@InProceedings{ashburner_et_al:DagSemProc.08131.1,
author = {Ashburner, Michael and Leser, Ulf and Rebholz-Schuhmann, Dietrich},
title = {{08131 Executive Summary – Ontologies and Text Mining for Life Sciences : Current Status and Future Perspectives}},
booktitle = {Ontologies and Text Mining for Life Sciences : Current Status and Future Perspectives},
pages = {1--5},
series = {Dagstuhl Seminar Proceedings (DagSemProc)},
ISSN = {1862-4405},
year = {2008},
volume = {8131},
editor = {Michael Ashburner and Ulf Leser and Dietrich Rebholz-Schuhmann},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.08131.1},
URN = {urn:nbn:de:0030-drops-15234},
doi = {10.4230/DagSemProc.08131.1},
annote = {Keywords: Text Mining, natural language processing, ontologies, ontology design, machine learning, bioinformatics, medical informatics, knowledge management}
}
@InProceedings{schlicker_et_al:DagSemProc.08131.2,
author = {Schlicker, Andreas and Ram{\'\i}rez, Fidel and Rahnenf\"{u}hrer, J\"{o}rg and Huthmacher, Carola and Pironti, Alejandro and Domingues, Francisco S. and Lengauer, Thomas and Albrecht, Mario},
title = {{Applications of semantic similarity measures}},
booktitle = {Ontologies and Text Mining for Life Sciences : Current Status and Future Perspectives},
pages = {1--1},
series = {Dagstuhl Seminar Proceedings (DagSemProc)},
ISSN = {1862-4405},
year = {2008},
volume = {8131},
editor = {Michael Ashburner and Ulf Leser and Dietrich Rebholz-Schuhmann},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.08131.2},
URN = {urn:nbn:de:0030-drops-15198},
doi = {10.4230/DagSemProc.08131.2},
annote = {Keywords: Semantic similarity, functional similarity, Gene Ontology, domain-domain interactions}
}
@InProceedings{briscoe_et_al:DagSemProc.08131.3,
author = {Briscoe, Ted and Gasperin, Caroline and Lewin, Ian and Vlachos, Andreas},
title = {{Bootstrapping an interactive information extraction system for FlyBase curation}},
booktitle = {Ontologies and Text Mining for Life Sciences : Current Status and Future Perspectives},
pages = {1--1},
series = {Dagstuhl Seminar Proceedings (DagSemProc)},
ISSN = {1862-4405},
year = {2008},
volume = {8131},
editor = {Michael Ashburner and Ulf Leser and Dietrich Rebholz-Schuhmann},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.08131.3},
URN = {urn:nbn:de:0030-drops-15086},
doi = {10.4230/DagSemProc.08131.3},
annote = {Keywords: Biomedical Text Mining, Interactive Information Extraction, Natural Language Processing}
}
@InProceedings{su_et_al:DagSemProc.08131.4,
author = {Su, Jian and Yang, Xiaofeng and Hong, Huaqing and Tateisi, Yuka and Tsujii, Jun'ichi},
title = {{Coreference Resolution in Biomedical Texts: a Machine Learning Approach}},
booktitle = {Ontologies and Text Mining for Life Sciences : Current Status and Future Perspectives},
pages = {1--1},
series = {Dagstuhl Seminar Proceedings (DagSemProc)},
ISSN = {1862-4405},
year = {2008},
volume = {8131},
editor = {Michael Ashburner and Ulf Leser and Dietrich Rebholz-Schuhmann},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.08131.4},
URN = {urn:nbn:de:0030-drops-15220},
doi = {10.4230/DagSemProc.08131.4},
annote = {Keywords: Coreference resolution, biomedical text}
}
@InProceedings{spasic_et_al:DagSemProc.08131.5,
author = {Spasic, Irena and Schober, Daniel and Sansone, Susanna-Assunta and Rebholz-Schuhmann, Dietrich and Kell, Douglas B. and Paton, Norman W.},
title = {{Facilitating the development of controlled vocabularies for metabolomics technologies with text mining}},
booktitle = {Ontologies and Text Mining for Life Sciences : Current Status and Future Perspectives},
series = {Dagstuhl Seminar Proceedings (DagSemProc)},
ISSN = {1862-4405},
year = {2008},
volume = {8131},
editor = {Michael Ashburner and Ulf Leser and Dietrich Rebholz-Schuhmann},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.08131.5},
URN = {urn:nbn:de:0030-drops-15503},
doi = {10.4230/DagSemProc.08131.5},
annote = {Keywords: Text mining, ontology, controlled vocabulary, metabolomics}
}
@InProceedings{dietze_et_al:DagSemProc.08131.6,
author = {Dietze, Heiko and Alexopoulou, Dimitra and Alvers, Michael R. and Barrio-Alvers, Bill and Doms, Andreas and Hakenberg, J\"{o}rg and M\"{o}nnich, Jan and Plake, Conrad and Reischuck, Andreas and Royer, Loic and W\"{a}chter, Thomas and Zschunke, Matthias and Schroeder, Michael},
title = {{GoPubMed: Exploring Pubmed with Ontological Background Knowledge}},
booktitle = {Ontologies and Text Mining for Life Sciences : Current Status and Future Perspectives},
pages = {1--1},
series = {Dagstuhl Seminar Proceedings (DagSemProc)},
ISSN = {1862-4405},
year = {2008},
volume = {8131},
editor = {Michael Ashburner and Ulf Leser and Dietrich Rebholz-Schuhmann},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.08131.6},
URN = {urn:nbn:de:0030-drops-15204},
doi = {10.4230/DagSemProc.08131.6},
annote = {Keywords: Text mining, literature search, Gene Ontology, NLP, ontology, thesaurus, PubMed}
}
@InProceedings{nenadic:DagSemProc.08131.7,
author = {Nenadic, Goran},
title = {{Mining associations and roles: role of feature extraction}},
booktitle = {Ontologies and Text Mining for Life Sciences : Current Status and Future Perspectives},
pages = {1--1},
series = {Dagstuhl Seminar Proceedings (DagSemProc)},
ISSN = {1862-4405},
year = {2008},
volume = {8131},
editor = {Michael Ashburner and Ulf Leser and Dietrich Rebholz-Schuhmann},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.08131.7},
URN = {urn:nbn:de:0030-drops-15497},
doi = {10.4230/DagSemProc.08131.7},
annote = {Keywords: Text mining, associations, roles, feature engineering, feature extraction}
}
@InProceedings{leser_et_al:DagSemProc.08131.8,
author = {Leser, Ulf and Groth, Philip and Weiss, Bertram and Pohlenz, Hans-Dieter},
title = {{Mining Phenotypes for Protein Function Prediction}},
booktitle = {Ontologies and Text Mining for Life Sciences : Current Status and Future Perspectives},
pages = {1--1},
series = {Dagstuhl Seminar Proceedings (DagSemProc)},
ISSN = {1862-4405},
year = {2008},
volume = {8131},
editor = {Michael Ashburner and Ulf Leser and Dietrich Rebholz-Schuhmann},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.08131.8},
URN = {urn:nbn:de:0030-drops-15133},
doi = {10.4230/DagSemProc.08131.8},
annote = {Keywords: Data mining, funciton prediction, bioinformatics, phenotypes, text mining}
}
@InProceedings{schulz:DagSemProc.08131.9,
author = {Schulz, Stefan},
title = {{Named Entity or Entity Name?}},
booktitle = {Ontologies and Text Mining for Life Sciences : Current Status and Future Perspectives},
pages = {1--1},
series = {Dagstuhl Seminar Proceedings (DagSemProc)},
ISSN = {1862-4405},
year = {2008},
volume = {8131},
editor = {Michael Ashburner and Ulf Leser and Dietrich Rebholz-Schuhmann},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.08131.9},
URN = {urn:nbn:de:0030-drops-15214},
doi = {10.4230/DagSemProc.08131.9},
annote = {Keywords: Ontology, Named Entity Recognition}
}
@InProceedings{washington_et_al:DagSemProc.08131.10,
author = {Washington, N. and Gibson, M. and Mungall, C.J. and Ashburner, Michael and Gkoutos, G. and Westerfield, M. and Haendel, M. and Lewis, S. E.},
title = {{NLP and Phenotypes: using Ontologies to link Human Diseases to Animal Models}},
booktitle = {Ontologies and Text Mining for Life Sciences : Current Status and Future Perspectives},
pages = {1--1},
series = {Dagstuhl Seminar Proceedings (DagSemProc)},
ISSN = {1862-4405},
year = {2008},
volume = {8131},
editor = {Michael Ashburner and Ulf Leser and Dietrich Rebholz-Schuhmann},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.08131.10},
URN = {urn:nbn:de:0030-drops-15143},
doi = {10.4230/DagSemProc.08131.10},
annote = {Keywords: Phenotypes, ontologies, annotation}
}
@InProceedings{buitelaar:DagSemProc.08131.11,
author = {Buitelaar, Paul},
title = {{Ontologies \& Text Mining (for Life Sciences)}},
booktitle = {Ontologies and Text Mining for Life Sciences : Current Status and Future Perspectives},
pages = {1--1},
series = {Dagstuhl Seminar Proceedings (DagSemProc)},
ISSN = {1862-4405},
year = {2008},
volume = {8131},
editor = {Michael Ashburner and Ulf Leser and Dietrich Rebholz-Schuhmann},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.08131.11},
URN = {urn:nbn:de:0030-drops-15095},
doi = {10.4230/DagSemProc.08131.11},
annote = {Keywords: Ontology Search; Ontology Population; Ontology Learning; Lexical Enrichment of Ontologies}
}
@InProceedings{alexopoulou_et_al:DagSemProc.08131.12,
author = {Alexopoulou, Dimitra and W\"{a}chter, Thomas and Pickersgill, Laura and Eyre, Cecilia and Schroeder, Michael},
title = {{Ontology learning with text mining: Two use cases in lipoprotein metabolism and toxicology}},
booktitle = {Ontologies and Text Mining for Life Sciences : Current Status and Future Perspectives},
pages = {1--1},
series = {Dagstuhl Seminar Proceedings (DagSemProc)},
ISSN = {1862-4405},
year = {2008},
volume = {8131},
editor = {Michael Ashburner and Ulf Leser and Dietrich Rebholz-Schuhmann},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.08131.12},
URN = {urn:nbn:de:0030-drops-15063},
doi = {10.4230/DagSemProc.08131.12},
annote = {Keywords: Automatic Term Recognition, Ontology Learning, Lipoprotein Metabolism}
}
@InProceedings{kim:DagSemProc.08131.13,
author = {Kim, Jung-Jae},
title = {{Ontology-based Extraction of Transcription Regulation Events}},
booktitle = {Ontologies and Text Mining for Life Sciences : Current Status and Future Perspectives},
pages = {1--1},
series = {Dagstuhl Seminar Proceedings (DagSemProc)},
ISSN = {1862-4405},
year = {2008},
volume = {8131},
editor = {Michael Ashburner and Ulf Leser and Dietrich Rebholz-Schuhmann},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.08131.13},
URN = {urn:nbn:de:0030-drops-15112},
doi = {10.4230/DagSemProc.08131.13},
annote = {Keywords: Information extraction, ontology, transcription regulation, inference, ontology semantics}
}
@InProceedings{milward:DagSemProc.08131.14,
author = {Milward, David},
title = {{Ontology-Based Interactive Information Extraction}},
booktitle = {Ontologies and Text Mining for Life Sciences : Current Status and Future Perspectives},
pages = {1--1},
series = {Dagstuhl Seminar Proceedings (DagSemProc)},
ISSN = {1862-4405},
year = {2008},
volume = {8131},
editor = {Michael Ashburner and Ulf Leser and Dietrich Rebholz-Schuhmann},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.08131.14},
URN = {urn:nbn:de:0030-drops-15150},
doi = {10.4230/DagSemProc.08131.14},
annote = {Keywords: Information extraction, ontologies, text mining}
}
@InProceedings{hakenberg:DagSemProc.08131.15,
author = {Hakenberg, J\"{o}rg},
title = {{Services for annotation of biomedical text}},
booktitle = {Ontologies and Text Mining for Life Sciences : Current Status and Future Perspectives},
pages = {1--1},
series = {Dagstuhl Seminar Proceedings (DagSemProc)},
ISSN = {1862-4405},
year = {2008},
volume = {8131},
editor = {Michael Ashburner and Ulf Leser and Dietrich Rebholz-Schuhmann},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.08131.15},
URN = {urn:nbn:de:0030-drops-15101},
doi = {10.4230/DagSemProc.08131.15},
annote = {Keywords: BioCreative, NER, EMN, GN, information extraction, web-service, AliBaba}
}
@InProceedings{schuchhardt:DagSemProc.08131.16,
author = {Schuchhardt, Johannes},
title = {{Systems biology approaches for prioritizing therapeutic gene targets}},
booktitle = {Ontologies and Text Mining for Life Sciences : Current Status and Future Perspectives},
pages = {1--1},
series = {Dagstuhl Seminar Proceedings (DagSemProc)},
ISSN = {1862-4405},
year = {2008},
volume = {8131},
editor = {Michael Ashburner and Ulf Leser and Dietrich Rebholz-Schuhmann},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.08131.16},
URN = {urn:nbn:de:0030-drops-15053},
doi = {10.4230/DagSemProc.08131.16},
annote = {Keywords: Rational therapy, predictive modelling, data integration, ontologies, pathway databases}
}
@InProceedings{krauthammer_et_al:DagSemProc.08131.17,
author = {Krauthammer, Michael and Luong, Thaibinh},
title = {{Term Mapping Using Matrix Operations}},
booktitle = {Ontologies and Text Mining for Life Sciences : Current Status and Future Perspectives},
pages = {1--1},
series = {Dagstuhl Seminar Proceedings (DagSemProc)},
ISSN = {1862-4405},
year = {2008},
volume = {8131},
editor = {Michael Ashburner and Ulf Leser and Dietrich Rebholz-Schuhmann},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.08131.17},
URN = {urn:nbn:de:0030-drops-15126},
doi = {10.4230/DagSemProc.08131.17},
annote = {Keywords: Term Identification}
}
@InProceedings{park:DagSemProc.08131.18,
author = {Park, Jong C.},
title = {{Text Mining and Management Tools for Resource Construction and Validation in the Life Sciences}},
booktitle = {Ontologies and Text Mining for Life Sciences : Current Status and Future Perspectives},
pages = {1--1},
series = {Dagstuhl Seminar Proceedings (DagSemProc)},
ISSN = {1862-4405},
year = {2008},
volume = {8131},
editor = {Michael Ashburner and Ulf Leser and Dietrich Rebholz-Schuhmann},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.08131.18},
URN = {urn:nbn:de:0030-drops-15181},
doi = {10.4230/DagSemProc.08131.18},
annote = {Keywords: Text Mining, Resource Construction, Resource Validation, Gene Ontology}
}
@InProceedings{mueller_et_al:DagSemProc.08131.19,
author = {Mueller, Hans-Michael and Rangarajan, Arun and Teal, Tracy K. and van Auken, Kimberly and Chan, Juancarlos and Sternberg, Paul W.},
title = {{Textpresso - an Information Retrieval and Extraction System for Biological Literature}},
booktitle = {Ontologies and Text Mining for Life Sciences : Current Status and Future Perspectives},
pages = {1--1},
series = {Dagstuhl Seminar Proceedings (DagSemProc)},
ISSN = {1862-4405},
year = {2008},
volume = {8131},
editor = {Michael Ashburner and Ulf Leser and Dietrich Rebholz-Schuhmann},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.08131.19},
URN = {urn:nbn:de:0030-drops-15169},
doi = {10.4230/DagSemProc.08131.19},
annote = {Keywords: Information retrieval, literature search engine, information extraction, automated literature curation, semantic search, ontology,}
}
@InProceedings{beisswanger_et_al:DagSemProc.08131.20,
author = {Beisswanger, Elena and Poprat, Michael and Hahn, Udo},
title = {{WordNet-Inspired Terminological Resources for Bio-NLP}},
booktitle = {Ontologies and Text Mining for Life Sciences : Current Status and Future Perspectives},
pages = {1--1},
series = {Dagstuhl Seminar Proceedings (DagSemProc)},
ISSN = {1862-4405},
year = {2008},
volume = {8131},
editor = {Michael Ashburner and Ulf Leser and Dietrich Rebholz-Schuhmann},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops-dev.dagstuhl.de/entities/document/10.4230/DagSemProc.08131.20},
URN = {urn:nbn:de:0030-drops-15073},
doi = {10.4230/DagSemProc.08131.20},
annote = {Keywords: WordNet, Bio-Ontologies}
}
The metadata provided by Dagstuhl Publishing on its webpages, as well as their export formats (such as XML or BibTeX) available at our website, is released under the CC0 1.0 Public Domain Dedication license. That is, you are free to copy, distribute, use, modify, transform, build upon, and produce derived works from our data, even for commercial purposes, all without asking permission. Of course, we are always happy if you provide a link to us as the source of the data.
Read the full CC0 1.0 legal code for the exact terms that apply: https://creativecommons.org/publicdomain/zero/1.0/legalcode
Feedback for Dagstuhl Publishing