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Volume

LIPIcs, Volume 129

35th International Symposium on Computational Geometry (SoCG 2019)

SoCG 2019, June 18-21, 2019, Portland, Oregon, USA

Editors: Gill Barequet and Yusu Wang

Document

DOI: 10.4230/LIPIcs.WADS.2025.33

Spanner for the 0/1/∞ Weighted Region Problem

Authors: Joachim Gudmundsson, Zijin Huang, André van Renssen, and Sampson Wong

Published in: LIPIcs, Volume 349, 19th International Symposium on Algorithms and Data Structures (WADS 2025)

Abstract

We consider the problem of computing an approximate weighted shortest path in a weighted planar subdivision, with weights assigned from the set {0, 1, ∞}. The subdivision includes zero-cost regions (0-regions) with weight 0 and obstacles with weight ∞, all embedded in a plane with weight 1. In a polygonal domain, where the 0-regions and obstacles are non-overlapping polygons (not necessarily convex) with in total N vertices, we present an algorithm that computes a (1 + ε)-approximate spanner of the input vertices in expected Õ(N/ε³) time, for 0 < ε < 1. Using our spanner, we can compute a (1 + ε)-approximate weighted shortest path between any two points (not necessarily vertices) in Õ(N/ε³) time. Furthermore, we prove that our results more generally apply to non-polygonal convex regions. Using this generalisation, one can approximate the weak partial Fréchet similarity [Buchin et al., 2009] between two polygonal curves in expected Õ(n²/ε²) time, where n is the total number of vertices of the input curves.

Cite as

Joachim Gudmundsson, Zijin Huang, André van Renssen, and Sampson Wong. Spanner for the 0/1/∞ Weighted Region Problem. In 19th International Symposium on Algorithms and Data Structures (WADS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 349, pp. 33:1-33:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{gudmundsson_et_al:LIPIcs.WADS.2025.33,
  author =	{Gudmundsson, Joachim and Huang, Zijin and van Renssen, Andr\'{e} and Wong, Sampson},
  title =	{{Spanner for the 0/1/∞ Weighted Region Problem}},
  booktitle =	{19th International Symposium on Algorithms and Data Structures (WADS 2025)},
  pages =	{33:1--33:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-398-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{349},
  editor =	{Morin, Pat and Oh, Eunjin},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WADS.2025.33},
  URN =		{urn:nbn:de:0030-drops-242644},
  doi =		{10.4230/LIPIcs.WADS.2025.33},
  annote =	{Keywords: weighted region problem, approximate shortest path, spanner}
}

Document

DOI: 10.4230/LIPIcs.SEA.2025.7

Continuous Map Matching to Paths Under Travel Time Constraints

Authors: Yannick Bosch and Sabine Storandt

Published in: LIPIcs, Volume 338, 23rd International Symposium on Experimental Algorithms (SEA 2025)

Abstract

In this paper, we study the problem of map matching with travel time constraints. Given a sequence of k spatio-temporal measurements and an embedded path graph with travel time costs, the goal is to snap each measurement to a close-by location in the graph, such that consecutive locations can be reached from one another along the path within the timestamp difference of the respective measurements. This problem arises in public transit data processing as well as in map matching of movement trajectories to general graphs. We show that the classical approach for this problem, which relies on selecting a finite set of candidate locations in the graph for each measurement, cannot guarantee to find a consistent solution. We propose a new algorithm that can deal with an infinite set of candidate locations per measurement. We prove that our algorithm always detects a consistent map matching path (if one exists). Despite the enlarged candidate set, we also demonstrate that our algorithm has superior running time in theory and practice. For a path graph with n nodes, we show that our algorithm runs in 𝒪(k² n log {nk}) and under mild assumptions in 𝒪(k n ^λ + n log³ n) for λ ≈ 0.695. This is a significant improvement over the baseline, which runs in 𝒪(k n²) and which might not even identify a correct solution. The performance of our algorithm hinges on an efficient segment-circle intersection data structure. We describe how to design and implement such a data structure for our application. In the experimental evaluation, we demonstrate the usefulness of our novel algorithm on a diverse set of generated measurements as well as GTFS data.

Cite as

Yannick Bosch and Sabine Storandt. Continuous Map Matching to Paths Under Travel Time Constraints. In 23rd International Symposium on Experimental Algorithms (SEA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 338, pp. 7:1-7:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{bosch_et_al:LIPIcs.SEA.2025.7,
  author =	{Bosch, Yannick and Storandt, Sabine},
  title =	{{Continuous Map Matching to Paths Under Travel Time Constraints}},
  booktitle =	{23rd International Symposium on Experimental Algorithms (SEA 2025)},
  pages =	{7:1--7:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-375-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{338},
  editor =	{Mutzel, Petra and Prezza, Nicola},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SEA.2025.7},
  URN =		{urn:nbn:de:0030-drops-232457},
  doi =		{10.4230/LIPIcs.SEA.2025.7},
  annote =	{Keywords: Map matching, Travel time, Segment-circle intersection data structure}
}

Document

Track A: Algorithms, Complexity and Games

DOI: 10.4230/LIPIcs.ICALP.2025.133

Faster, Deterministic and Space Efficient Subtrajectory Clustering

Authors: Ivor van der Hoog, Thijs van der Horst, and Tim Ophelders

Published in: LIPIcs, Volume 334, 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)

Abstract

Given a trajectory T and a distance Δ, we wish to find a set C of curves of complexity at most 𝓁, such that we can cover T with subcurves that each are within Fréchet distance Δ to at least one curve in C. We call C an (𝓁,Δ)-clustering and aim to find an (𝓁,Δ)-clustering of minimum cardinality. This problem variant was introduced by Akitaya et al. (2021) and shown to be NP-complete. The main focus has therefore been on bicriteria approximation algorithms, allowing for the clustering to be an (𝓁, Θ(Δ))-clustering of roughly optimal size. We present algorithms that construct (𝓁,4Δ)-clusterings of 𝒪(k log n) size, where k is the size of the optimal (𝓁, Δ)-clustering. We use 𝒪(n³) space and 𝒪(k n³ log⁴ n) time. Our algorithms significantly improve upon the clustering quality (improving the approximation factor in Δ) and size (whenever 𝓁 ∈ Ω(log n / log k)). We offer deterministic running times improving known expected bounds by a factor near-linear in 𝓁. Additionally, we match the space usage of prior work, and improve it substantially, by a factor super-linear in n𝓁, when compared to deterministic results.

Cite as

Ivor van der Hoog, Thijs van der Horst, and Tim Ophelders. Faster, Deterministic and Space Efficient Subtrajectory Clustering. In 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 334, pp. 133:1-133:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{vanderhoog_et_al:LIPIcs.ICALP.2025.133,
  author =	{van der Hoog, Ivor and van der Horst, Thijs and Ophelders, Tim},
  title =	{{Faster, Deterministic and Space Efficient Subtrajectory Clustering}},
  booktitle =	{52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)},
  pages =	{133:1--133:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-372-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{334},
  editor =	{Censor-Hillel, Keren and Grandoni, Fabrizio and Ouaknine, Jo\"{e}l and Puppis, Gabriele},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2025.133},
  URN =		{urn:nbn:de:0030-drops-235109},
  doi =		{10.4230/LIPIcs.ICALP.2025.133},
  annote =	{Keywords: Fr\'{e}chet distance, clustering, set cover}
}

Document

DOI: 10.4230/LIPIcs.SoCG.2025.58

Tracking the Persistence of Harmonic Chains: Barcode and Stability

Authors: Tao Hou, Salman Parsa, and Bei Wang

Published in: LIPIcs, Volume 332, 41st International Symposium on Computational Geometry (SoCG 2025)

Abstract

The persistence barcode is a topological descriptor of data that plays a fundamental role in topological data analysis. Given a filtration of data, the persistence barcode tracks the evolution of its homology groups. In this paper, we introduce a new type of barcode, called the harmonic chain barcode, which tracks the evolution of harmonic chains. In addition, we show that the harmonic chain barcode is stable. Given a filtration of a simplicial complex of size m, we present an algorithm to compute its harmonic chain barcode in O(m³) time. Consequently, the harmonic chain barcode can enrich the family of topological descriptors in applications where a persistence barcode is applicable, such as feature vectorization and machine learning.

Cite as

Tao Hou, Salman Parsa, and Bei Wang. Tracking the Persistence of Harmonic Chains: Barcode and Stability. In 41st International Symposium on Computational Geometry (SoCG 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 332, pp. 58:1-58:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{hou_et_al:LIPIcs.SoCG.2025.58,
  author =	{Hou, Tao and Parsa, Salman and Wang, Bei},
  title =	{{Tracking the Persistence of Harmonic Chains: Barcode and Stability}},
  booktitle =	{41st International Symposium on Computational Geometry (SoCG 2025)},
  pages =	{58:1--58:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-370-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{332},
  editor =	{Aichholzer, Oswin and Wang, Haitao},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2025.58},
  URN =		{urn:nbn:de:0030-drops-232100},
  doi =		{10.4230/LIPIcs.SoCG.2025.58},
  annote =	{Keywords: Persistent homology, harmonic chains, topological data analysis}
}

Document

DOI: 10.4230/LIPIcs.SoCG.2025.6

A Sparse Multicover Bifiltration of Linear Size

Authors: Ángel Javier Alonso

Published in: LIPIcs, Volume 332, 41st International Symposium on Computational Geometry (SoCG 2025)

Abstract

The k-cover of a point cloud X of ℝ^d at radius r is the set of all those points within distance r of at least k points of X. By varying r and k we obtain a two-parameter filtration known as the multicover bifiltration. This bifiltration has received attention recently due to being choice-free and robust to outliers. However, it is hard to compute: the smallest known equivalent simplicial bifiltration has O(|X|^{d+1}) simplices. In this paper we introduce a (1+ε)-approximation of the multicover bifiltration of linear size O(|X|), for fixed d and ε. The methods also apply to the subdivision Rips bifiltration on metric spaces of bounded doubling dimension yielding analogous results.

Cite as

Ángel Javier Alonso. A Sparse Multicover Bifiltration of Linear Size. In 41st International Symposium on Computational Geometry (SoCG 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 332, pp. 6:1-6:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{alonso:LIPIcs.SoCG.2025.6,
  author =	{Alonso, \'{A}ngel Javier},
  title =	{{A Sparse Multicover Bifiltration of Linear Size}},
  booktitle =	{41st International Symposium on Computational Geometry (SoCG 2025)},
  pages =	{6:1--6:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-370-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{332},
  editor =	{Aichholzer, Oswin and Wang, Haitao},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2025.6},
  URN =		{urn:nbn:de:0030-drops-231587},
  doi =		{10.4230/LIPIcs.SoCG.2025.6},
  annote =	{Keywords: Multicover, Approximation, Sparsification, Multiparameter persistence}
}

Document

DOI: 10.4230/LIPIcs.SoCG.2025.14

Extremal Betti Numbers and Persistence in Flag Complexes

Authors: Lies Beers and Magnus Bakke Botnan

Published in: LIPIcs, Volume 332, 41st International Symposium on Computational Geometry (SoCG 2025)

Abstract

We investigate several problems concerning extremal Betti numbers and persistence in filtrations of flag complexes. For graphs on n vertices, we show that β_k(X(G)) is maximal when G = 𝒯_{n,k+1}, the Turán graph on k+1 partition classes, where X(G) denotes the flag complex of G. Building on this, we construct an edgewise (one edge at a time) filtration 𝒢 = G₁ ⊆ ⋯ ⊆ 𝒯_{n,k+1} for which β_k(X(G_i)) is maximal for all graphs on n vertices and i edges. Moreover, the persistence barcode ℬ_k(X(G)) achieves a maximal number of intervals, and total persistence, among all edgewise filtrations with |E(𝒯_{n,k+1})| edges. For k = 1, we consider edgewise filtrations of the complete graph K_n. We show that the maximal number of intervals in the persistence barcode is obtained precisely when G_{⌈n/2⌉ ⋅ ⌊n/2⌋} = 𝒯_{n,2}. Among such filtrations, we characterize those achieving maximal total persistence. We further show that no filtration can optimize β₁(X(G_i)) for all i, and conjecture that our filtrations maximize the total persistence over all edgewise filtrations of K_n.

Cite as

Lies Beers and Magnus Bakke Botnan. Extremal Betti Numbers and Persistence in Flag Complexes. In 41st International Symposium on Computational Geometry (SoCG 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 332, pp. 14:1-14:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{beers_et_al:LIPIcs.SoCG.2025.14,
  author =	{Beers, Lies and Bakke Botnan, Magnus},
  title =	{{Extremal Betti Numbers and Persistence in Flag Complexes}},
  booktitle =	{41st International Symposium on Computational Geometry (SoCG 2025)},
  pages =	{14:1--14:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-370-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{332},
  editor =	{Aichholzer, Oswin and Wang, Haitao},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2025.14},
  URN =		{urn:nbn:de:0030-drops-231668},
  doi =		{10.4230/LIPIcs.SoCG.2025.14},
  annote =	{Keywords: Topological data analysis, Extremal graph theory}
}

Document

DOI: 10.4230/LIPIcs.SoCG.2025.35

A Theory of Sub-Barcodes

Authors: Oliver A. Chubet, Kirk P. Gardner, and Donald R. Sheehy

Published in: LIPIcs, Volume 332, 41st International Symposium on Computational Geometry (SoCG 2025)

Abstract

The primary tool in topological data analysis (TDA) is persistent homology, which involves computing a barcode - often from point-cloud or scalar field data - that serves as a topological signature for the underlying function. In this work, we introduce sub-barcodes and show how they arise naturally from factorizations of persistence module homomorphisms. We show that, as a partial order induced by factorizations, the relation of being a sub-barcode is strictly stronger than the rank invariant, and we apply sub-barcode theory to the problem of inferring information about the barcode of an unknown Lipschitz function from samples. The advantage of this approach is that it permits strong guarantees - with no noise - while requiring no sampling assumptions, and the resulting barcode is guaranteed to be a sub-barcode of every Lipschitz function that agrees with the data. We also present an algorithmic theory that allows for the efficient approximation of sub-barcodes using filtered Delaunay triangulations for Euclidean inputs.

Cite as

Oliver A. Chubet, Kirk P. Gardner, and Donald R. Sheehy. A Theory of Sub-Barcodes. In 41st International Symposium on Computational Geometry (SoCG 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 332, pp. 35:1-35:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{chubet_et_al:LIPIcs.SoCG.2025.35,
  author =	{Chubet, Oliver A. and Gardner, Kirk P. and Sheehy, Donald R.},
  title =	{{A Theory of Sub-Barcodes}},
  booktitle =	{41st International Symposium on Computational Geometry (SoCG 2025)},
  pages =	{35:1--35:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-370-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{332},
  editor =	{Aichholzer, Oswin and Wang, Haitao},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2025.35},
  URN =		{urn:nbn:de:0030-drops-231873},
  doi =		{10.4230/LIPIcs.SoCG.2025.35},
  annote =	{Keywords: Topology, Topological Data Analysis, Persistent Homology, Persistence Modules, Barcodes, Sub-barcodes, Factorizations, Lipschitz Extensions}
}

Document

DOI: 10.4230/LIPIcs.SoCG.2025.64

Super-Polynomial Growth of the Generalized Persistence Diagram

Authors: Donghan Kim, Woojin Kim, and Wonjun Lee

Published in: LIPIcs, Volume 332, 41st International Symposium on Computational Geometry (SoCG 2025)

Abstract

The Generalized Persistence Diagram (GPD) for multi-parameter persistence naturally extends the classical notion of persistence diagram for one-parameter persistence. However, unlike its classical counterpart, computing the GPD remains a significant challenge. The main hurdle is that, while the GPD is defined as the Möbius inversion of the Generalized Rank Invariant (GRI), computing the GRI is intractable due to the formidable size of its domain, i.e., the set of all connected and convex subsets in a finite grid in ℝ^d with d ≥ 2. This computational intractability suggests seeking alternative approaches to computing the GPD. In order to study the complexity associated to computing the GPD, it is useful to consider its classical one-parameter counterpart, where for a filtration of a simplicial complex with n simplices, its persistence diagram contains at most n points. This observation leads to the question: Given a d-parameter simplicial filtration, could the cardinality of its GPD (specifically, the support of the GPD) also be bounded by a polynomial in the number of simplices in the filtration? This is the case for d = 1, where we compute the persistence diagram directly at the simplicial filtration level. If this were also the case for d ≥ 2, it might be possible to compute the GPD directly and much more efficiently without relying on the GRI. We show that the answer to the question above is negative, demonstrating the inherent difficulty of computing the GPD. More specifically, we construct a sequence of d-parameter simplicial filtrations where the cardinalities of their GPDs are not bounded by any polynomial in the number of simplices. Furthermore, we show that several commonly used methods for constructing multi-parameter filtrations can give rise to such "wild" filtrations.

Cite as

Donghan Kim, Woojin Kim, and Wonjun Lee. Super-Polynomial Growth of the Generalized Persistence Diagram. In 41st International Symposium on Computational Geometry (SoCG 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 332, pp. 64:1-64:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{kim_et_al:LIPIcs.SoCG.2025.64,
  author =	{Kim, Donghan and Kim, Woojin and Lee, Wonjun},
  title =	{{Super-Polynomial Growth of the Generalized Persistence Diagram}},
  booktitle =	{41st International Symposium on Computational Geometry (SoCG 2025)},
  pages =	{64:1--64:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-370-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{332},
  editor =	{Aichholzer, Oswin and Wang, Haitao},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2025.64},
  URN =		{urn:nbn:de:0030-drops-232162},
  doi =		{10.4230/LIPIcs.SoCG.2025.64},
  annote =	{Keywords: Persistent homology, M\"{o}bius inversion, Multiparameter persistence, Generalized persistence diagram, Generalized rank invariant}
}

Document

DOI: 10.4230/LIPIcs.SoCG.2025.69

Computing Betti Tables and Minimal Presentations of Zero-Dimensional Persistent Homology

Authors: Dmitriy Morozov and Luis Scoccola

Published in: LIPIcs, Volume 332, 41st International Symposium on Computational Geometry (SoCG 2025)

Abstract

The Betti tables of a multigraded module encode the grades at which there is an algebraic change in the module. Multigraded modules show up in many areas of pure and applied mathematics, and in particular in topological data analysis, where they are known as persistence modules, and where their Betti tables describe the places at which the homology of filtered simplicial complexes changes. Although Betti tables of singly and bigraded modules are already being used in applications of topological data analysis, their computation in the bigraded case (which relies on an algorithm that is cubic in the size of the filtered simplicial complex) is a bottleneck when working with large datasets. We show that, in the special case of 0-dimensional homology (relevant for clustering and graph classification) Betti tables of bigraded modules can be computed in log-linear time. We also consider the problem of computing minimal presentations, and show that minimal presentations of 0-dimensional persistent homology can be computed in quadratic time, regardless of the grading poset.

Cite as

Dmitriy Morozov and Luis Scoccola. Computing Betti Tables and Minimal Presentations of Zero-Dimensional Persistent Homology. In 41st International Symposium on Computational Geometry (SoCG 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 332, pp. 69:1-69:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{morozov_et_al:LIPIcs.SoCG.2025.69,
  author =	{Morozov, Dmitriy and Scoccola, Luis},
  title =	{{Computing Betti Tables and Minimal Presentations of Zero-Dimensional Persistent Homology}},
  booktitle =	{41st International Symposium on Computational Geometry (SoCG 2025)},
  pages =	{69:1--69:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-370-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{332},
  editor =	{Aichholzer, Oswin and Wang, Haitao},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2025.69},
  URN =		{urn:nbn:de:0030-drops-232219},
  doi =		{10.4230/LIPIcs.SoCG.2025.69},
  annote =	{Keywords: Multiparameter persistence, Zero-dimensional homology, Minimal presentation, Betti table}
}

Document

DOI: 10.4230/LIPIcs.SoCG.2025.68

Persistent (Co)Homology in Matrix Multiplication Time

Authors: Dmitriy Morozov and Primoz Skraba

Published in: LIPIcs, Volume 332, 41st International Symposium on Computational Geometry (SoCG 2025)

Abstract

Most algorithms for computing persistent homology do so by tracking cycles that represent homology classes. There are many choices of such cycles, and specific choices have found different uses in applications. Although it is known that persistence diagrams can be computed in matrix multiplication time for the more general case of zigzag persistent homology [Milosavljević et al., 2011], it is not clear how to extract cycle representatives, especially if specific representatives are desired. In this paper, we provide the same matrix multiplication bound for computing representatives for the two choices common in applications in the case of ordinary persistent (co)homology. We first provide a fast version of the reduction algorithm, which is simpler than the algorithm in [Milosavljević et al., 2011], but returns a different set of representatives than the standard algorithm [Edelsbrunner et al., 2002]. We then give a fast version of a variant called the row algorithm [De Silva et al., 2011], which returns the same representatives as the standard algorithm.

Cite as

Dmitriy Morozov and Primoz Skraba. Persistent (Co)Homology in Matrix Multiplication Time. In 41st International Symposium on Computational Geometry (SoCG 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 332, pp. 68:1-68:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{morozov_et_al:LIPIcs.SoCG.2025.68,
  author =	{Morozov, Dmitriy and Skraba, Primoz},
  title =	{{Persistent (Co)Homology in Matrix Multiplication Time}},
  booktitle =	{41st International Symposium on Computational Geometry (SoCG 2025)},
  pages =	{68:1--68:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-370-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{332},
  editor =	{Aichholzer, Oswin and Wang, Haitao},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2025.68},
  URN =		{urn:nbn:de:0030-drops-232204},
  doi =		{10.4230/LIPIcs.SoCG.2025.68},
  annote =	{Keywords: persistent homology, matrix multiplication, cycle representatives}
}

Document

DOI: 10.4230/LIPIcs.SoCG.2025.10

Steinhaus Filtration and Stable Paths in the Mapper

Authors: Dustin L. Arendt, Matthew Broussard, Bala Krishnamoorthy, Nathaniel Saul, and Amber Thrall

Published in: LIPIcs, Volume 332, 41st International Symposium on Computational Geometry (SoCG 2025)

Abstract

We define a new filtration called the Steinhaus filtration built from a single cover based on a generalized Steinhaus distance, a generalization of Jaccard distance. The homology persistence module of a Steinhaus filtration with infinitely many cover elements may not be q-tame, even when the covers are in a totally bounded space. While this may pose a challenge to derive stability results, we show that the Steinhaus filtration is stable when the cover is finite. We show that while the Čech and Steinhaus filtrations are not isomorphic in general, they are isomorphic for a finite point set in dimension one. Furthermore, the VR filtration completely determines the 1-skeleton of the Steinhaus filtration in arbitrary dimension. We then develop a language and theory for stable paths within the Steinhaus filtration. We demonstrate how the framework can be applied to several applications where a standard metric may not be defined but a cover is readily available. We introduce a new perspective for modeling recommendation system datasets. As an example, we look at a movies dataset and we find the stable paths identified in our framework represent a sequence of movies constituting a gentle transition and ordering from one genre to another. For explainable machine learning, we apply the Mapper algorithm for model induction by building a filtration from a single Mapper complex, and provide explanations in the form of stable paths between subpopulations. For illustration, we build a Mapper complex from a supervised machine learning model trained on the FashionMNIST dataset. Stable paths in the Steinhaus filtration provide improved explanations of relationships between subpopulations of images.

Cite as

Dustin L. Arendt, Matthew Broussard, Bala Krishnamoorthy, Nathaniel Saul, and Amber Thrall. Steinhaus Filtration and Stable Paths in the Mapper. In 41st International Symposium on Computational Geometry (SoCG 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 332, pp. 10:1-10:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{arendt_et_al:LIPIcs.SoCG.2025.10,
  author =	{Arendt, Dustin L. and Broussard, Matthew and Krishnamoorthy, Bala and Saul, Nathaniel and Thrall, Amber},
  title =	{{Steinhaus Filtration and Stable Paths in the Mapper}},
  booktitle =	{41st International Symposium on Computational Geometry (SoCG 2025)},
  pages =	{10:1--10:21},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-370-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{332},
  editor =	{Aichholzer, Oswin and Wang, Haitao},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2025.10},
  URN =		{urn:nbn:de:0030-drops-231625},
  doi =		{10.4230/LIPIcs.SoCG.2025.10},
  annote =	{Keywords: Cover and nerve, Jaccard distance, persistence stability, Mapper, recommender systems, explainable machine learning}
}

Document

DOI: 10.4230/LIPIcs.SoCG.2025.15

When Distances Lie: Euclidean Embeddings in the Presence of Outliers and Distance Violations

Authors: Matthias Bentert, Fedor V. Fomin, Petr A. Golovach, M. S. Ramanujan, and Saket Saurabh

Published in: LIPIcs, Volume 332, 41st International Symposium on Computational Geometry (SoCG 2025)

Abstract

Distance geometry explores the properties of distance spaces that can be exactly represented as the pairwise Euclidean distances between points in ℝ^d (d ≥ 1), or equivalently, distance spaces that can be isometrically embedded in ℝ^d. In this work, we investigate whether a distance space can be isometrically embedded in ℝ^d after applying a limited number of modifications. Specifically, we focus on two types of modifications: outlier deletion (removing points) and distance modification (adjusting distances between points). The central problem, Euclidean Embedding Editing, asks whether an input distance space on n points can be transformed, using at most k modifications, into a space that is isometrically embeddable in ℝ^d. We present several fixed-parameter tractable (FPT) and approximation algorithms for this problem. Our first result is an algorithm that solves Euclidean Embedding Editing in time (dk)^𝒪(d+k) + n^𝒪(1). The core subroutine of this algorithm, which is of independent interest, is a polynomial-time method for compressing the input distance space into an equivalent instance of Euclidean Embedding Editing with 𝒪((dk)²) points. For the special but important case of Euclidean Embedding Editing where only outlier deletions are allowed, we improve the parameter dependence of the FPT algorithm and obtain a running time of min{(d+3)^k, 2^{d+k}} ⋅ n^𝒪(1). Additionally, we provide an FPT-approximation algorithm for this problem, which outputs a set of at most 2 ⋅ Opt outliers in time 2^d ⋅ n^{𝒪(1)}. This 2-approximation algorithm improves upon the previous (3+ε)-approximation algorithm by Sidiropoulos, Wang, and Wang [SODA '17]. Furthermore, we complement our algorithms with hardness results motivating our choice of parameterizations.

Cite as

Matthias Bentert, Fedor V. Fomin, Petr A. Golovach, M. S. Ramanujan, and Saket Saurabh. When Distances Lie: Euclidean Embeddings in the Presence of Outliers and Distance Violations. In 41st International Symposium on Computational Geometry (SoCG 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 332, pp. 15:1-15:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{bentert_et_al:LIPIcs.SoCG.2025.15,
  author =	{Bentert, Matthias and Fomin, Fedor V. and Golovach, Petr A. and Ramanujan, M. S. and Saurabh, Saket},
  title =	{{When Distances Lie: Euclidean Embeddings in the Presence of Outliers and Distance Violations}},
  booktitle =	{41st International Symposium on Computational Geometry (SoCG 2025)},
  pages =	{15:1--15:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-370-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{332},
  editor =	{Aichholzer, Oswin and Wang, Haitao},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2025.15},
  URN =		{urn:nbn:de:0030-drops-231672},
  doi =		{10.4230/LIPIcs.SoCG.2025.15},
  annote =	{Keywords: Parameterized Complexity, Euclidean Embedding, FPT-approximation}
}

Document

DOI: 10.4230/LIPIcs.SoCG.2025.78

Efficient Greedy Discrete Subtrajectory Clustering

Authors: Ivor van der Hoog, Lara Ost, Eva Rotenberg, and Daniel Rutschmann

Published in: LIPIcs, Volume 332, 41st International Symposium on Computational Geometry (SoCG 2025)

Abstract

We cluster a set of trajectories 𝒯 using subtrajectories of 𝒯. We require for a clustering C that any two subtrajectories (𝒯[a, b], 𝒯[c, d]) in a cluster have disjoint intervals [a,b] and [c, d]. Clustering quality may be measured by the number of clusters, the number of vertices of 𝒯 that are absent from the clustering, and by the Fréchet distance between subtrajectories in a cluster. A Δ-cluster of 𝒯 is a cluster 𝒫 of subtrajectories of 𝒯 with a centre P ∈ 𝒫, where all subtrajectories in 𝒫 have Fréchet distance at most Δ to P. Buchin, Buchin, Gudmundsson, Löffler and Luo present two O(n² + n m 𝓁)-time algorithms: SC(max, 𝓁, Δ, 𝒯) computes a single Δ-cluster where P has at least 𝓁 vertices and maximises the cardinality m of 𝒫. SC(m, max, Δ, 𝒯) computes a single Δ-cluster where 𝒫 has cardinality m and maximises the complexity 𝓁 of P. In this paper, which is a mixture of algorithms engineering and theoretical insights, we use such maximum-cardinality clusters in a greedy clustering algorithm. We first provide an efficient implementation of SC(max, 𝓁, Δ, 𝒯) and SC(m, max, Δ, 𝒯) that significantly outperforms previous implementations. Next, we use these functions as a subroutine in a greedy clustering algorithm, which performs well when compared to existing subtrajectory clustering algorithms on real-world data. Finally, we observe that, for fixed Δ and 𝒯, these two functions always output a point on the Pareto front of some bivariate function θ(𝓁, m). We design a new algorithm PSC(Δ, 𝒯) that in O(n² log⁴ n) time computes a 2-approximation of this Pareto front. This yields a broader set of candidate clusters, with comparable quality to the output of the previous functions. We show that using PSC(Δ, 𝒯) as a subroutine improves the clustering quality and performance even further.

Cite as

Ivor van der Hoog, Lara Ost, Eva Rotenberg, and Daniel Rutschmann. Efficient Greedy Discrete Subtrajectory Clustering. In 41st International Symposium on Computational Geometry (SoCG 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 332, pp. 78:1-78:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{vanderhoog_et_al:LIPIcs.SoCG.2025.78,
  author =	{van der Hoog, Ivor and Ost, Lara and Rotenberg, Eva and Rutschmann, Daniel},
  title =	{{Efficient Greedy Discrete Subtrajectory Clustering}},
  booktitle =	{41st International Symposium on Computational Geometry (SoCG 2025)},
  pages =	{78:1--78:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-370-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{332},
  editor =	{Aichholzer, Oswin and Wang, Haitao},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2025.78},
  URN =		{urn:nbn:de:0030-drops-232308},
  doi =		{10.4230/LIPIcs.SoCG.2025.78},
  annote =	{Keywords: Algorithms engineering, Fr\'{e}chet distance, subtrajectory clustering}
}

Document

DOI: 10.4230/DagRep.14.2.206

Applied and Combinatorial Topology (Dagstuhl Seminar 24092)

Authors: Paweł Dłotko, Dmitry Feichtner-Kozlov, Anastasios Stefanou, Yusu Wang, and Jan F Senge

Published in: Dagstuhl Reports, Volume 14, Issue 2 (2024)

Abstract

This report documents the program and the outcomes of Dagstuhl Seminar 24092 "Applied and Combinatorial Topology". The last twenty years of rapid development of Topological Data Analysis (TDA) have shown the need to analyze the shape of data to better understand the data. Since an explosion of new ideas in 2000’ including those of Persistent Homology and Mapper Algorithms, the community rushed to solve detailed theoretical questions related to the existing invariants. However, topology and geometry still have much to offer to the data science community. New tools and techniques are within reach, waiting to be brought over the fence to enrich our understanding and potential to analyze data. At the same time, the fields of Discrete Morse Theory (DMT) and Combinatorial Topology (CT) are developed in parallel with no strong connection to data-intensive TDA or to other statistical pipelines (e.g. machine learning). This Dagstuhl Seminar brought together a number of experts in Discrete Morse Theory, Combinatorial Topology, Topological Data Analysis, and Statistics to (i) enhance the existing interactions between these fields on the one hand, and (ii) discuss the possibilities of adopting new invariants from algebra, geometry, and topology; in particular inspired by continuous and discrete Morse theory and combinatorial topology; to analyze and better understand the notion of shape of the data. The different talks in the seminar included both introductory talks as well as current research expositions and proved fruitful for the open problem and break-out sessions. The topics that were discussed included 1) algorithmic aspects for efficient computation as well as Morse theoretic approximations 2) topological information gain of multiparameter persistence 3) understanding the magnitude function and its relation to graph problems.

Cite as

Paweł Dłotko, Dmitry Feichtner-Kozlov, Anastasios Stefanou, Yusu Wang, and Jan F Senge. Applied and Combinatorial Topology (Dagstuhl Seminar 24092). In Dagstuhl Reports, Volume 14, Issue 2, pp. 206-239, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@Article{dlotko_et_al:DagRep.14.2.206,
  author =	{D{\l}otko, Pawe{\l} and Feichtner-Kozlov, Dmitry and Stefanou, Anastasios and Wang, Yusu and Senge, Jan F},
  title =	{{Applied and Combinatorial Topology (Dagstuhl Seminar 24092)}},
  pages =	{206--239},
  journal =	{Dagstuhl Reports},
  ISSN =	{2192-5283},
  year =	{2024},
  volume =	{14},
  number =	{2},
  editor =	{D{\l}otko, Pawe{\l} and Feichtner-Kozlov, Dmitry and Stefanou, Anastasios and Wang, Yusu and Senge, Jan F},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/DagRep.14.2.206},
  URN =		{urn:nbn:de:0030-drops-205059},
  doi =		{10.4230/DagRep.14.2.206},
  annote =	{Keywords: Applied Topology, Topological Data Analysis, Discrete Morse Theory, Combinatorial Topology, Statistics}
}

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