LIPIcs, Volume 312
WABI 2024, September 2-4, 2024, Royal Holloway, London, United Kingdom
Editors: Solon P. Pissis and Wing-Kin Sung
LIPIcs, Volume 128
CPM 2019, June 18-20, 2019, Pisa, Italy
Editors: Nadia Pisanti and Solon P. Pissis
LIPIcs, Volume 75
SEA 2017, June 21-23, 2017, London, UK
Editors: Costas S. Iliopoulos, Solon P. Pissis, Simon J. Puglisi, and Rajeev Raman
Published in: LIPIcs, Volume 308, 32nd Annual European Symposium on Algorithms (ESA 2024)
Eva Rotenberg. Simple (Invited Talk). In 32nd Annual European Symposium on Algorithms (ESA 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 308, pp. 2:1-2:2, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)
@InProceedings{rotenberg:LIPIcs.ESA.2024.2, author = {Rotenberg, Eva}, title = {{Simple}}, booktitle = {32nd Annual European Symposium on Algorithms (ESA 2024)}, pages = {2:1--2:2}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-338-6}, ISSN = {1868-8969}, year = {2024}, volume = {308}, editor = {Chan, Timothy and Fischer, Johannes and Iacono, John and Herman, Grzegorz}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2024.2}, URN = {urn:nbn:de:0030-drops-210739}, doi = {10.4230/LIPIcs.ESA.2024.2}, annote = {Keywords: Simplicity, graph algorithms, computational geometry, algorithmic simplification, data structures, combinatorics, proof simplification, dynamic graphs} }
Published in: LIPIcs, Volume 308, 32nd Annual European Symposium on Algorithms (ESA 2024)
Aranya Banerjee, Daniel Gibney, and Sharma V. Thankachan. Longest Common Substring with Gaps and Related Problems. In 32nd Annual European Symposium on Algorithms (ESA 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 308, pp. 16:1-16:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)
@InProceedings{banerjee_et_al:LIPIcs.ESA.2024.16, author = {Banerjee, Aranya and Gibney, Daniel and Thankachan, Sharma V.}, title = {{Longest Common Substring with Gaps and Related Problems}}, booktitle = {32nd Annual European Symposium on Algorithms (ESA 2024)}, pages = {16:1--16:18}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-338-6}, ISSN = {1868-8969}, year = {2024}, volume = {308}, editor = {Chan, Timothy and Fischer, Johannes and Iacono, John and Herman, Grzegorz}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2024.16}, URN = {urn:nbn:de:0030-drops-210877}, doi = {10.4230/LIPIcs.ESA.2024.16}, annote = {Keywords: Pattern Matching, Longest Common Subsequence, Episode Matching} }
Published in: LIPIcs, Volume 308, 32nd Annual European Symposium on Algorithms (ESA 2024)
Gabriel Bathie, Panagiotis Charalampopoulos, and Tatiana Starikovskaya. Longest Common Extensions with Wildcards: Trade-Off and Applications. In 32nd Annual European Symposium on Algorithms (ESA 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 308, pp. 19:1-19:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)
@InProceedings{bathie_et_al:LIPIcs.ESA.2024.19, author = {Bathie, Gabriel and Charalampopoulos, Panagiotis and Starikovskaya, Tatiana}, title = {{Longest Common Extensions with Wildcards: Trade-Off and Applications}}, booktitle = {32nd Annual European Symposium on Algorithms (ESA 2024)}, pages = {19:1--19:17}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-338-6}, ISSN = {1868-8969}, year = {2024}, volume = {308}, editor = {Chan, Timothy and Fischer, Johannes and Iacono, John and Herman, Grzegorz}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2024.19}, URN = {urn:nbn:de:0030-drops-210904}, doi = {10.4230/LIPIcs.ESA.2024.19}, annote = {Keywords: Longest common prefix, longest common extension, wildcards, Boolean matrix multiplication, approximate pattern matching, periodicity arrays} }
Published in: LIPIcs, Volume 308, 32nd Annual European Symposium on Algorithms (ESA 2024)
Gabriel Bathie, Panagiotis Charalampopoulos, and Tatiana Starikovskaya. Pattern Matching with Mismatches and Wildcards. In 32nd Annual European Symposium on Algorithms (ESA 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 308, pp. 20:1-20:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)
@InProceedings{bathie_et_al:LIPIcs.ESA.2024.20, author = {Bathie, Gabriel and Charalampopoulos, Panagiotis and Starikovskaya, Tatiana}, title = {{Pattern Matching with Mismatches and Wildcards}}, booktitle = {32nd Annual European Symposium on Algorithms (ESA 2024)}, pages = {20:1--20:15}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-338-6}, ISSN = {1868-8969}, year = {2024}, volume = {308}, editor = {Chan, Timothy and Fischer, Johannes and Iacono, John and Herman, Grzegorz}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2024.20}, URN = {urn:nbn:de:0030-drops-210910}, doi = {10.4230/LIPIcs.ESA.2024.20}, annote = {Keywords: pattern matching, wildcards, mismatches, Hamming distance} }
Published in: LIPIcs, Volume 308, 32nd Annual European Symposium on Algorithms (ESA 2024)
Itai Boneh, Shay Golan, and Arseny Shur. String 2-Covers with No Length Restrictions. In 32nd Annual European Symposium on Algorithms (ESA 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 308, pp. 31:1-31:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)
@InProceedings{boneh_et_al:LIPIcs.ESA.2024.31, author = {Boneh, Itai and Golan, Shay and Shur, Arseny}, title = {{String 2-Covers with No Length Restrictions}}, booktitle = {32nd Annual European Symposium on Algorithms (ESA 2024)}, pages = {31:1--31:18}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-338-6}, ISSN = {1868-8969}, year = {2024}, volume = {308}, editor = {Chan, Timothy and Fischer, Johannes and Iacono, John and Herman, Grzegorz}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2024.31}, URN = {urn:nbn:de:0030-drops-211029}, doi = {10.4230/LIPIcs.ESA.2024.31}, annote = {Keywords: Quasi-periodicity, String cover, Range query, Range stabbing} }
Published in: LIPIcs, Volume 308, 32nd Annual European Symposium on Algorithms (ESA 2024)
Kou Hamada, Sankardeep Chakraborty, Seungbum Jo, Takuto Koriyama, Kunihiko Sadakane, and Srinivasa Rao Satti. A Simple Representation of Tree Covering Utilizing Balanced Parentheses and Efficient Implementation of Average-Case Optimal RMQs. In 32nd Annual European Symposium on Algorithms (ESA 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 308, pp. 64:1-64:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)
@InProceedings{hamada_et_al:LIPIcs.ESA.2024.64, author = {Hamada, Kou and Chakraborty, Sankardeep and Jo, Seungbum and Koriyama, Takuto and Sadakane, Kunihiko and Satti, Srinivasa Rao}, title = {{A Simple Representation of Tree Covering Utilizing Balanced Parentheses and Efficient Implementation of Average-Case Optimal RMQs}}, booktitle = {32nd Annual European Symposium on Algorithms (ESA 2024)}, pages = {64:1--64:18}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-338-6}, ISSN = {1868-8969}, year = {2024}, volume = {308}, editor = {Chan, Timothy and Fischer, Johannes and Iacono, John and Herman, Grzegorz}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2024.64}, URN = {urn:nbn:de:0030-drops-211359}, doi = {10.4230/LIPIcs.ESA.2024.64}, annote = {Keywords: Hypersuccinct trees, Succinct data structures, Range minimum queries, Binary trees} }
Published in: LIPIcs, Volume 308, 32nd Annual European Symposium on Algorithms (ESA 2024)
Zsuzsanna Lipták, Francesco Masillo, and Gonzalo Navarro. A Textbook Solution for Dynamic Strings. In 32nd Annual European Symposium on Algorithms (ESA 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 308, pp. 86:1-86:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)
@InProceedings{liptak_et_al:LIPIcs.ESA.2024.86, author = {Lipt\'{a}k, Zsuzsanna and Masillo, Francesco and Navarro, Gonzalo}, title = {{A Textbook Solution for Dynamic Strings}}, booktitle = {32nd Annual European Symposium on Algorithms (ESA 2024)}, pages = {86:1--86:16}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-338-6}, ISSN = {1868-8969}, year = {2024}, volume = {308}, editor = {Chan, Timothy and Fischer, Johannes and Iacono, John and Herman, Grzegorz}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2024.86}, URN = {urn:nbn:de:0030-drops-211576}, doi = {10.4230/LIPIcs.ESA.2024.86}, annote = {Keywords: dynamic strings, splay trees, dynamic data structures, LCP, circular strings} }
Published in: LIPIcs, Volume 308, 32nd Annual European Symposium on Algorithms (ESA 2024)
Samuel McCauley. Improved Space-Efficient Approximate Nearest Neighbor Search Using Function Inversion. In 32nd Annual European Symposium on Algorithms (ESA 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 308, pp. 88:1-88:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)
@InProceedings{mccauley:LIPIcs.ESA.2024.88, author = {McCauley, Samuel}, title = {{Improved Space-Efficient Approximate Nearest Neighbor Search Using Function Inversion}}, booktitle = {32nd Annual European Symposium on Algorithms (ESA 2024)}, pages = {88:1--88:19}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-338-6}, ISSN = {1868-8969}, year = {2024}, volume = {308}, editor = {Chan, Timothy and Fischer, Johannes and Iacono, John and Herman, Grzegorz}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2024.88}, URN = {urn:nbn:de:0030-drops-211590}, doi = {10.4230/LIPIcs.ESA.2024.88}, annote = {Keywords: similarity search, locality-sensitive hashing, randomized algorithms, data structures, space efficiency, function inversion} }
Published in: LIPIcs, Volume 312, 24th International Workshop on Algorithms in Bioinformatics (WABI 2024)
24th International Workshop on Algorithms in Bioinformatics (WABI 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 312, pp. 1-454, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)
@Proceedings{pissis_et_al:LIPIcs.WABI.2024, title = {{LIPIcs, Volume 312, WABI 2024, Complete Volume}}, booktitle = {24th International Workshop on Algorithms in Bioinformatics (WABI 2024)}, pages = {1--454}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-340-9}, ISSN = {1868-8969}, year = {2024}, volume = {312}, editor = {Pissis, Solon P. and Sung, Wing-Kin}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2024}, URN = {urn:nbn:de:0030-drops-206430}, doi = {10.4230/LIPIcs.WABI.2024}, annote = {Keywords: LIPIcs, Volume 312, WABI 2024, Complete Volume} }
Published in: LIPIcs, Volume 312, 24th International Workshop on Algorithms in Bioinformatics (WABI 2024)
Tomáš Vinař. Bioinformatics of Pathogens (Invited Talk). In 24th International Workshop on Algorithms in Bioinformatics (WABI 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 312, pp. 1:1-1:2, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)
@InProceedings{vinar:LIPIcs.WABI.2024.1, author = {Vina\v{r}, Tom\'{a}\v{s}}, title = {{Bioinformatics of Pathogens}}, booktitle = {24th International Workshop on Algorithms in Bioinformatics (WABI 2024)}, pages = {1:1--1:2}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-340-9}, ISSN = {1868-8969}, year = {2024}, volume = {312}, editor = {Pissis, Solon P. and Sung, Wing-Kin}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2024.1}, URN = {urn:nbn:de:0030-drops-206455}, doi = {10.4230/LIPIcs.WABI.2024.1}, annote = {Keywords: sequence analysis, genome assembly, neural networks, probabilistic modeling} }
Published in: LIPIcs, Volume 312, 24th International Workshop on Algorithms in Bioinformatics (WABI 2024)
Luís Cunha, Ignasi Sau, and Uéverton Souza. On the Complexity of the Median and Closest Permutation Problems. In 24th International Workshop on Algorithms in Bioinformatics (WABI 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 312, pp. 2:1-2:23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)
@InProceedings{cunha_et_al:LIPIcs.WABI.2024.2, author = {Cunha, Lu{\'\i}s and Sau, Ignasi and Souza, U\'{e}verton}, title = {{On the Complexity of the Median and Closest Permutation Problems}}, booktitle = {24th International Workshop on Algorithms in Bioinformatics (WABI 2024)}, pages = {2:1--2:23}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-340-9}, ISSN = {1868-8969}, year = {2024}, volume = {312}, editor = {Pissis, Solon P. and Sung, Wing-Kin}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2024.2}, URN = {urn:nbn:de:0030-drops-206468}, doi = {10.4230/LIPIcs.WABI.2024.2}, annote = {Keywords: Median problem, Closest problem, Genome rearrangements, Parameterized complexity} }
Published in: LIPIcs, Volume 312, 24th International Workshop on Algorithms in Bioinformatics (WABI 2024)
Yao-ban Chan. An Efficient Algorithm for the Reconciliation of a Gene Network and Species Tree. In 24th International Workshop on Algorithms in Bioinformatics (WABI 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 312, pp. 3:1-3:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)
@InProceedings{chan:LIPIcs.WABI.2024.3, author = {Chan, Yao-ban}, title = {{An Efficient Algorithm for the Reconciliation of a Gene Network and Species Tree}}, booktitle = {24th International Workshop on Algorithms in Bioinformatics (WABI 2024)}, pages = {3:1--3:17}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-340-9}, ISSN = {1868-8969}, year = {2024}, volume = {312}, editor = {Pissis, Solon P. and Sung, Wing-Kin}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2024.3}, URN = {urn:nbn:de:0030-drops-206472}, doi = {10.4230/LIPIcs.WABI.2024.3}, annote = {Keywords: Reconciliation, recombination, paralog exchange, phylogenetic network, gene duplication, gene loss} }
Feedback for Dagstuhl Publishing