@Proceedings{pisanti_et_al:LIPIcs.CPM.2019,
title = {{LIPIcs, Volume 128, CPM'19, Complete Volume}},
booktitle = {30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-103-0},
ISSN = {1868-8969},
year = {2019},
volume = {128},
editor = {Pisanti, Nadia and P. Pissis, Solon},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2019},
URN = {urn:nbn:de:0030-drops-105577},
doi = {10.4230/LIPIcs.CPM.2019},
annote = {Keywords: Mathematics of computing, Discrete mathematics, Applied computing, Computational biology, Information theory, Information systems}
}
@InProceedings{pisanti_et_al:LIPIcs.CPM.2019.0,
author = {Pisanti, Nadia and P. Pissis, Solon},
title = {{Front Matter, Table of Contents, Preface, Conference Organization}},
booktitle = {30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)},
pages = {0:i--0:xviii},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-103-0},
ISSN = {1868-8969},
year = {2019},
volume = {128},
editor = {Pisanti, Nadia and P. Pissis, Solon},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2019.0},
URN = {urn:nbn:de:0030-drops-104719},
doi = {10.4230/LIPIcs.CPM.2019.0},
annote = {Keywords: Front Matter, Table of Contents, Preface, Conference Organization}
}
@InProceedings{gawrychowski:LIPIcs.CPM.2019.1,
author = {Gawrychowski, Pawe{\l}},
title = {{How to Exploit Periodicity}},
booktitle = {30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)},
pages = {1:1--1:1},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-103-0},
ISSN = {1868-8969},
year = {2019},
volume = {128},
editor = {Pisanti, Nadia and P. Pissis, Solon},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2019.1},
URN = {urn:nbn:de:0030-drops-104727},
doi = {10.4230/LIPIcs.CPM.2019.1},
annote = {Keywords: periodicity, pattern matching, Hamming distance}
}
@InProceedings{dolce_et_al:LIPIcs.CPM.2019.2,
author = {Dolce, Francesco and Restivo, Antonio and Reutenauer, Christophe},
title = {{Some Variations on Lyndon Words}},
booktitle = {30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)},
pages = {2:1--2:14},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-103-0},
ISSN = {1868-8969},
year = {2019},
volume = {128},
editor = {Pisanti, Nadia and P. Pissis, Solon},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2019.2},
URN = {urn:nbn:de:0030-drops-104732},
doi = {10.4230/LIPIcs.CPM.2019.2},
annote = {Keywords: Lyndon words, Infinite words, Left Lyndon trees, Left Cartesian trees}
}
@InProceedings{zivukelson:LIPIcs.CPM.2019.3,
author = {Ziv-Ukelson, Michal},
title = {{Stringology Combats Microbiological Threats}},
booktitle = {30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)},
pages = {3:1--3:1},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-103-0},
ISSN = {1868-8969},
year = {2019},
volume = {128},
editor = {Pisanti, Nadia and P. Pissis, Solon},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2019.3},
URN = {urn:nbn:de:0030-drops-104748},
doi = {10.4230/LIPIcs.CPM.2019.3},
annote = {Keywords: comparative genomics, syntenic blocks, gene clusters, reconciliation of gene and species trees}
}
@InProceedings{prezza:LIPIcs.CPM.2019.4,
author = {Prezza, Nicola},
title = {{Optimal Rank and Select Queries on Dictionary-Compressed Text}},
booktitle = {30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)},
pages = {4:1--4:12},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-103-0},
ISSN = {1868-8969},
year = {2019},
volume = {128},
editor = {Pisanti, Nadia and P. Pissis, Solon},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2019.4},
URN = {urn:nbn:de:0030-drops-104756},
doi = {10.4230/LIPIcs.CPM.2019.4},
annote = {Keywords: Rank, Select, Dictionary compression, String Attractors}
}
@InProceedings{jiang_et_al:LIPIcs.CPM.2019.5,
author = {Jiang, Haitao and Guo, Jiong and Zhu, Daming and Zhu, Binhai},
title = {{A 2-Approximation Algorithm for the Complementary Maximal Strip Recovery Problem}},
booktitle = {30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)},
pages = {5:1--5:13},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-103-0},
ISSN = {1868-8969},
year = {2019},
volume = {128},
editor = {Pisanti, Nadia and P. Pissis, Solon},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2019.5},
URN = {urn:nbn:de:0030-drops-104769},
doi = {10.4230/LIPIcs.CPM.2019.5},
annote = {Keywords: Maximal strip recovery, complementary maximal strip recovery, computational genomics, approximation algorithm, local search}
}
@InProceedings{amir_et_al:LIPIcs.CPM.2019.6,
author = {Amir, Amihood and Kondratovsky, Eitan},
title = {{Sufficient Conditions for Efficient Indexing Under Different Matchings}},
booktitle = {30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)},
pages = {6:1--6:12},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-103-0},
ISSN = {1868-8969},
year = {2019},
volume = {128},
editor = {Pisanti, Nadia and P. Pissis, Solon},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2019.6},
URN = {urn:nbn:de:0030-drops-104773},
doi = {10.4230/LIPIcs.CPM.2019.6},
annote = {Keywords: off-the-shelf indexing algorithms, general matching relations, weaker sufficient conditions for indexing}
}
@InProceedings{prezza_et_al:LIPIcs.CPM.2019.7,
author = {Prezza, Nicola and Rosone, Giovanna},
title = {{Space-Efficient Computation of the LCP Array from the Burrows-Wheeler Transform}},
booktitle = {30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)},
pages = {7:1--7:18},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-103-0},
ISSN = {1868-8969},
year = {2019},
volume = {128},
editor = {Pisanti, Nadia and P. Pissis, Solon},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2019.7},
URN = {urn:nbn:de:0030-drops-104782},
doi = {10.4230/LIPIcs.CPM.2019.7},
annote = {Keywords: Burrows-Wheeler Transform, LCP array, DNA reads}
}
@InProceedings{kiirala_et_al:LIPIcs.CPM.2019.8,
author = {Kiirala, Niko and Salmela, Leena and Tomescu, Alexandru I.},
title = {{Safe and Complete Algorithms for Dynamic Programming Problems, with an Application to RNA Folding}},
booktitle = {30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)},
pages = {8:1--8:16},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-103-0},
ISSN = {1868-8969},
year = {2019},
volume = {128},
editor = {Pisanti, Nadia and P. Pissis, Solon},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2019.8},
URN = {urn:nbn:de:0030-drops-104794},
doi = {10.4230/LIPIcs.CPM.2019.8},
annote = {Keywords: RNA secondary structure, RNA folding, Safe solution, Safe and complete algorithm, Counting problem}
}
@InProceedings{nishimoto_et_al:LIPIcs.CPM.2019.9,
author = {Nishimoto, Takaaki and Tabei, Yasuo},
title = {{Conversion from RLBWT to LZ77}},
booktitle = {30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)},
pages = {9:1--9:12},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-103-0},
ISSN = {1868-8969},
year = {2019},
volume = {128},
editor = {Pisanti, Nadia and P. Pissis, Solon},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2019.9},
URN = {urn:nbn:de:0030-drops-104807},
doi = {10.4230/LIPIcs.CPM.2019.9},
annote = {Keywords: Burrows-Wheeler Transform, Lempel-Ziv Parsing, Lossless Data Compression}
}
@InProceedings{belazzougui_et_al:LIPIcs.CPM.2019.10,
author = {Belazzougui, Djamal and Cunial, Fabio},
title = {{Fully-Functional Bidirectional Burrows-Wheeler Indexes and Infinite-Order De Bruijn Graphs}},
booktitle = {30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)},
pages = {10:1--10:15},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-103-0},
ISSN = {1868-8969},
year = {2019},
volume = {128},
editor = {Pisanti, Nadia and P. Pissis, Solon},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2019.10},
URN = {urn:nbn:de:0030-drops-104811},
doi = {10.4230/LIPIcs.CPM.2019.10},
annote = {Keywords: BWT, suffix tree, CDAWG, de Bruijn graph, maximal repeat, string depth, contraction, bidirectional index}
}
@InProceedings{ganczorz:LIPIcs.CPM.2019.11,
author = {Ga\'{n}czorz, Micha{\l}},
title = {{Entropy Lower Bounds for Dictionary Compression}},
booktitle = {30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)},
pages = {11:1--11:18},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-103-0},
ISSN = {1868-8969},
year = {2019},
volume = {128},
editor = {Pisanti, Nadia and P. Pissis, Solon},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2019.11},
URN = {urn:nbn:de:0030-drops-104822},
doi = {10.4230/LIPIcs.CPM.2019.11},
annote = {Keywords: compression, empirical entropy, parsing, lower bounds}
}
@InProceedings{giancarlo_et_al:LIPIcs.CPM.2019.12,
author = {Giancarlo, Raffaele and Manzini, Giovanni and Rosone, Giovanna and Sciortino, Marinella},
title = {{A New Class of Searchable and Provably Highly Compressible String Transformations}},
booktitle = {30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)},
pages = {12:1--12:12},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-103-0},
ISSN = {1868-8969},
year = {2019},
volume = {128},
editor = {Pisanti, Nadia and P. Pissis, Solon},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2019.12},
URN = {urn:nbn:de:0030-drops-104833},
doi = {10.4230/LIPIcs.CPM.2019.12},
annote = {Keywords: Data Indexing and Compression, Burrows-Wheeler Transformation, Combinatorics on Words}
}
@InProceedings{kosolobov_et_al:LIPIcs.CPM.2019.13,
author = {Kosolobov, Dmitry and Sivukhin, Nikita},
title = {{Compressed Multiple Pattern Matching}},
booktitle = {30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)},
pages = {13:1--13:14},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-103-0},
ISSN = {1868-8969},
year = {2019},
volume = {128},
editor = {Pisanti, Nadia and P. Pissis, Solon},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2019.13},
URN = {urn:nbn:de:0030-drops-104847},
doi = {10.4230/LIPIcs.CPM.2019.13},
annote = {Keywords: multiple pattern matching, compressed space, Aho--Corasick automaton}
}
@InProceedings{labib_et_al:LIPIcs.CPM.2019.14,
author = {Labib, Karim and Uzna\'{n}ski, Przemys{\l}aw and Wolleb-Graf, Daniel},
title = {{Hamming Distance Completeness}},
booktitle = {30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)},
pages = {14:1--14:17},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-103-0},
ISSN = {1868-8969},
year = {2019},
volume = {128},
editor = {Pisanti, Nadia and P. Pissis, Solon},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2019.14},
URN = {urn:nbn:de:0030-drops-104853},
doi = {10.4230/LIPIcs.CPM.2019.14},
annote = {Keywords: fine grained complexity, approximate pattern matching, matrix products}
}
@InProceedings{studeny_et_al:LIPIcs.CPM.2019.15,
author = {Studen\'{y}, Jan and Uzna\'{n}ski, Przemys{\l}aw},
title = {{Approximating Approximate Pattern Matching}},
booktitle = {30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)},
pages = {15:1--15:13},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-103-0},
ISSN = {1868-8969},
year = {2019},
volume = {128},
editor = {Pisanti, Nadia and P. Pissis, Solon},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2019.15},
URN = {urn:nbn:de:0030-drops-104865},
doi = {10.4230/LIPIcs.CPM.2019.15},
annote = {Keywords: Approximate Pattern Matching, l\underlinep Distance, l\underline1 Distance, Hamming Distance, Approximation Algorithms}
}
@InProceedings{park_et_al:LIPIcs.CPM.2019.16,
author = {Park, Sung Gwan and Amir, Amihood and Landau, Gad M. and Park, Kunsoo},
title = {{Cartesian Tree Matching and Indexing}},
booktitle = {30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)},
pages = {16:1--16:14},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-103-0},
ISSN = {1868-8969},
year = {2019},
volume = {128},
editor = {Pisanti, Nadia and P. Pissis, Solon},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2019.16},
URN = {urn:nbn:de:0030-drops-104879},
doi = {10.4230/LIPIcs.CPM.2019.16},
annote = {Keywords: Cartesian tree matching, Pattern matching, Indexing, Parent-distance representation}
}
@InProceedings{bannai_et_al:LIPIcs.CPM.2019.17,
author = {Bannai, Hideo and K\"{a}rkk\"{a}inen, Juha and K\"{o}ppl, Dominik and Pia̧tkowski, Marcin},
title = {{Indexing the Bijective BWT}},
booktitle = {30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)},
pages = {17:1--17:14},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-103-0},
ISSN = {1868-8969},
year = {2019},
volume = {128},
editor = {Pisanti, Nadia and P. Pissis, Solon},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2019.17},
URN = {urn:nbn:de:0030-drops-104887},
doi = {10.4230/LIPIcs.CPM.2019.17},
annote = {Keywords: Burrows-Wheeler Transform, Lyndon words, Text Indexing}
}
@InProceedings{papelange:LIPIcs.CPM.2019.18,
author = {Pape-Lange, Julian},
title = {{On Maximal Repeats in Compressed Strings}},
booktitle = {30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)},
pages = {18:1--18:13},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-103-0},
ISSN = {1868-8969},
year = {2019},
volume = {128},
editor = {Pisanti, Nadia and P. Pissis, Solon},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2019.18},
URN = {urn:nbn:de:0030-drops-104898},
doi = {10.4230/LIPIcs.CPM.2019.18},
annote = {Keywords: Maximal repeats, Combinatorics on compressed strings, LZ77, Compact suffix automata, CDAWGs}
}
@InProceedings{akhavi_et_al:LIPIcs.CPM.2019.19,
author = {Akhavi, Ali and Cl\'{e}ment, Julien and Darthenay, Dimitri and Lhote, Lo\"{i}ck and Vall\'{e}e, Brigitte},
title = {{Dichotomic Selection on Words: A Probabilistic Analysis}},
booktitle = {30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)},
pages = {19:1--19:19},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-103-0},
ISSN = {1868-8969},
year = {2019},
volume = {128},
editor = {Pisanti, Nadia and P. Pissis, Solon},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2019.19},
URN = {urn:nbn:de:0030-drops-104903},
doi = {10.4230/LIPIcs.CPM.2019.19},
annote = {Keywords: dichotomic selection, text algorithms, analysis of algorithms, average case analysis of algorithms, trie, suffix array, lcp-array, information theory, numeration process, sources, entropy, coincidence, analytic combinatorics, depoissonization techniques}
}
@InProceedings{bulteau_et_al:LIPIcs.CPM.2019.20,
author = {Bulteau, Laurent and Dabrowski, Konrad K. and Fertin, Guillaume and Johnson, Matthew and Paulusma, Dani\"{e}l and Vialette, St\'{e}phane},
title = {{Finding a Small Number of Colourful Components}},
booktitle = {30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)},
pages = {20:1--20:14},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-103-0},
ISSN = {1868-8969},
year = {2019},
volume = {128},
editor = {Pisanti, Nadia and P. Pissis, Solon},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2019.20},
URN = {urn:nbn:de:0030-drops-104914},
doi = {10.4230/LIPIcs.CPM.2019.20},
annote = {Keywords: Colourful component, colourful partition, tree, treewidth, vertex cover}
}
@InProceedings{gawrychowski_et_al:LIPIcs.CPM.2019.21,
author = {Gawrychowski, Pawe{\l} and Starikovskaya, Tatiana},
title = {{Streaming Dictionary Matching with Mismatches}},
booktitle = {30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)},
pages = {21:1--21:15},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-103-0},
ISSN = {1868-8969},
year = {2019},
volume = {128},
editor = {Pisanti, Nadia and P. Pissis, Solon},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2019.21},
URN = {urn:nbn:de:0030-drops-104925},
doi = {10.4230/LIPIcs.CPM.2019.21},
annote = {Keywords: Streaming, multiple pattern matching, Hamming distance}
}
@InProceedings{gawrychowski_et_al:LIPIcs.CPM.2019.22,
author = {Gawrychowski, Pawe{\l} and Radoszewski, Jakub and Starikovskaya, Tatiana},
title = {{Quasi-Periodicity in Streams}},
booktitle = {30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)},
pages = {22:1--22:14},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-103-0},
ISSN = {1868-8969},
year = {2019},
volume = {128},
editor = {Pisanti, Nadia and P. Pissis, Solon},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2019.22},
URN = {urn:nbn:de:0030-drops-104930},
doi = {10.4230/LIPIcs.CPM.2019.22},
annote = {Keywords: Streaming algorithms, quasi-periodicity, covers, seeds}
}
@InProceedings{sugahara_et_al:LIPIcs.CPM.2019.23,
author = {Sugahara, Ryo and Nakashima, Yuto and Inenaga, Shunsuke and Bannai, Hideo and Takeda, Masayuki},
title = {{Computing Runs on a Trie}},
booktitle = {30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)},
pages = {23:1--23:11},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-103-0},
ISSN = {1868-8969},
year = {2019},
volume = {128},
editor = {Pisanti, Nadia and P. Pissis, Solon},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2019.23},
URN = {urn:nbn:de:0030-drops-104943},
doi = {10.4230/LIPIcs.CPM.2019.23},
annote = {Keywords: runs, Lyndon words}
}
@InProceedings{cazaux_et_al:LIPIcs.CPM.2019.24,
author = {Cazaux, Bastien and Rivals, Eric},
title = {{Linking BWT and XBW via Aho-Corasick Automaton: Applications to Run-Length Encoding}},
booktitle = {30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)},
pages = {24:1--24:20},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-103-0},
ISSN = {1868-8969},
year = {2019},
volume = {128},
editor = {Pisanti, Nadia and P. Pissis, Solon},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2019.24},
URN = {urn:nbn:de:0030-drops-104955},
doi = {10.4230/LIPIcs.CPM.2019.24},
annote = {Keywords: Data Structure, Algorithm, Aho-Corasick Tree, compression, RLE}
}
@InProceedings{alzamel_et_al:LIPIcs.CPM.2019.25,
author = {Alzamel, Mai and Crochemore, Maxime and Iliopoulos, Costas S. and Kociumaka, Tomasz and Radoszewski, Jakub and Rytter, Wojciech and Straszy\'{n}ski, Juliusz and Wale\'{n}, Tomasz and Zuba, Wiktor},
title = {{Quasi-Linear-Time Algorithm for Longest Common Circular Factor}},
booktitle = {30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)},
pages = {25:1--25:14},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-103-0},
ISSN = {1868-8969},
year = {2019},
volume = {128},
editor = {Pisanti, Nadia and P. Pissis, Solon},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2019.25},
URN = {urn:nbn:de:0030-drops-104961},
doi = {10.4230/LIPIcs.CPM.2019.25},
annote = {Keywords: longest common factor, circular pattern matching, internal pattern matching, intersection of hyperrectangles}
}
@InProceedings{diazdominguez_et_al:LIPIcs.CPM.2019.26,
author = {D{\'\i}az-Dom{\'\i}nguez, Diego and Gagie, Travis and Navarro, Gonzalo},
title = {{Simulating the DNA Overlap Graph in Succinct Space}},
booktitle = {30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)},
pages = {26:1--26:20},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-103-0},
ISSN = {1868-8969},
year = {2019},
volume = {128},
editor = {Pisanti, Nadia and P. Pissis, Solon},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2019.26},
URN = {urn:nbn:de:0030-drops-104978},
doi = {10.4230/LIPIcs.CPM.2019.26},
annote = {Keywords: Overlap graph, de Bruijn graph, DNA sequencing, Succinct ordinal trees}
}
@InProceedings{funakoshi_et_al:LIPIcs.CPM.2019.27,
author = {Funakoshi, Mitsuru and Nakashima, Yuto and Inenaga, Shunsuke and Bannai, Hideo and Takeda, Masayuki},
title = {{Faster Queries for Longest Substring Palindrome After Block Edit}},
booktitle = {30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)},
pages = {27:1--27:13},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-103-0},
ISSN = {1868-8969},
year = {2019},
volume = {128},
editor = {Pisanti, Nadia and P. Pissis, Solon},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2019.27},
URN = {urn:nbn:de:0030-drops-104989},
doi = {10.4230/LIPIcs.CPM.2019.27},
annote = {Keywords: palindromes, string algorithm, periodicity}
}
@InProceedings{bernardini_et_al:LIPIcs.CPM.2019.28,
author = {Bernardini, Giulia and Bonizzoni, Paola and Della Vedova, Gianluca and Patterson, Murray},
title = {{A Rearrangement Distance for Fully-Labelled Trees}},
booktitle = {30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)},
pages = {28:1--28:15},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-103-0},
ISSN = {1868-8969},
year = {2019},
volume = {128},
editor = {Pisanti, Nadia and P. Pissis, Solon},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2019.28},
URN = {urn:nbn:de:0030-drops-104998},
doi = {10.4230/LIPIcs.CPM.2019.28},
annote = {Keywords: Tree rearrangement distance, Cancer progression, Approximation algorithms, Computational complexity}
}
@InProceedings{urabe_et_al:LIPIcs.CPM.2019.29,
author = {Urabe, Yuki and Nakashima, Yuto and Inenaga, Shunsuke and Bannai, Hideo and Takeda, Masayuki},
title = {{On the Size of Overlapping Lempel-Ziv and Lyndon Factorizations}},
booktitle = {30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)},
pages = {29:1--29:11},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-103-0},
ISSN = {1868-8969},
year = {2019},
volume = {128},
editor = {Pisanti, Nadia and P. Pissis, Solon},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2019.29},
URN = {urn:nbn:de:0030-drops-105008},
doi = {10.4230/LIPIcs.CPM.2019.29},
annote = {Keywords: Lyndon factorization, Lyndon words, Lempel-Ziv factorization}
}
@InProceedings{hendrian_et_al:LIPIcs.CPM.2019.30,
author = {Hendrian, Diptarama and Takagi, Takuya and Inenaga, Shunsuke},
title = {{Online Algorithms for Constructing Linear-Size Suffix Trie}},
booktitle = {30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)},
pages = {30:1--30:19},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-103-0},
ISSN = {1868-8969},
year = {2019},
volume = {128},
editor = {Pisanti, Nadia and P. Pissis, Solon},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2019.30},
URN = {urn:nbn:de:0030-drops-105016},
doi = {10.4230/LIPIcs.CPM.2019.30},
annote = {Keywords: Indexing structure, Linear-size suffix trie, Online algorithm, Pattern Matching}
}
@InProceedings{merkurev_et_al:LIPIcs.CPM.2019.31,
author = {Merkurev, Oleg and Shur, Arseny M.},
title = {{Searching Long Repeats in Streams}},
booktitle = {30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)},
pages = {31:1--31:14},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-103-0},
ISSN = {1868-8969},
year = {2019},
volume = {128},
editor = {Pisanti, Nadia and P. Pissis, Solon},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2019.31},
URN = {urn:nbn:de:0030-drops-105029},
doi = {10.4230/LIPIcs.CPM.2019.31},
annote = {Keywords: Longest repeated substring, longest repeated reversed substring, streaming algorithm, Karp, Rabin fingerprint, suffix tree}
}
@InProceedings{alamro_et_al:LIPIcs.CPM.2019.32,
author = {Alamro, Hayam and Badkobeh, Golnaz and Belazzougui, Djamal and Iliopoulos, Costas S. and Puglisi, Simon J.},
title = {{Computing the Antiperiod(s) of a String}},
booktitle = {30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)},
pages = {32:1--32:11},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-103-0},
ISSN = {1868-8969},
year = {2019},
volume = {128},
editor = {Pisanti, Nadia and P. Pissis, Solon},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2019.32},
URN = {urn:nbn:de:0030-drops-105035},
doi = {10.4230/LIPIcs.CPM.2019.32},
annote = {Keywords: antiperiod, antipower, power, period, repetition, run, string}
}
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