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Small-Space LCE Data Structure with Constant-Time Queries

Authors Yuka Tanimura, Takaaki Nishimoto, Hideo Bannai, Shunsuke Inenaga, Masayuki Takeda

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  • longest common extension
  • truncated suffix trees
  • t-covers

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Abstract

The longest common extension (LCE) problem is to preprocess a given string w of length n so that the length of the longest common prefix between suffixes of w that start at any two given positions is answered quickly. In this paper, we present a data structure of O(z \tau^2 + \frac{n}{\tau}) words of space which answers LCE queries in O(1) time and can be built in O(n \log \sigma) time, where 1 \leq \tau \leq \sqrt{n} is a parameter, z is the size of the Lempel-Ziv 77 factorization of w and \sigma is the alphabet size. The proposed LCE data structure not access the input string w when answering queries, and thus w can be deleted after preprocessing. On top of this main result, we obtain further results using (variants of) our LCE data structure, which include the following:
- For highly repetitive strings where the z\tau^2 term is dominated by \frac{n}{\tau}, we obtain a constant-time and sub-linear space LCE query data structure.
- Even when the input string is not well compressible via Lempel-Ziv 77 factorization, we still can obtain a constant-time and sub-linear space LCE data structure for suitable \tau and for \sigma \leq 2^{o(\log n)}.
- The time-space trade-off lower bounds for the LCE problem by Bille et al. [J. Discrete Algorithms, 25:42-50, 2014] and by Kosolobov [CoRR, abs/1611.02891, 2016] do not apply in some cases with our LCE data structure.

Cite As Get BibTex

Yuka Tanimura, Takaaki Nishimoto, Hideo Bannai, Shunsuke Inenaga, and Masayuki Takeda. Small-Space LCE Data Structure with Constant-Time Queries. In 42nd International Symposium on Mathematical Foundations of Computer Science (MFCS 2017). Leibniz International Proceedings in Informatics (LIPIcs), Volume 83, pp. 10:1-10:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2017) https://doi.org/10.4230/LIPIcs.MFCS.2017.10

Author Details

Yuka Tanimura
Takaaki Nishimoto
Hideo Bannai
Shunsuke Inenaga
Masayuki Takeda

References

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