Published in: LIPIcs, Volume 306, 49th International Symposium on Mathematical Foundations of Computer Science (MFCS 2024)
Dibyayan Chakraborty, Antoine Dailly, Florent Foucaud, and Ralf Klasing. Algorithms and Complexity for Path Covers of Temporal DAGs. In 49th International Symposium on Mathematical Foundations of Computer Science (MFCS 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 306, pp. 38:1-38:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)
@InProceedings{chakraborty_et_al:LIPIcs.MFCS.2024.38, author = {Chakraborty, Dibyayan and Dailly, Antoine and Foucaud, Florent and Klasing, Ralf}, title = {{Algorithms and Complexity for Path Covers of Temporal DAGs}}, booktitle = {49th International Symposium on Mathematical Foundations of Computer Science (MFCS 2024)}, pages = {38:1--38:17}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-335-5}, ISSN = {1868-8969}, year = {2024}, volume = {306}, editor = {Kr\'{a}lovi\v{c}, Rastislav and Ku\v{c}era, Anton{\'\i}n}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2024.38}, URN = {urn:nbn:de:0030-drops-205940}, doi = {10.4230/LIPIcs.MFCS.2024.38}, annote = {Keywords: Temporal Graphs, Dilworth’s Theorem, DAGs, Path Cover, Temporally Disjoint Paths, Algorithms, Oriented Trees, Treewidth} }
Published in: LIPIcs, Volume 301, 22nd International Symposium on Experimental Algorithms (SEA 2024)
Manuel Cáceres, Brendan Mumey, Santeri Toivonen, and Alexandru I. Tomescu. Practical Minimum Path Cover. In 22nd International Symposium on Experimental Algorithms (SEA 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 301, pp. 3:1-3:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)
@InProceedings{caceres_et_al:LIPIcs.SEA.2024.3, author = {C\'{a}ceres, Manuel and Mumey, Brendan and Toivonen, Santeri and Tomescu, Alexandru I.}, title = {{Practical Minimum Path Cover}}, booktitle = {22nd International Symposium on Experimental Algorithms (SEA 2024)}, pages = {3:1--3:19}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-325-6}, ISSN = {1868-8969}, year = {2024}, volume = {301}, editor = {Liberti, Leo}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SEA.2024.3}, URN = {urn:nbn:de:0030-drops-203687}, doi = {10.4230/LIPIcs.SEA.2024.3}, annote = {Keywords: minimum path cover, directed acyclic graph, maximum flow, parameterized algorithms, edge sparsification, algorithm engineering} }
Published in: LIPIcs, Volume 301, 22nd International Symposium on Experimental Algorithms (SEA 2024)
Andreas Grigorjew, Fernando H. C. Dias, Andrea Cracco, Romeo Rizzi, and Alexandru I. Tomescu. Accelerating ILP Solvers for Minimum Flow Decompositions Through Search Space and Dimensionality Reductions. In 22nd International Symposium on Experimental Algorithms (SEA 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 301, pp. 14:1-14:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)
@InProceedings{grigorjew_et_al:LIPIcs.SEA.2024.14, author = {Grigorjew, Andreas and Dias, Fernando H. C. and Cracco, Andrea and Rizzi, Romeo and Tomescu, Alexandru I.}, title = {{Accelerating ILP Solvers for Minimum Flow Decompositions Through Search Space and Dimensionality Reductions}}, booktitle = {22nd International Symposium on Experimental Algorithms (SEA 2024)}, pages = {14:1--14:19}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-325-6}, ISSN = {1868-8969}, year = {2024}, volume = {301}, editor = {Liberti, Leo}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SEA.2024.14}, URN = {urn:nbn:de:0030-drops-203792}, doi = {10.4230/LIPIcs.SEA.2024.14}, annote = {Keywords: Flow decomposition, Integer Linear Programming, Safety, RNA-seq, RNA transcript assembly, isoform} }
Published in: LIPIcs, Volume 261, 50th International Colloquium on Automata, Languages, and Programming (ICALP 2023)
Manuel Cáceres. Minimum Chain Cover in Almost Linear Time. In 50th International Colloquium on Automata, Languages, and Programming (ICALP 2023). Leibniz International Proceedings in Informatics (LIPIcs), Volume 261, pp. 31:1-31:12, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2023)
@InProceedings{caceres:LIPIcs.ICALP.2023.31, author = {C\'{a}ceres, Manuel}, title = {{Minimum Chain Cover in Almost Linear Time}}, booktitle = {50th International Colloquium on Automata, Languages, and Programming (ICALP 2023)}, pages = {31:1--31:12}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-278-5}, ISSN = {1868-8969}, year = {2023}, volume = {261}, editor = {Etessami, Kousha and Feige, Uriel and Puppis, Gabriele}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2023.31}, URN = {urn:nbn:de:0030-drops-180834}, doi = {10.4230/LIPIcs.ICALP.2023.31}, annote = {Keywords: Minimum chain cover, directed acyclic graph, minimum flow, flow decomposition, mergeable dictionaries, amortized running time} }
Published in: LIPIcs, Volume 244, 30th Annual European Symposium on Algorithms (ESA 2022)
Manuel Cáceres, Massimo Cairo, Andreas Grigorjew, Shahbaz Khan, Brendan Mumey, Romeo Rizzi, Alexandru I. Tomescu, and Lucia Williams. Width Helps and Hinders Splitting Flows. In 30th Annual European Symposium on Algorithms (ESA 2022). Leibniz International Proceedings in Informatics (LIPIcs), Volume 244, pp. 31:1-31:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2022)
@InProceedings{caceres_et_al:LIPIcs.ESA.2022.31, author = {C\'{a}ceres, Manuel and Cairo, Massimo and Grigorjew, Andreas and Khan, Shahbaz and Mumey, Brendan and Rizzi, Romeo and Tomescu, Alexandru I. and Williams, Lucia}, title = {{Width Helps and Hinders Splitting Flows}}, booktitle = {30th Annual European Symposium on Algorithms (ESA 2022)}, pages = {31:1--31:14}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-247-1}, ISSN = {1868-8969}, year = {2022}, volume = {244}, editor = {Chechik, Shiri and Navarro, Gonzalo and Rotenberg, Eva and Herman, Grzegorz}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2022.31}, URN = {urn:nbn:de:0030-drops-169695}, doi = {10.4230/LIPIcs.ESA.2022.31}, annote = {Keywords: Flow decomposition, approximation algorithms, graph width} }
Published in: LIPIcs, Volume 201, 21st International Workshop on Algorithms in Bioinformatics (WABI 2021)
Lucia Williams, Alexandru I. Tomescu, and Brendan Mumey. Flow Decomposition with Subpath Constraints. In 21st International Workshop on Algorithms in Bioinformatics (WABI 2021). Leibniz International Proceedings in Informatics (LIPIcs), Volume 201, pp. 16:1-16:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2021)
@InProceedings{williams_et_al:LIPIcs.WABI.2021.16, author = {Williams, Lucia and Tomescu, Alexandru I. and Mumey, Brendan}, title = {{Flow Decomposition with Subpath Constraints}}, booktitle = {21st International Workshop on Algorithms in Bioinformatics (WABI 2021)}, pages = {16:1--16:15}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-200-6}, ISSN = {1868-8969}, year = {2021}, volume = {201}, editor = {Carbone, Alessandra and El-Kebir, Mohammed}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2021.16}, URN = {urn:nbn:de:0030-drops-143695}, doi = {10.4230/LIPIcs.WABI.2021.16}, annote = {Keywords: Flow decomposition, subpath constraints, RNA-Seq} }