@InProceedings{huber_et_al:DagSemProc.05471.1,
author = {Huber, Christian G. and Kohlbacher, Oliver and Reinert, Knut},
title = {{05471 Abstract Collection – Computational Proteomics}},
booktitle = {Computational Proteomics},
pages = {1--15},
series = {Dagstuhl Seminar Proceedings (DagSemProc)},
ISSN = {1862-4405},
year = {2006},
volume = {5471},
editor = {Christian G. Huber and Oliver Kohlbacher and Knut Reinert},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/DagSemProc.05471.1},
URN = {urn:nbn:de:0030-drops-5569},
doi = {10.4230/DagSemProc.05471.1},
annote = {Keywords: Proteomics, mass spectrometry, MALDI, HPLC-MS, differential expression, clinical proteomics, quantitation, identification}
}
@InProceedings{huber_et_al:DagSemProc.05471.2,
author = {Huber, Christian G. and Kohlbacher, Oliver and Reinert, Knut},
title = {{05471 Executive Summary – Computational Proteomics}},
booktitle = {Computational Proteomics},
series = {Dagstuhl Seminar Proceedings (DagSemProc)},
ISSN = {1862-4405},
year = {2006},
volume = {5471},
editor = {Christian G. Huber and Oliver Kohlbacher and Knut Reinert},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/DagSemProc.05471.2},
URN = {urn:nbn:de:0030-drops-5406},
doi = {10.4230/DagSemProc.05471.2},
annote = {Keywords: Proteomics, mass spectrometry, MALDI, HPLC-MS, differential expression, clinical proteomics, quantitation, identification}
}
@InProceedings{sturm_et_al:DagSemProc.05471.3,
author = {Sturm, Marc and Quinten, Sascha and Huber, Christian G. and Kohlbacher, Oliver},
title = {{A machine learning approach for prediction of DNA and peptide HPLC retention times}},
booktitle = {Computational Proteomics},
pages = {1--5},
series = {Dagstuhl Seminar Proceedings (DagSemProc)},
ISSN = {1862-4405},
year = {2006},
volume = {5471},
editor = {Christian G. Huber and Oliver Kohlbacher and Knut Reinert},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/DagSemProc.05471.3},
URN = {urn:nbn:de:0030-drops-5484},
doi = {10.4230/DagSemProc.05471.3},
annote = {Keywords: High performance liquid chromatography, mass spectrometry, retention time, prediction, peptide, DNA, support vector regression}
}
@InProceedings{gropl:DagSemProc.05471.4,
author = {Gr\"{o}pl, Clemens},
title = {{An Algorithm for Feature Finding in LC/MS Raw Data}},
booktitle = {Computational Proteomics},
pages = {1--9},
series = {Dagstuhl Seminar Proceedings (DagSemProc)},
ISSN = {1862-4405},
year = {2006},
volume = {5471},
editor = {Christian G. Huber and Oliver Kohlbacher and Knut Reinert},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/DagSemProc.05471.4},
URN = {urn:nbn:de:0030-drops-5341},
doi = {10.4230/DagSemProc.05471.4},
annote = {Keywords: Computational Proteomics, Quantitative Analysis, Liquid Chromatography, Mass Spectrometry, Algorithm, Software}
}
@InProceedings{bocker_et_al:DagSemProc.05471.5,
author = {B\"{o}cker, Sebastian and M\"{a}kinen, Veli},
title = {{Combinatorial Approaches for Mass Spectra Recalibration}},
booktitle = {Computational Proteomics},
pages = {1--6},
series = {Dagstuhl Seminar Proceedings (DagSemProc)},
ISSN = {1862-4405},
year = {2006},
volume = {5471},
editor = {Christian G. Huber and Oliver Kohlbacher and Knut Reinert},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/DagSemProc.05471.5},
URN = {urn:nbn:de:0030-drops-5455},
doi = {10.4230/DagSemProc.05471.5},
annote = {Keywords: Mass spectrometry recalibration computational geometry}
}
@InProceedings{delmotte_et_al:DagSemProc.05471.6,
author = {Delmotte, Nathana\"{e}l and Mayr, Bettina and Leinenbach, Andreas and Reinert, Knut and Kohlbacher, Oliver and Klein, Christoph and Huber, Christian G.},
title = {{Evaluation of LC-MS data for the absolute quantitative analysis of marker proteins}},
booktitle = {Computational Proteomics},
pages = {1--5},
series = {Dagstuhl Seminar Proceedings (DagSemProc)},
ISSN = {1862-4405},
year = {2006},
volume = {5471},
editor = {Christian G. Huber and Oliver Kohlbacher and Knut Reinert},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/DagSemProc.05471.6},
URN = {urn:nbn:de:0030-drops-5397},
doi = {10.4230/DagSemProc.05471.6},
annote = {Keywords: RP-HPLC, monolith, Mascot, Myoglobin, Absolute quantitation, Serum}
}
@InProceedings{schluter:DagSemProc.05471.7,
author = {Schl\"{u}ter, Hartmut},
title = {{Future Challenges in Proteomics}},
booktitle = {Computational Proteomics},
pages = {1--5},
series = {Dagstuhl Seminar Proceedings (DagSemProc)},
ISSN = {1862-4405},
year = {2006},
volume = {5471},
editor = {Christian G. Huber and Oliver Kohlbacher and Knut Reinert},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/DagSemProc.05471.7},
URN = {urn:nbn:de:0030-drops-5449},
doi = {10.4230/DagSemProc.05471.7},
annote = {Keywords: Protein species, proteome, identification}
}
@InProceedings{toll_et_al:DagSemProc.05471.8,
author = {Toll, Hansj\"{o}rg and Berger, Peter and Hofmann, Andreas and Hildebrandt, Andreas and Oberacher, Herbert and Lenhof, Hans Peter and Huber, Christian G.},
title = {{Glycosylation Patterns of Proteins Studied by Liquid Chromatography-Mass Spectrometry and Bioinformatic Tools}},
booktitle = {Computational Proteomics},
pages = {1--6},
series = {Dagstuhl Seminar Proceedings (DagSemProc)},
ISSN = {1862-4405},
year = {2006},
volume = {5471},
editor = {Christian G. Huber and Oliver Kohlbacher and Knut Reinert},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/DagSemProc.05471.8},
URN = {urn:nbn:de:0030-drops-5431},
doi = {10.4230/DagSemProc.05471.8},
annote = {Keywords: Liquid chromatography, mass spectrometry, glycoproteins, glycosylation, peak annotation}
}
@InProceedings{lange_et_al:DagSemProc.05471.9,
author = {Lange, Eva and Gr\"{o}pl, Clemens and Kohlbacher, Oliver and Hildebrandt, Andreas},
title = {{High-accuracy peak picking of proteomics data}},
booktitle = {Computational Proteomics},
pages = {1--9},
series = {Dagstuhl Seminar Proceedings (DagSemProc)},
ISSN = {1862-4405},
year = {2006},
volume = {5471},
editor = {Christian G. Huber and Oliver Kohlbacher and Knut Reinert},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/DagSemProc.05471.9},
URN = {urn:nbn:de:0030-drops-5358},
doi = {10.4230/DagSemProc.05471.9},
annote = {Keywords: Mass spectrometry, peak detection, peak picking}
}
@InProceedings{tholey:DagSemProc.05471.10,
author = {Tholey, Andreas},
title = {{MALDI Mass Spectrometry for Quantitative Proteomics – Approaches, Scopes and Limitations}},
booktitle = {Computational Proteomics},
pages = {1--11},
series = {Dagstuhl Seminar Proceedings (DagSemProc)},
ISSN = {1862-4405},
year = {2006},
volume = {5471},
editor = {Christian G. Huber and Oliver Kohlbacher and Knut Reinert},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/DagSemProc.05471.10},
URN = {urn:nbn:de:0030-drops-5367},
doi = {10.4230/DagSemProc.05471.10},
annote = {Keywords: MALDI, mass spectrometry, quantification, ionic liquid matrices}
}
@InProceedings{schley_et_al:DagSemProc.05471.11,
author = {Schley, Christian and Altmeyer, Matthias and M\"{u}ller, Rolf and Huber, Christian G.},
title = {{MULTIDIMENSIONAL PEPTIDE/PROTEIN ANALYSIS AND IDENTIFICATION BY SEQUENCE DATABASE SEARCH USING MASS SPECTROMETRIC DATA}},
booktitle = {Computational Proteomics},
pages = {1--8},
series = {Dagstuhl Seminar Proceedings (DagSemProc)},
ISSN = {1862-4405},
year = {2006},
volume = {5471},
editor = {Christian G. Huber and Oliver Kohlbacher and Knut Reinert},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/DagSemProc.05471.11},
URN = {urn:nbn:de:0030-drops-5389},
doi = {10.4230/DagSemProc.05471.11},
annote = {Keywords: Multidimensional chromatography, proteome analysis, monolithic column, tandem mass spectrometry}
}
@InProceedings{conrad:DagSemProc.05471.12,
author = {Conrad, Tim},
title = {{New statistical algorithms for clinical proteomics}},
booktitle = {Computational Proteomics},
pages = {1--2},
series = {Dagstuhl Seminar Proceedings (DagSemProc)},
ISSN = {1862-4405},
year = {2006},
volume = {5471},
editor = {Christian G. Huber and Oliver Kohlbacher and Knut Reinert},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/DagSemProc.05471.12},
URN = {urn:nbn:de:0030-drops-5427},
doi = {10.4230/DagSemProc.05471.12},
annote = {Keywords: MS, Mass Spectrometry, MALDI-TOF, Fingerprinting, Proteomics}
}
@InProceedings{reinert_et_al:DagSemProc.05471.13,
author = {Reinert, Knut and Kohlbacher, Oliver and Gr\"{o}pl, Clemens and Lange, Eva and Schulz-Trieglaff, Ole and Sturm, Marc and Pfeifer, Nico},
title = {{OpenMS - A Framework for Quantitative HPLC/MS-Based Proteomics}},
booktitle = {Computational Proteomics},
pages = {1--7},
series = {Dagstuhl Seminar Proceedings (DagSemProc)},
ISSN = {1862-4405},
year = {2006},
volume = {5471},
editor = {Christian G. Huber and Oliver Kohlbacher and Knut Reinert},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/DagSemProc.05471.13},
URN = {urn:nbn:de:0030-drops-5463},
doi = {10.4230/DagSemProc.05471.13},
annote = {Keywords: Proteomics, C++, Differential expression}
}
@InProceedings{schulztrieglaff:DagSemProc.05471.14,
author = {Schulz-Trieglaff, Ole},
title = {{Software platforms for quantitative proteomics}},
booktitle = {Computational Proteomics},
pages = {1--4},
series = {Dagstuhl Seminar Proceedings (DagSemProc)},
ISSN = {1862-4405},
year = {2006},
volume = {5471},
editor = {Christian G. Huber and Oliver Kohlbacher and Knut Reinert},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/DagSemProc.05471.14},
URN = {urn:nbn:de:0030-drops-5376},
doi = {10.4230/DagSemProc.05471.14},
annote = {Keywords: Proteomics, mass spetrometry, quantitative measurements}
}
@InProceedings{lehmann_et_al:DagSemProc.05471.15,
author = {Lehmann, Wolf D. and Wei, Junhua and Rappsilber, Juri and Salek, Mojiborahman},
title = {{The Peptide MS/MS-Fragmentome: A Set of Predictable Fragment Ions with Highly Redundant Sequence Information}},
booktitle = {Computational Proteomics},
pages = {1--4},
series = {Dagstuhl Seminar Proceedings (DagSemProc)},
ISSN = {1862-4405},
year = {2006},
volume = {5471},
editor = {Christian G. Huber and Oliver Kohlbacher and Knut Reinert},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/DagSemProc.05471.15},
URN = {urn:nbn:de:0030-drops-5472},
doi = {10.4230/DagSemProc.05471.15},
annote = {Keywords: Peptides, collision-induced dissociation, tandem mass spectrometry, electrospray, peptide fragment ions}
}
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