@Proceedings{lakin_et_al:LIPIcs.DNA.27,
title = {{LIPIcs, Volume 205, DNA 27, Complete Volume}},
booktitle = {27th International Conference on DNA Computing and Molecular Programming (DNA 27)},
pages = {1--240},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-205-1},
ISSN = {1868-8969},
year = {2021},
volume = {205},
editor = {Lakin, Matthew R. and \v{S}ulc, Petr},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.27},
URN = {urn:nbn:de:0030-drops-146669},
doi = {10.4230/LIPIcs.DNA.27},
annote = {Keywords: LIPIcs, Volume 205, DNA 27, Complete Volume}
}
@InProceedings{lakin_et_al:LIPIcs.DNA.27.0,
author = {Lakin, Matthew R. and \v{S}ulc, Petr},
title = {{Front Matter, Table of Contents, Preface, Conference Organization}},
booktitle = {27th International Conference on DNA Computing and Molecular Programming (DNA 27)},
pages = {0:i--0:xiv},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-205-1},
ISSN = {1868-8969},
year = {2021},
volume = {205},
editor = {Lakin, Matthew R. and \v{S}ulc, Petr},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.27.0},
URN = {urn:nbn:de:0030-drops-146679},
doi = {10.4230/LIPIcs.DNA.27.0},
annote = {Keywords: Front Matter, Table of Contents, Preface, Conference Organization}
}
@InProceedings{linder_et_al:LIPIcs.DNA.27.1,
author = {Linder, Johannes and Chen, Yuan-Jyue and Wong, David and Seelig, Georg and Ceze, Luis and Strauss, Karin},
title = {{Robust Digital Molecular Design of Binarized Neural Networks}},
booktitle = {27th International Conference on DNA Computing and Molecular Programming (DNA 27)},
pages = {1:1--1:20},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-205-1},
ISSN = {1868-8969},
year = {2021},
volume = {205},
editor = {Lakin, Matthew R. and \v{S}ulc, Petr},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.27.1},
URN = {urn:nbn:de:0030-drops-146685},
doi = {10.4230/LIPIcs.DNA.27.1},
annote = {Keywords: Molecular Computing, Neural Network, Binarized Neural Network, Digital Logic, DNA, Strand Displacement}
}
@InProceedings{haley_et_al:LIPIcs.DNA.27.2,
author = {Haley, David and Doty, David},
title = {{Computing Properties of Thermodynamic Binding Networks: An Integer Programming Approach}},
booktitle = {27th International Conference on DNA Computing and Molecular Programming (DNA 27)},
pages = {2:1--2:16},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-205-1},
ISSN = {1868-8969},
year = {2021},
volume = {205},
editor = {Lakin, Matthew R. and \v{S}ulc, Petr},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.27.2},
URN = {urn:nbn:de:0030-drops-146694},
doi = {10.4230/LIPIcs.DNA.27.2},
annote = {Keywords: thermodynamic binding networks, integer programming, constraint programming}
}
@InProceedings{alseth_et_al:LIPIcs.DNA.27.3,
author = {Alseth, Andrew and Hader, Daniel and Patitz, Matthew J.},
title = {{Self-Replication via Tile Self-Assembly (Extended Abstract)}},
booktitle = {27th International Conference on DNA Computing and Molecular Programming (DNA 27)},
pages = {3:1--3:22},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-205-1},
ISSN = {1868-8969},
year = {2021},
volume = {205},
editor = {Lakin, Matthew R. and \v{S}ulc, Petr},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.27.3},
URN = {urn:nbn:de:0030-drops-146707},
doi = {10.4230/LIPIcs.DNA.27.3},
annote = {Keywords: Algorithmic self-assembly, tile assembly model, self-replication}
}
@InProceedings{furcy_et_al:LIPIcs.DNA.27.4,
author = {Furcy, David and Summers, Scott M. and Withers, Logan},
title = {{Improved Lower and Upper Bounds on the Tile Complexity of Uniquely Self-Assembling a Thin Rectangle Non-Cooperatively in 3D}},
booktitle = {27th International Conference on DNA Computing and Molecular Programming (DNA 27)},
pages = {4:1--4:18},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-205-1},
ISSN = {1868-8969},
year = {2021},
volume = {205},
editor = {Lakin, Matthew R. and \v{S}ulc, Petr},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.27.4},
URN = {urn:nbn:de:0030-drops-146716},
doi = {10.4230/LIPIcs.DNA.27.4},
annote = {Keywords: Self-assembly, algorithmic self-assembly, tile self-assembly}
}
@InProceedings{levy_et_al:LIPIcs.DNA.27.5,
author = {Levy, Nicolas and Schabanel, Nicolas},
title = {{ENSnano: A 3D Modeling Software for DNA Nanostructures}},
booktitle = {27th International Conference on DNA Computing and Molecular Programming (DNA 27)},
pages = {5:1--5:23},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-205-1},
ISSN = {1868-8969},
year = {2021},
volume = {205},
editor = {Lakin, Matthew R. and \v{S}ulc, Petr},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.27.5},
URN = {urn:nbn:de:0030-drops-146722},
doi = {10.4230/LIPIcs.DNA.27.5},
annote = {Keywords: Software, DNA nanostructure, Molecular design, molecular self-assembly}
}
@InProceedings{meunier_et_al:LIPIcs.DNA.27.6,
author = {Meunier, Pierre-\'{E}tienne and Regnault, Damien},
title = {{Directed Non-Cooperative Tile Assembly Is Decidable}},
booktitle = {27th International Conference on DNA Computing and Molecular Programming (DNA 27)},
pages = {6:1--6:21},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-205-1},
ISSN = {1868-8969},
year = {2021},
volume = {205},
editor = {Lakin, Matthew R. and \v{S}ulc, Petr},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.27.6},
URN = {urn:nbn:de:0030-drops-146735},
doi = {10.4230/LIPIcs.DNA.27.6},
annote = {Keywords: Self-assembly, Molecular Computing, Models of Computation, Computational Geometry}
}
@InProceedings{breik_et_al:LIPIcs.DNA.27.7,
author = {Breik, Keenan and Luchsinger, Austin and Soloveichik, David},
title = {{Molecular Machines from Topological Linkages}},
booktitle = {27th International Conference on DNA Computing and Molecular Programming (DNA 27)},
pages = {7:1--7:20},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-205-1},
ISSN = {1868-8969},
year = {2021},
volume = {205},
editor = {Lakin, Matthew R. and \v{S}ulc, Petr},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.27.7},
URN = {urn:nbn:de:0030-drops-146749},
doi = {10.4230/LIPIcs.DNA.27.7},
annote = {Keywords: chemical computation, mechanical computation, bioengineering, models of biochemistry, molecular machines, mechanical linkages, generic rigidity}
}
@InProceedings{cook_et_al:LIPIcs.DNA.27.8,
author = {Cook, Matthew and St\'{e}rin, Tristan and Woods, Damien},
title = {{Small Tile Sets That Compute While Solving Mazes}},
booktitle = {27th International Conference on DNA Computing and Molecular Programming (DNA 27)},
pages = {8:1--8:20},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-205-1},
ISSN = {1868-8969},
year = {2021},
volume = {205},
editor = {Lakin, Matthew R. and \v{S}ulc, Petr},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.27.8},
URN = {urn:nbn:de:0030-drops-146758},
doi = {10.4230/LIPIcs.DNA.27.8},
annote = {Keywords: model of computation, self-assembly, small universal tile set, Boolean circuits, maze-solving}
}
@InProceedings{condon_et_al:LIPIcs.DNA.27.9,
author = {Condon, Anne and Hajiaghayi, Monir and Thachuk, Chris},
title = {{Predicting Minimum Free Energy Structures of Multi-Stranded Nucleic Acid Complexes Is APX-Hard}},
booktitle = {27th International Conference on DNA Computing and Molecular Programming (DNA 27)},
pages = {9:1--9:21},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-205-1},
ISSN = {1868-8969},
year = {2021},
volume = {205},
editor = {Lakin, Matthew R. and \v{S}ulc, Petr},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.27.9},
URN = {urn:nbn:de:0030-drops-146765},
doi = {10.4230/LIPIcs.DNA.27.9},
annote = {Keywords: Nucleic Acid Secondary Structure Prediction, APX-Hardness, NP-Hardness}
}
@InProceedings{klinge_et_al:LIPIcs.DNA.27.10,
author = {Klinge, Titus H. and Lathrop, James I. and Osera, Peter-Michael and Rogers, Allison},
title = {{Reactamole: Functional Reactive Molecular Programming}},
booktitle = {27th International Conference on DNA Computing and Molecular Programming (DNA 27)},
pages = {10:1--10:20},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-205-1},
ISSN = {1868-8969},
year = {2021},
volume = {205},
editor = {Lakin, Matthew R. and \v{S}ulc, Petr},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.27.10},
URN = {urn:nbn:de:0030-drops-146775},
doi = {10.4230/LIPIcs.DNA.27.10},
annote = {Keywords: Chemical Reaction Network, Functional Reactive Programming, Domain Specific Language}
}
@InProceedings{chen_et_al:LIPIcs.DNA.27.11,
author = {Chen, Tonglin and Solanki, Arnav and Riedel, Marc},
title = {{Parallel Pairwise Operations on Data Stored in DNA: Sorting, Shifting, and Searching}},
booktitle = {27th International Conference on DNA Computing and Molecular Programming (DNA 27)},
pages = {11:1--11:21},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-205-1},
ISSN = {1868-8969},
year = {2021},
volume = {205},
editor = {Lakin, Matthew R. and \v{S}ulc, Petr},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.27.11},
URN = {urn:nbn:de:0030-drops-146780},
doi = {10.4230/LIPIcs.DNA.27.11},
annote = {Keywords: Molecular Computing, DNA Computing, DNA Storage, Parallel Computing, Strand Displacement}
}
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