment with both endpoints in P}, and a non-negative integer k, decide if there is a subcollection L'subseteq L such that the graph G=(P,L') is isomorphic to a graph in F and L' has at most k crossings. By G=(P,L'), we refer to the graph on vertex set P, where two vertices are adjacent if and only if there is a line segment that connects them in L'. Intuitively, in Crossing Minimization, we have a set of locations of interest, and we want to build/draw/exhibit connections between them (where L indicates where it is feasible to have these connections) so that we obtain a structure in F. Natural choices for F are the collections of perfect matchings, Hamiltonian paths, and graphs that contain an (s,t)-path (a path whose endpoints are labeled). While the objective of seeking a solution with few crossings is of interest from a theoretical point of view, it is also well motivated by a wide range of practical considerations. For example, links/roads (such as highways) may be cheaper to build and faster to traverse, and signals/moving objects would collide/interrupt each other less often. Further, graphs with fewer crossings are preferred for graphic user interfaces.
As a starting point for a systematic study, we consider a special case of Crossing Minimization. Already for this case, we obtain NP-hardness and W[1]-hardness results, and ETH-based lower bounds. Specifically, suppose that the input also contains a collection D of d non-crossing line segments such that each point in P belongs to exactly one line in D, and L does not contain line segments between points on the same line in D. Clearly, Crossing Minimization is the case where d=n - then, P is in general position. The case of d=2 is of interest not only because it is the most restricted non-trivial case, but also since it corresponds to a class of graphs that has been well studied - specifically, it is Crossing Minimization where G=(P,L) is a (bipartite) graph with a so called two-layer drawing. For d=2, we consider three basic choices of F. For perfect matchings, we show (i) NP-hardness with an ETH-based lower bound, (ii) solvability in subexponential parameterized time, and (iii) existence of an O(k^2)-vertex kernel. Second, for Hamiltonian paths, we show (i) solvability in subexponential parameterized time, and (ii) existence of an O(k^2)-vertex kernel. Lastly, for graphs that contain an (s,t)-path, we show (i) NP-hardness and W[1]-hardness, and (ii) membership in XP.

Akanksha Agrawal, Grzegorz Guśpiel, Jayakrishnan Madathil, Saket Saurabh, and Meirav Zehavi. Connecting the Dots (with Minimum Crossings). In 35th International Symposium on Computational Geometry (SoCG 2019). Leibniz International Proceedings in Informatics (LIPIcs), Volume 129, pp. 7:1-7:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2019)

Copy BibTex To Clipboard

@InProceedings{agrawal_et_al:LIPIcs.SoCG.2019.7, author = {Agrawal, Akanksha and Gu\'{s}piel, Grzegorz and Madathil, Jayakrishnan and Saurabh, Saket and Zehavi, Meirav}, title = {{Connecting the Dots (with Minimum Crossings)}}, booktitle = {35th International Symposium on Computational Geometry (SoCG 2019)}, pages = {7:1--7:17}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-104-7}, ISSN = {1868-8969}, year = {2019}, volume = {129}, editor = {Barequet, Gill and Wang, Yusu}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2019.7}, URN = {urn:nbn:de:0030-drops-104117}, doi = {10.4230/LIPIcs.SoCG.2019.7}, annote = {Keywords: crossing minimization, parameterized complexity, FPT algorithm, polynomial kernel, W\lbrack1\rbrack-hardness} }

Document

**Published in:** LIPIcs, Volume 115, 13th International Symposium on Parameterized and Exact Computation (IPEC 2018)

Hubs are high-degree nodes within a network. The examination of the emergence and centrality of hubs lies at the heart of many studies of complex networks such as telecommunication networks, biological networks, social networks and semantic networks. Furthermore, identifying and allocating hubs are routine tasks in applications. In this paper, we do not seek a hub that is a single node, but a hub that consists of k nodes. Formally, given a graph G=(V,E), we a seek a set A subseteq V of size k that induces a connected subgraph from which at least p edges emanate. Thus, we identify k nodes which can act as a unit (due to the connectivity constraint) that is a hub (due to the cut constraint). This problem, which we call Multi-Node Hub (MNH), can also be viewed as a variant of the classic Max Cut problem. While it is easy to see that MNH is W[1]-hard with respect to the parameter k, our main contribution is the first parameterized algorithm that shows that MNH is FPT with respect to the parameter p.
Despite recent breakthrough advances for cut-problems like Multicut and Minimum Bisection, MNH is still very challenging. Not only does a connectivity constraint has to be handled on top of the involved machinery developed for these problems, but also the fact that MNH is a maximization problem seems to prevent the applicability of this machinery in the first place. To deal with the latter issue, we give non-trivial reduction rules that show how MNH can be preprocessed into a problem where it is necessary to delete a bounded-in-parameter number of vertices. Then, to handle the connectivity constraint, we use a novel application of the form of tree decomposition introduced by Cygan et al. [STOC 2014] to solve Minimum Bisection, where we demonstrate how connectivity constraints can be replaced by simpler size constraints. Our approach may be relevant to the design of algorithms for other cut-problems of this nature.

Saket Saurabh and Meirav Zehavi. Parameterized Complexity of Multi-Node Hubs. In 13th International Symposium on Parameterized and Exact Computation (IPEC 2018). Leibniz International Proceedings in Informatics (LIPIcs), Volume 115, pp. 8:1-8:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2019)

Copy BibTex To Clipboard

@InProceedings{saurabh_et_al:LIPIcs.IPEC.2018.8, author = {Saurabh, Saket and Zehavi, Meirav}, title = {{Parameterized Complexity of Multi-Node Hubs}}, booktitle = {13th International Symposium on Parameterized and Exact Computation (IPEC 2018)}, pages = {8:1--8:14}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-084-2}, ISSN = {1868-8969}, year = {2019}, volume = {115}, editor = {Paul, Christophe and Pilipczuk, Michal}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.IPEC.2018.8}, URN = {urn:nbn:de:0030-drops-102090}, doi = {10.4230/LIPIcs.IPEC.2018.8}, annote = {Keywords: hub, bisection, tree decomposition} }

Document

**Published in:** LIPIcs, Volume 122, 38th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2018)

Fradkin and Seymour [Journal of Combinatorial Graph Theory, Series B, 2015] defined the class of digraphs of bounded independence number as a generalization of the class of tournaments. They argued that the class of digraphs of bounded independence number is structured enough to be exploited algorithmically. In this paper, we further strengthen this belief by showing that several cut problems that admit sub-exponential time parameterized algorithms (a trait uncommon to parameterized algorithms) on tournaments, including Directed Feedback Arc Set, Directed Cutwidth and Optimal Linear Arrangement, also admit such algorithms on digraphs of bounded independence number. Towards this, we rely on the generic approach of Fomin and Pilipczuk [ESA, 2013], where to get the desired algorithms, it is enough to bound the number of k-cuts in digraphs of bounded independence number by a sub-exponential FPT function (Fomin and Pilipczuk bounded the number of k-cuts in transitive tournaments). Specifically, our main technical contribution is that the yes-instances of the problems above have a sub-exponential number of k-cuts. We prove this bound by using a combination of chromatic coding, an inductive argument and structural properties of the digraphs.

Pranabendu Misra, Saket Saurabh, Roohani Sharma, and Meirav Zehavi. Sub-Exponential Time Parameterized Algorithms for Graph Layout Problems on Digraphs with Bounded Independence Number. In 38th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2018). Leibniz International Proceedings in Informatics (LIPIcs), Volume 122, pp. 35:1-35:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2018)

Copy BibTex To Clipboard

@InProceedings{misra_et_al:LIPIcs.FSTTCS.2018.35, author = {Misra, Pranabendu and Saurabh, Saket and Sharma, Roohani and Zehavi, Meirav}, title = {{Sub-Exponential Time Parameterized Algorithms for Graph Layout Problems on Digraphs with Bounded Independence Number}}, booktitle = {38th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2018)}, pages = {35:1--35:19}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-093-4}, ISSN = {1868-8969}, year = {2018}, volume = {122}, editor = {Ganguly, Sumit and Pandya, Paritosh}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.FSTTCS.2018.35}, URN = {urn:nbn:de:0030-drops-99341}, doi = {10.4230/LIPIcs.FSTTCS.2018.35}, annote = {Keywords: sub-exponential fixed-parameter tractable algorithms, directed feedback arc set, directed cutwidth, optimal linear arrangement, bounded independence number digraph} }

Document

**Published in:** LIPIcs, Volume 116, Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2018)

Let F be a family of graphs. A canonical vertex deletion problem corresponding to F is defined as follows: given an n-vertex undirected graph G and a weight function w: V(G) - >R^+, find a minimum weight subset S subseteq V(G) such that G-S belongs to F. This is known as Weighted F Vertex Deletion problem. In this paper we devise a recursive scheme to obtain O(log^{O(1)} n)-approximation algorithms for such problems, building upon the classical technique of finding balanced separators in a graph. Roughly speaking, our scheme applies to those problems, where an optimum solution S together with a well-structured set X, form a balanced separator of the input graph. In this paper, we obtain the first O(log^{O(1)} n)-approximation algorithms for the following vertex deletion problems.
- Let {F} be a finite set of graphs containing a planar graph, and F=G(F) be the family of graphs such that every graph H in G(F) excludes all graphs in F as minors. The vertex deletion problem corresponding to F=G(F) is the Weighted Planar F-Minor-Free Deletion (WPF-MFD) problem. We give randomized and deterministic approximation algorithms for WPF-MFD with ratios O(log^{1.5} n) and O(log^2 n), respectively. Previously, only a randomized constant factor approximation algorithm for the unweighted version of the problem was known [FOCS 2012].
- We give an O(log^2 n)-factor approximation algorithm for Weighted Chordal Vertex Deletion (WCVD), the vertex deletion problem to the family of chordal graphs. On the way to this algorithm, we also obtain a constant factor approximation algorithm for Multicut on chordal graphs.
- We give an O(log^3 n)-factor approximation algorithm for Weighted Distance Hereditary Vertex Deletion (WDHVD), also known as Weighted Rankwidth-1 Vertex Deletion (WR-1VD). This is the vertex deletion problem to the family of distance hereditary graphs, or equivalently, the family of graphs of rankwidth one.
We believe that our recursive scheme can be applied to obtain O(log^{O(1)} n)-approximation algorithms for many other problems as well.

Akanksha Agrawal, Daniel Lokshtanov, Pranabendu Misra, Saket Saurabh, and Meirav Zehavi. Polylogarithmic Approximation Algorithms for Weighted-F-Deletion Problems. In Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2018). Leibniz International Proceedings in Informatics (LIPIcs), Volume 116, pp. 1:1-1:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2018)

Copy BibTex To Clipboard

@InProceedings{agrawal_et_al:LIPIcs.APPROX-RANDOM.2018.1, author = {Agrawal, Akanksha and Lokshtanov, Daniel and Misra, Pranabendu and Saurabh, Saket and Zehavi, Meirav}, title = {{Polylogarithmic Approximation Algorithms for Weighted-F-Deletion Problems}}, booktitle = {Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2018)}, pages = {1:1--1:15}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-085-9}, ISSN = {1868-8969}, year = {2018}, volume = {116}, editor = {Blais, Eric and Jansen, Klaus and D. P. Rolim, Jos\'{e} and Steurer, David}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.APPROX-RANDOM.2018.1}, URN = {urn:nbn:de:0030-drops-94058}, doi = {10.4230/LIPIcs.APPROX-RANDOM.2018.1}, annote = {Keywords: Approximation Algorithms, Planar- F-Deletion, Separator} }

Document

Brief Announcement

**Published in:** LIPIcs, Volume 107, 45th International Colloquium on Automata, Languages, and Programming (ICALP 2018)

In the Directed Feedback Vertex Set (DFVS) problem, we are given as input a directed graph D and an integer k, and the objective is to check whether there exists a set S of at most k vertices such that F=D-S is a directed acyclic graph (DAG). Determining whether DFVS admits a polynomial kernel (parameterized by the solution size) is one of the most important open problems in parameterized complexity. In this article, we give a polynomial kernel for DFVS parameterized by the solution size plus the size of any treewidth-eta modulator, for any positive integer eta. We also give a polynomial kernel for the problem, which we call Vertex Deletion to treewidth-eta DAG, where given as input a directed graph D and a positive integer k, the objective is to decide whether there exists a set of at most k vertices, say S, such that D-S is a DAG and the treewidth of D-S is at most eta.

Daniel Lokshtanov, M. S. Ramanujan, Saket Saurabh, Roohani Sharma, and Meirav Zehavi. Brief Announcement: Treewidth Modulator: Emergency Exit for DFVS. In 45th International Colloquium on Automata, Languages, and Programming (ICALP 2018). Leibniz International Proceedings in Informatics (LIPIcs), Volume 107, pp. 110:1-110:4, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2018)

Copy BibTex To Clipboard

@InProceedings{lokshtanov_et_al:LIPIcs.ICALP.2018.110, author = {Lokshtanov, Daniel and Ramanujan, M. S. and Saurabh, Saket and Sharma, Roohani and Zehavi, Meirav}, title = {{Brief Announcement: Treewidth Modulator: Emergency Exit for DFVS}}, booktitle = {45th International Colloquium on Automata, Languages, and Programming (ICALP 2018)}, pages = {110:1--110:4}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-076-7}, ISSN = {1868-8969}, year = {2018}, volume = {107}, editor = {Chatzigiannakis, Ioannis and Kaklamanis, Christos and Marx, D\'{a}niel and Sannella, Donald}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2018.110}, URN = {urn:nbn:de:0030-drops-91146}, doi = {10.4230/LIPIcs.ICALP.2018.110}, annote = {Keywords: Polynomial Kernel, Directed Feedback Vertex Set, Treewidth Modulator} }

Document

**Published in:** LIPIcs, Volume 107, 45th International Colloquium on Automata, Languages, and Programming (ICALP 2018)

Given a Counting Monadic Second Order (CMSO) sentence psi, the CMSO[psi] problem is defined as follows. The input to CMSO[psi] is a graph G, and the objective is to determine whether G |= psi. Our main theorem states that for every CMSO sentence psi, if CMSO[psi] is solvable in polynomial time on "globally highly connected graphs", then CMSO[psi] is solvable in polynomial time (on general graphs). We demonstrate the utility of our theorem in the design of parameterized algorithms. Specifically we show that technical problem-specific ingredients of a powerful method for designing parameterized algorithms, recursive understanding, can be replaced by a black-box invocation of our main theorem. We also show that our theorem can be easily deployed to show fixed parameterized tractability of a wide range of problems, where the input is a graph G and the task is to find a connected induced subgraph of G such that "few" vertices in this subgraph have neighbors outside the subgraph, and additionally the subgraph has a CMSO-definable property.

Daniel Lokshtanov, M. S. Ramanujan, Saket Saurabh, and Meirav Zehavi. Reducing CMSO Model Checking to Highly Connected Graphs. In 45th International Colloquium on Automata, Languages, and Programming (ICALP 2018). Leibniz International Proceedings in Informatics (LIPIcs), Volume 107, pp. 135:1-135:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2018)

Copy BibTex To Clipboard

@InProceedings{lokshtanov_et_al:LIPIcs.ICALP.2018.135, author = {Lokshtanov, Daniel and Ramanujan, M. S. and Saurabh, Saket and Zehavi, Meirav}, title = {{Reducing CMSO Model Checking to Highly Connected Graphs}}, booktitle = {45th International Colloquium on Automata, Languages, and Programming (ICALP 2018)}, pages = {135:1--135:14}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-076-7}, ISSN = {1868-8969}, year = {2018}, volume = {107}, editor = {Chatzigiannakis, Ioannis and Kaklamanis, Christos and Marx, D\'{a}niel and Sannella, Donald}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2018.135}, URN = {urn:nbn:de:0030-drops-91391}, doi = {10.4230/LIPIcs.ICALP.2018.135}, annote = {Keywords: Fixed Parameter Tractability Model Checking Recursive Understanding} }

Document

**Published in:** LIPIcs, Volume 96, 35th Symposium on Theoretical Aspects of Computer Science (STACS 2018)

The duality between packing and covering problems lies at the heart of fundamental combinatorial proofs, as well as well-known algorithmic methods such as the primal-dual method for approximation and win/win-approach for parameterized analysis. The very essence of this duality is encompassed by a well-known property called the Erdös-Pósa property, which has been extensively studied for over five decades. Informally, we say that a class of graphs F admits the Erdös-Pósa property if there exists f such that for any graph G, either G has vertex-disjoint "copies" of the graphs in F, or there is a set S \subseteq V(G) of f(k) vertices that intersects all copies of the graphs in F. In the context of any graph class G, the most natural question that arises in this regard is as follows - do obstructions to G have the Erdös-Pósa property? Having this view in mind, we focus on the class of interval graphs. Structural properties of interval graphs are intensively studied, also as they lead to the design of polynomial-time algorithms for classic problems that are NP-hard on general graphs. Nevertheless, about one of the most basic properties of such graphs, namely, the Erdös-Pósa property, nothing is known. In this paper, we settle this anomaly: we prove that the family of obstructions to interval graphs - namely, the family of chordless cycles and ATs---admits the Erdös-Pósa property. Our main theorem immediately results in an algorithm to decide whether an input graph G has vertex-disjoint ATs and chordless cycles, or there exists a set of O(k^2 log k) vertices in G that hits all ATs and chordless cycles.

Akanksha Agrawal, Daniel Lokshtanov, Pranabendu Misra, Saket Saurabh, and Meirav Zehavi. Erdös-Pósa Property of Obstructions to Interval Graphs. In 35th Symposium on Theoretical Aspects of Computer Science (STACS 2018). Leibniz International Proceedings in Informatics (LIPIcs), Volume 96, pp. 7:1-7:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2018)

Copy BibTex To Clipboard

@InProceedings{agrawal_et_al:LIPIcs.STACS.2018.7, author = {Agrawal, Akanksha and Lokshtanov, Daniel and Misra, Pranabendu and Saurabh, Saket and Zehavi, Meirav}, title = {{Erd\"{o}s-P\'{o}sa Property of Obstructions to Interval Graphs}}, booktitle = {35th Symposium on Theoretical Aspects of Computer Science (STACS 2018)}, pages = {7:1--7:15}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-062-0}, ISSN = {1868-8969}, year = {2018}, volume = {96}, editor = {Niedermeier, Rolf and Vall\'{e}e, Brigitte}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.STACS.2018.7}, URN = {urn:nbn:de:0030-drops-84815}, doi = {10.4230/LIPIcs.STACS.2018.7}, annote = {Keywords: Interval Graphs, Obstructions, Erd\"{o}s-P\'{o}sa Property} }

Document

**Published in:** LIPIcs, Volume 93, 37th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2017)

The family of judicious partitioning problems, introduced by Bollob\'as and Scott to the field of extremal combinatorics, has been extensively studied from a structural point of view for over two decades. This rich realm of problems aims to counterbalance the objectives of classical partitioning problems such as Min Cut, Min Bisection and Max Cut. While these classical problems focus solely on the minimization/maximization of the number of edges crossing the cut, judicious (bi)partitioning problems ask the natural question of the minimization/maximization of the number of edges lying in the (two) sides of the cut. In particular, Judicious Bipartition (JB) seeks a bipartition that is "judicious" in the sense that neither side is burdened by too many edges, and Balanced JB also requires that the sizes of the sides themselves are "balanced" in the sense that neither of them is too large. Both of these problems were defined in the work by Bollob\'as and Scott, and have received notable scientific attention since then. In this paper, we shed light on the study of judicious partitioning problems from the viewpoint of algorithm design. Specifically, we prove that BJB is FPT (which also proves that JB is FPT).

Daniel Lokshtanov, Saket Saurabh, Roohani Sharma, and Meirav Zehavi. Balanced Judicious Bipartition is Fixed-Parameter Tractable. In 37th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2017). Leibniz International Proceedings in Informatics (LIPIcs), Volume 93, pp. 40:1-40:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2018)

Copy BibTex To Clipboard

@InProceedings{lokshtanov_et_al:LIPIcs.FSTTCS.2017.40, author = {Lokshtanov, Daniel and Saurabh, Saket and Sharma, Roohani and Zehavi, Meirav}, title = {{Balanced Judicious Bipartition is Fixed-Parameter Tractable}}, booktitle = {37th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2017)}, pages = {40:1--40:15}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-055-2}, ISSN = {1868-8969}, year = {2018}, volume = {93}, editor = {Lokam, Satya and Ramanujam, R.}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.FSTTCS.2017.40}, URN = {urn:nbn:de:0030-drops-84115}, doi = {10.4230/LIPIcs.FSTTCS.2017.40}, annote = {Keywords: Judicious Partition, Tree Decomposition, Parameterized Complexity, Odd Cycle Transversal, Minimum Bisection} }

Document

**Published in:** LIPIcs, Volume 94, 9th Innovations in Theoretical Computer Science Conference (ITCS 2018)

Deterministic polynomial-time computation of a representation of a transversal matroid is a longstanding open problem. We present a deterministic computation of a so-called union representation of a transversal matroid in time quasipolynomial in the rank of the matroid. More precisely, we output a collection of linear matroids such that a set is independent in the transversal matroid if and only if it is independent in at least one of them. Our proof directly implies that if one is interested in preserving independent sets of size at most r, for a given r\in\mathbb{N}, but does not care whether larger independent sets are preserved, then a union representation can be computed deterministically in time quasipolynomial in r. This consequence is of independent interest, and sheds light on the power of union~representation.
Our main result also has applications in Parameterized Complexity. First, it yields a fast computation of representative sets, and due to our relaxation in the context of r, this computation also extends to (standard) truncations. In turn, this computation enables to efficiently solve various problems, such as subcases of subgraph isomorphism, motif search and packing problems, in the presence of color lists. Such problems have been studied to model scenarios where pairs of elements to be matched may not be identical but only similar, and color lists aim to describe the set of compatible elements associated with each element.

Daniel Lokshtanov, Pranabendu Misra, Fahad Panolan, Saket Saurabh, and Meirav Zehavi. Quasipolynomial Representation of Transversal Matroids with Applications in Parameterized Complexity. In 9th Innovations in Theoretical Computer Science Conference (ITCS 2018). Leibniz International Proceedings in Informatics (LIPIcs), Volume 94, pp. 32:1-32:13, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2018)

Copy BibTex To Clipboard

@InProceedings{lokshtanov_et_al:LIPIcs.ITCS.2018.32, author = {Lokshtanov, Daniel and Misra, Pranabendu and Panolan, Fahad and Saurabh, Saket and Zehavi, Meirav}, title = {{Quasipolynomial Representation of Transversal Matroids with Applications in Parameterized Complexity}}, booktitle = {9th Innovations in Theoretical Computer Science Conference (ITCS 2018)}, pages = {32:1--32:13}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-060-6}, ISSN = {1868-8969}, year = {2018}, volume = {94}, editor = {Karlin, Anna R.}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ITCS.2018.32}, URN = {urn:nbn:de:0030-drops-83144}, doi = {10.4230/LIPIcs.ITCS.2018.32}, annote = {Keywords: travserval matroid, matroid representation, union representation, representative set} }

Document

**Published in:** LIPIcs, Volume 83, 42nd International Symposium on Mathematical Foundations of Computer Science (MFCS 2017)

In this paper, we study the NP-complete colorful variant of the classical Matching problem, namely, the Rainbow Matching problem. Given an edge-colored graph G and a positive integer k, this problem asks whether there exists a matching of size at least k such that all the edges in the matching have distinct colors. We first develop a deterministic algorithm that solves Rainbow Matching on paths in time O*(((1+\sqrt{5})/2)^k) and polynomial space. This algorithm is based on a curious combination of the method of bounded search trees and a "divide-and-conquer-like" approach, where the branching process is guided by the maintenance of an auxiliary bipartite graph where one side captures "divided-and-conquered" pieces of the path. Our second result is a randomized algorithm that solves Rainbow Matching on general graphs in time O*(2^k) and polynomial space. Here, we show how a result by Björklund et al. [JCSS, 2017] can be invoked as a black box, wrapped by a probability-based analysis tailored to our problem. We also complement our two main results by designing kernels for Rainbow Matching on general and bounded-degree graphs.

Sushmita Gupta, Sanjukta Roy, Saket Saurabh, and Meirav Zehavi. Parameterized Algorithms and Kernels for Rainbow Matching. In 42nd International Symposium on Mathematical Foundations of Computer Science (MFCS 2017). Leibniz International Proceedings in Informatics (LIPIcs), Volume 83, pp. 71:1-71:13, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2017)

Copy BibTex To Clipboard

@InProceedings{gupta_et_al:LIPIcs.MFCS.2017.71, author = {Gupta, Sushmita and Roy, Sanjukta and Saurabh, Saket and Zehavi, Meirav}, title = {{Parameterized Algorithms and Kernels for Rainbow Matching}}, booktitle = {42nd International Symposium on Mathematical Foundations of Computer Science (MFCS 2017)}, pages = {71:1--71:13}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-046-0}, ISSN = {1868-8969}, year = {2017}, volume = {83}, editor = {Larsen, Kim G. and Bodlaender, Hans L. and Raskin, Jean-Francois}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2017.71}, URN = {urn:nbn:de:0030-drops-81245}, doi = {10.4230/LIPIcs.MFCS.2017.71}, annote = {Keywords: Rainbow Matching, Parameterized Algorithm, Bounded Search Trees, Divide-and-Conquer, 3-Set Packing, 3-Dimensional Matching} }

Document

**Published in:** LIPIcs, Volume 80, 44th International Colloquium on Automata, Languages, and Programming (ICALP 2017)

We give algorithms with running time 2^{O({\sqrt{k}\log{k}})} n^{O(1)} for the following problems. Given an n-vertex unit disk graph G and an integer k, decide whether G contains (i) a path on exactly/at least k vertices, (ii) a cycle on exactly k vertices, (iii) a cycle on at least k vertices, (iv) a feedback vertex set of size at most k, and (v) a set of k pairwise vertex disjoint cycles.
For the first three problems, no subexponential time parameterized algorithms were previously known. For the remaining two problems, our algorithms significantly outperform the previously best known parameterized algorithms that run in time 2^{O(k^{0.75}\log{k})} n^{O(1)}. Our algorithms are based on a new kind of tree decompositions of unit disk graphs where the separators can have size up to k^{O(1)} and there exists a solution that crosses every separator at most O(\sqrt{k}) times. The running times of our algorithms are optimal up to the log{k} factor in the exponent, assuming the Exponential Time Hypothesis.

Fedor V. Fomin, Daniel Lokshtanov, Fahad Panolan, Saket Saurabh, and Meirav Zehavi. Finding, Hitting and Packing Cycles in Subexponential Time on Unit Disk Graphs. In 44th International Colloquium on Automata, Languages, and Programming (ICALP 2017). Leibniz International Proceedings in Informatics (LIPIcs), Volume 80, pp. 65:1-65:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2017)

Copy BibTex To Clipboard

@InProceedings{fomin_et_al:LIPIcs.ICALP.2017.65, author = {Fomin, Fedor V. and Lokshtanov, Daniel and Panolan, Fahad and Saurabh, Saket and Zehavi, Meirav}, title = {{Finding, Hitting and Packing Cycles in Subexponential Time on Unit Disk Graphs}}, booktitle = {44th International Colloquium on Automata, Languages, and Programming (ICALP 2017)}, pages = {65:1--65:15}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-041-5}, ISSN = {1868-8969}, year = {2017}, volume = {80}, editor = {Chatzigiannakis, Ioannis and Indyk, Piotr and Kuhn, Fabian and Muscholl, Anca}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2017.65}, URN = {urn:nbn:de:0030-drops-73937}, doi = {10.4230/LIPIcs.ICALP.2017.65}, annote = {Keywords: Longest Cycle, Cycle Packing, Feedback Vertex Set, Unit Disk Graph, Parameterized Complexity} }

Document

**Published in:** LIPIcs, Volume 80, 44th International Colloquium on Automata, Languages, and Programming (ICALP 2017)

The Cycle Packing problem asks whether a given undirected graph G=(V,E) contains k vertex-disjoint cycles. Since the publication of the classic Erdos-Posa theorem in 1965, this problem received significant scientific attention in the fields of Graph Theory and Algorithm Design. In particular, this problem is one of the first problems studied in the framework of Parameterized Complexity. The non-uniform fixed-parameter tractability of Cycle Packing follows from the Robertson–Seymour theorem, a fact already observed by Fellows and Langston in the 1980s. In 1994, Bodlaender showed that Cycle Packing can be solved in time 2^{O(k^2)}|V| using exponential space. In case a solution exists, Bodlaender's algorithm also outputs a solution (in the same time). It has later become common knowledge that Cycle Packing admits a 2^{O(k\log^2 k)}|V|-time (deterministic) algorithm using exponential space, which is a consequence of the Erdos-Posa theorem. Nowadays, the design of this algorithm is given as an exercise in textbooks on Parameterized Complexity. Yet, no algorithm that runs in time 2^{o(k\log^2k)}|V|^{O(1)}, beating the bound 2^{O(k\log^2k)}\cdot |V|^{O(1)}, has been found. In light of this, it seems natural to ask whether the 2^{O(k\log^2k)}|V|^{O(1)}$ bound is essentially optimal. In this paper, we answer this question negatively by developing a 2^{O(k\log^2k/log log k})} |V|-time (deterministic) algorithm for Cycle Packing. In case a solution exists, our algorithm also outputs a solution (in the same time). Moreover, apart from beating the known bound, our algorithm runs in time linear in |V|, and its space complexity is polynomial in the input size.

Daniel Lokshtanov, Amer E. Mouawad, Saket Saurabh, and Meirav Zehavi. Packing Cycles Faster Than Erdos-Posa. In 44th International Colloquium on Automata, Languages, and Programming (ICALP 2017). Leibniz International Proceedings in Informatics (LIPIcs), Volume 80, pp. 71:1-71:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2017)

Copy BibTex To Clipboard

@InProceedings{lokshtanov_et_al:LIPIcs.ICALP.2017.71, author = {Lokshtanov, Daniel and Mouawad, Amer E. and Saurabh, Saket and Zehavi, Meirav}, title = {{Packing Cycles Faster Than Erdos-Posa}}, booktitle = {44th International Colloquium on Automata, Languages, and Programming (ICALP 2017)}, pages = {71:1--71:15}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-041-5}, ISSN = {1868-8969}, year = {2017}, volume = {80}, editor = {Chatzigiannakis, Ioannis and Indyk, Piotr and Kuhn, Fabian and Muscholl, Anca}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2017.71}, URN = {urn:nbn:de:0030-drops-73857}, doi = {10.4230/LIPIcs.ICALP.2017.71}, annote = {Keywords: Parameterized Complexity, Graph Algorithms, Cycle Packing, Erd\"{o}s-P\'{o}sa Theorem} }

Document

**Published in:** LIPIcs, Volume 78, 28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017)

In the Maximum-Duo Preservation String Mapping (Max-Duo PSM) problem, the input consists of two related strings A and B of length n and a nonnegative integer k. The objective is to determine whether there exists a mapping m from the set of positions of A to the set of positions of B that maps only to positions with the same character and preserves at least k duos, which are pairs of adjacent positions. We develop a randomized algorithm that solves Max-Duo PSM in time 4^k * n^{O(1)}, and a deterministic algorithm that solves this problem in time 6.855^k * n^{O(1)}. The previous best known (deterministic) algorithm for this problem has running time (8e)^{2k+o(k)} * n^{O(1)} [Beretta et al., Theor. Comput. Sci. 2016]. We also show that Max-Duo PSM admits a problem kernel of size O(k^3), improving upon the previous best known problem kernel of size O(k^6).

Christian Komusiewicz, Mateus de Oliveira Oliveira, and Meirav Zehavi. Revisiting the Parameterized Complexity of Maximum-Duo Preservation String Mapping. In 28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017). Leibniz International Proceedings in Informatics (LIPIcs), Volume 78, pp. 11:1-11:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2017)

Copy BibTex To Clipboard

@InProceedings{komusiewicz_et_al:LIPIcs.CPM.2017.11, author = {Komusiewicz, Christian and de Oliveira Oliveira, Mateus and Zehavi, Meirav}, title = {{Revisiting the Parameterized Complexity of Maximum-Duo Preservation String Mapping}}, booktitle = {28th Annual Symposium on Combinatorial Pattern Matching (CPM 2017)}, pages = {11:1--11:17}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-039-2}, ISSN = {1868-8969}, year = {2017}, volume = {78}, editor = {K\"{a}rkk\"{a}inen, Juha and Radoszewski, Jakub and Rytter, Wojciech}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2017.11}, URN = {urn:nbn:de:0030-drops-73436}, doi = {10.4230/LIPIcs.CPM.2017.11}, annote = {Keywords: comparative genomics, parameterized complexity, kernelization} }

Document

**Published in:** LIPIcs, Volume 77, 33rd International Symposium on Computational Geometry (SoCG 2017)

Given a 1.5-dimensional terrain T, also known as an x-monotone polygonal chain, the Terrain Guarding problem seeks a set of points of minimum size on T that guards all of the points on T. Here, we say that a point p guards a point q if no point of the line segment pq is strictly below T. The Terrain Guarding problem has been extensively studied for over 20 years. In 2005 it was already established that this problem admits a constant-factor approximation algorithm [SODA 2005]. However, only in 2010 King and Krohn [SODA 2010] finally showed that Terrain Guarding is NP-hard. In spite of the remarkable developments in approximation algorithms for Terrain Guarding, next to nothing is known about its parameterized complexity. In particular, the most intriguing open questions in this direction ask whether it admits a subexponential-time algorithm and whether it is fixed-parameter tractable. In this paper, we answer the first question affirmatively by developing an n^O(sqrt{k})-time algorithm for both Discrete Terrain Guarding and Continuous Terrain Guarding. We also make non-trivial progress with respect to the second question: we show that Discrete Orthogonal Terrain Guarding, a well-studied special case of Terrain Guarding, is fixed-parameter tractable.

Pradeesha Ashok, Fedor V. Fomin, Sudeshna Kolay, Saket Saurabh, and Meirav Zehavi. Exact Algorithms for Terrain Guarding. In 33rd International Symposium on Computational Geometry (SoCG 2017). Leibniz International Proceedings in Informatics (LIPIcs), Volume 77, pp. 11:1-11:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2017)

Copy BibTex To Clipboard

@InProceedings{ashok_et_al:LIPIcs.SoCG.2017.11, author = {Ashok, Pradeesha and Fomin, Fedor V. and Kolay, Sudeshna and Saurabh, Saket and Zehavi, Meirav}, title = {{Exact Algorithms for Terrain Guarding}}, booktitle = {33rd International Symposium on Computational Geometry (SoCG 2017)}, pages = {11:1--11:15}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-038-5}, ISSN = {1868-8969}, year = {2017}, volume = {77}, editor = {Aronov, Boris and Katz, Matthew J.}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2017.11}, URN = {urn:nbn:de:0030-drops-71975}, doi = {10.4230/LIPIcs.SoCG.2017.11}, annote = {Keywords: Terrain Guarding, Art Gallery, Exponential-Time Algorithms} }

Document

**Published in:** LIPIcs, Volume 66, 34th Symposium on Theoretical Aspects of Computer Science (STACS 2017)

The edit operation that contracts edges, which is a fundamental operation in the theory of graph minors, has recently gained substantial scientific attention from the viewpoint of Parameterized Complexity. In this paper, we examine an important family of graphs, namely the family of split graphs, which in the context of edge contractions, is proven to be significantly less obedient than one might expect. Formally, given a graph G and an integer k, the Split Contraction problem asks whether there exists a subset X of edges of G such that G/X is a split graph and X has at most k elements. Here, G/X is the graph obtained from G by contracting edges in X. It was previously claimed that the Split Contraction problem is fixed-parameter tractable. However, we show that, despite its deceptive simplicity, it is W[1]-hard. Our main result establishes the following conditional lower bound: under the Exponential Time Hypothesis, the Split Contraction problem cannot be solved in time 2^(o(l^2)) * poly(n) where l is the vertex cover number of the input graph. We also verify that this lower bound is essentially tight. To the best of our knowledge, this is the first tight lower bound of the form 2^(o(l^2)) * poly(n) for problems parameterized by the vertex cover number of the input graph. In particular, our approach to obtain this lower bound borrows the notion of harmonious coloring from Graph Theory, and might be of independent interest.

Akanksha Agrawal, Daniel Lokshtanov, Saket Saurabh, and Meirav Zehavi. Split Contraction: The Untold Story. In 34th Symposium on Theoretical Aspects of Computer Science (STACS 2017). Leibniz International Proceedings in Informatics (LIPIcs), Volume 66, pp. 5:1-5:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2017)

Copy BibTex To Clipboard

@InProceedings{agrawal_et_al:LIPIcs.STACS.2017.5, author = {Agrawal, Akanksha and Lokshtanov, Daniel and Saurabh, Saket and Zehavi, Meirav}, title = {{Split Contraction: The Untold Story}}, booktitle = {34th Symposium on Theoretical Aspects of Computer Science (STACS 2017)}, pages = {5:1--5:14}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-028-6}, ISSN = {1868-8969}, year = {2017}, volume = {66}, editor = {Vollmer, Heribert and Vall\'{e}e, Brigitte}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.STACS.2017.5}, URN = {urn:nbn:de:0030-drops-70297}, doi = {10.4230/LIPIcs.STACS.2017.5}, annote = {Keywords: Split Graph, Parameterized Complexity, Edge Contraction} }

Document

**Published in:** LIPIcs, Volume 66, 34th Symposium on Theoretical Aspects of Computer Science (STACS 2017)

The rigidity of a matrix A for a target rank r over a field F is the minimum Hamming distance between A and a matrix of rank at most r. Rigidity is a classical concept in Computational Complexity Theory: constructions of rigid matrices are known to imply lower bounds of significant importance relating to arithmetic circuits. Yet, from the viewpoint of Parameterized Complexity, the study of central properties of matrices in general, and of the rigidity of a matrix in particular, has been neglected. In this paper, we conduct a comprehensive study of different aspects of the computation of the rigidity of general matrices in the framework of Parameterized Complexity. Naturally, given parameters r and k, the Matrix Rigidity problem asks whether the rigidity of A for the target rank r is at most k. We show that in case F equals the reals or F is any finite field, this problem is fixed-parameter tractable with respect to k+r. To this end, we present a dimension reduction procedure, which may be a valuable primitive in future studies of problems of this nature. We also employ central tools in Real Algebraic Geometry, which are not well known in Parameterized Complexity, as a black box. In particular, we view the output of our dimension reduction procedure as an algebraic variety. Our main results are complemented by a W[1]-hardness result and a subexponential-time parameterized algorithm for a special case of Matrix Rigidity, highlighting the different flavors of this problem.

Fedor V. Fomin, Daniel Lokshtanov, S. M. Meesum, Saket Saurabh, and Meirav Zehavi. Matrix Rigidity from the Viewpoint of Parameterized Complexity. In 34th Symposium on Theoretical Aspects of Computer Science (STACS 2017). Leibniz International Proceedings in Informatics (LIPIcs), Volume 66, pp. 32:1-32:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2017)

Copy BibTex To Clipboard

@InProceedings{fomin_et_al:LIPIcs.STACS.2017.32, author = {Fomin, Fedor V. and Lokshtanov, Daniel and Meesum, S. M. and Saurabh, Saket and Zehavi, Meirav}, title = {{Matrix Rigidity from the Viewpoint of Parameterized Complexity}}, booktitle = {34th Symposium on Theoretical Aspects of Computer Science (STACS 2017)}, pages = {32:1--32:14}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-028-6}, ISSN = {1868-8969}, year = {2017}, volume = {66}, editor = {Vollmer, Heribert and Vall\'{e}e, Brigitte}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.STACS.2017.32}, URN = {urn:nbn:de:0030-drops-70019}, doi = {10.4230/LIPIcs.STACS.2017.32}, annote = {Keywords: Matrix Rigidity, Parameterized Complexity, Linear Algebra} }

Document

**Published in:** LIPIcs, Volume 65, 36th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2016)

The classic K-Cycle problem asks if a graph G, with vertex set V(G), has a simple cycle containing all vertices of a given set K subseteq V(G). In terms of colored graphs, it can be rephrased as follows: Given a graph G, a set K subset of V(G) and an injective coloring c from K to {1,2,...,|K|}, decide if G has a simple cycle containing each color in {1,2,...,|K|} (once). Another problem widely known since the introduction of color coding is {Colorful Cycle}. Given a graph G and a coloring c from V(G) to {1,2,...,k} for some natural number k, it asks if G has a simple cycle of length k containing each color in {1,2,...,k} (once). We study a generalization of these problems: Given a graph G, a set K subset of V(G), a list-coloring L from K to 2^{{1,2,...,k^*}} for some natural number k^* and a parameter k, List K-Cycle asks if one can assign a color to each vertex in K so that G would have a simple cycle (of arbitrary length) containing exactly k vertices from K with distinct colors.
We design a randomized algorithm for List K-Cycle running in time 2^kn^{O(1)} on an -vertex graph, matching the best known running times of algorithms for both K-Cycle and Colorful Cycle. Moreover, unless the Set Cover Conjecture is false, our algorithm is essentially optimal. We also study a variant of List K-Cycle that generalizes the classic Hamiltonicity problem, where one specifies the size of a solution. Our results integrate three related algebraic approaches, introduced by Bjorklund, Husfeldt and Taslaman (SODA'12), Bjorklund, Kaski and Kowalik (STACS'13), and Bjorklund (FOCS'10).

Fahad Panolan and Meirav Zehavi. Parameterized Algorithms for List K-Cycle. In 36th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2016). Leibniz International Proceedings in Informatics (LIPIcs), Volume 65, pp. 22:1-22:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2016)

Copy BibTex To Clipboard

@InProceedings{panolan_et_al:LIPIcs.FSTTCS.2016.22, author = {Panolan, Fahad and Zehavi, Meirav}, title = {{Parameterized Algorithms for List K-Cycle}}, booktitle = {36th IARCS Annual Conference on Foundations of Software Technology and Theoretical Computer Science (FSTTCS 2016)}, pages = {22:1--22:15}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-027-9}, ISSN = {1868-8969}, year = {2016}, volume = {65}, editor = {Lal, Akash and Akshay, S. and Saurabh, Saket and Sen, Sandeep}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.FSTTCS.2016.22}, URN = {urn:nbn:de:0030-drops-68571}, doi = {10.4230/LIPIcs.FSTTCS.2016.22}, annote = {Keywords: Parameterized Complexity, K-Cycle, Colorful Path, k-Path} }

Document

**Published in:** LIPIcs, Volume 64, 27th International Symposium on Algorithms and Computation (ISAAC 2016)

In a recent article Agrawal et al. (STACS 2016) studied a simultaneous variant of the classic Feedback Vertex Set problem, called Simultaneous Feedback Vertex Set (Sim-FVS). In this problem the input is an n-vertex graph G, an integer k and a coloring function col : E(G) -> 2^[alpha] , and the objective is to check whether there exists a vertex subset S of cardinality at most k in G such that for all i in [alpha], G_i - S is acyclic. Here, G_i = (V (G), {e in E(G) | i in col(e)}) and [alpha] = {1,...,alpha}. In this paper we consider the edge variant of the problem, namely, Simultaneous Feedback Edge Set (Sim-FES). In this problem, the input is same as the input of Sim-FVS and the objective is to check whether there is an edge subset S of cardinality at most k in G such that for all i in [alpha], G_i - S is acyclic. Unlike the vertex variant of the problem, when alpha = 1, the problem is equivalent to finding a maximal spanning forest and hence it is polynomial time solvable. We show that for alpha = 3 Sim-FES is NP-hard by giving a reduction from Vertex Cover on cubic-graphs. The same reduction shows that the problem does not admit an algorithm of running time O(2^o(k) n^O(1)) unless ETH fails. This hardness result is complimented by an FPT algorithm for Sim-FES running in time O(2^((omega k alpha) + (alpha log k)) n^O(1)), where omega is the exponent in the running time of matrix multiplication. The same algorithm gives a polynomial time algorithm for the case when alpha = 2. We also give a kernel for Sim-FES with (k alpha)^O(alpha) vertices. Finally, we consider the problem Maximum Simultaneous Acyclic Subgraph. Here, the input is a graph G, an integer q and, a coloring function col : E(G) -> 2^[alpha] . The question is whether there is a edge subset F of cardinality at least q in G such that for all i in [alpha], G[F_i] is acyclic. Here, F_i = {e in F | i in col(e)}. We give an FPT algorithm for Maximum Simultaneous Acyclic Subgraph running in time O(2^(omega q alpha) n^O(1) ). All our algorithms are based on parameterized version of the Matroid Parity problem.

Akanksha Agrawal, Fahad Panolan, Saket Saurabh, and Meirav Zehavi. Simultaneous Feedback Edge Set: A Parameterized Perspective. In 27th International Symposium on Algorithms and Computation (ISAAC 2016). Leibniz International Proceedings in Informatics (LIPIcs), Volume 64, pp. 5:1-5:13, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2016)

Copy BibTex To Clipboard

@InProceedings{agrawal_et_al:LIPIcs.ISAAC.2016.5, author = {Agrawal, Akanksha and Panolan, Fahad and Saurabh, Saket and Zehavi, Meirav}, title = {{Simultaneous Feedback Edge Set: A Parameterized Perspective}}, booktitle = {27th International Symposium on Algorithms and Computation (ISAAC 2016)}, pages = {5:1--5:13}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-026-2}, ISSN = {1868-8969}, year = {2016}, volume = {64}, editor = {Hong, Seok-Hee}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ISAAC.2016.5}, URN = {urn:nbn:de:0030-drops-67767}, doi = {10.4230/LIPIcs.ISAAC.2016.5}, annote = {Keywords: parameterized complexity, feedback edge set, alpha-matroid parity} }

Document

**Published in:** LIPIcs, Volume 64, 27th International Symposium on Algorithms and Computation (ISAAC 2016)

In the Directed Feedback Vertex Set (DFVS) problem, we are given a digraph D on n vertices and a positive integer k and the objective is to check whether there exists a set of vertices S of size at most k such that F = D - S is a directed acyclic digraph. In a recent paper, Mnich and van Leeuwen [STACS 2016] considered the kernelization complexity of DFVS with an additional restriction on F, namely that F must be an out-forest (Out-Forest Vertex Deletion Set), an out-tree (Out-Tree Vertex Deletion Set), or a (directed) pumpkin (Pumpkin Vertex Deletion Set). Their objective was to shed some light on the kernelization complexity of the DFVS problem, a well known open problem in the area of Parameterized Complexity. In this article, we improve the kernel sizes of Out-Forest Vertex Deletion Set from O(k^3) to O(k^2) and of Pumpkin Vertex Deletion Set from O(k^18) to O(k^3). We also prove that the former kernel size is tight under certain complexity theoretic assumptions.

Akanksha Agrawal, Saket Saurabh, Roohani Sharma, and Meirav Zehavi. Kernels for Deletion to Classes of Acyclic Digraphs. In 27th International Symposium on Algorithms and Computation (ISAAC 2016). Leibniz International Proceedings in Informatics (LIPIcs), Volume 64, pp. 6:1-6:12, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2016)

Copy BibTex To Clipboard

@InProceedings{agrawal_et_al:LIPIcs.ISAAC.2016.6, author = {Agrawal, Akanksha and Saurabh, Saket and Sharma, Roohani and Zehavi, Meirav}, title = {{Kernels for Deletion to Classes of Acyclic Digraphs}}, booktitle = {27th International Symposium on Algorithms and Computation (ISAAC 2016)}, pages = {6:1--6:12}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-026-2}, ISSN = {1868-8969}, year = {2016}, volume = {64}, editor = {Hong, Seok-Hee}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ISAAC.2016.6}, URN = {urn:nbn:de:0030-drops-67777}, doi = {10.4230/LIPIcs.ISAAC.2016.6}, annote = {Keywords: out-forest, pumpkin, parameterized complexity, kernelization} }

Document

**Published in:** LIPIcs, Volume 54, 27th Annual Symposium on Combinatorial Pattern Matching (CPM 2016)

Problems of genome rearrangement are central in both evolution and cancer. Most evolutionary scenarios have been studied under the assumption that the genome contains a single copy of each gene. In contrast, tumor genomes undergo deletions and duplications, and thus the number of copies of genes varies. The number of copies of each gene along a chromosome is called its copy number profile. Understanding copy number profile changes can assist in predicting disease progression and treatment. To date, questions related to distances between copy number profiles gained little scientific attention. Here we focus on the following fundamental problem, introduced by Schwarz et al. (PLOS Comp. Biol., 2014): given two copy number profiles, u and v, compute the edit distance from u to v, where the edit operations are segmental deletions and amplifications. We establish the computational complexity of this problem, showing that it is solvable in linear time and constant space.

Ron Shamir, Meirav Zehavi, and Ron Zeira. A Linear-Time Algorithm for the Copy Number Transformation Problem. In 27th Annual Symposium on Combinatorial Pattern Matching (CPM 2016). Leibniz International Proceedings in Informatics (LIPIcs), Volume 54, pp. 16:1-16:13, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2016)

Copy BibTex To Clipboard

@InProceedings{shamir_et_al:LIPIcs.CPM.2016.16, author = {Shamir, Ron and Zehavi, Meirav and Zeira, Ron}, title = {{A Linear-Time Algorithm for the Copy Number Transformation Problem}}, booktitle = {27th Annual Symposium on Combinatorial Pattern Matching (CPM 2016)}, pages = {16:1--16:13}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-012-5}, ISSN = {1868-8969}, year = {2016}, volume = {54}, editor = {Grossi, Roberto and Lewenstein, Moshe}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2016.16}, URN = {urn:nbn:de:0030-drops-60789}, doi = {10.4230/LIPIcs.CPM.2016.16}, annote = {Keywords: Genome Rearrangement, Copy Number} }

X

Feedback for Dagstuhl Publishing

Feedback submitted

Please try again later or send an E-mail