@Proceedings{chen_et_al:LIPIcs.DNA.29,
title = {{LIPIcs, Volume 276, DNA 29, Complete Volume}},
booktitle = {29th International Conference on DNA Computing and Molecular Programming (DNA 29)},
pages = {1--230},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-297-6},
ISSN = {1868-8969},
year = {2023},
volume = {276},
editor = {Chen, Ho-Lin and Evans, Constantine G.},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.29},
URN = {urn:nbn:de:0030-drops-187827},
doi = {10.4230/LIPIcs.DNA.29},
annote = {Keywords: LIPIcs, Volume 276, DNA 29, Complete Volume}
}
@InProceedings{chen_et_al:LIPIcs.DNA.29.0,
author = {Chen, Ho-Lin and Evans, Constantine G.},
title = {{Front Matter, Table of Contents, Preface, Conference Organization}},
booktitle = {29th International Conference on DNA Computing and Molecular Programming (DNA 29)},
pages = {0:i--0:xiv},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-297-6},
ISSN = {1868-8969},
year = {2023},
volume = {276},
editor = {Chen, Ho-Lin and Evans, Constantine G.},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.29.0},
URN = {urn:nbn:de:0030-drops-187839},
doi = {10.4230/LIPIcs.DNA.29.0},
annote = {Keywords: Front Matter, Table of Contents, Preface, Conference Organization}
}
@InProceedings{shalaby_et_al:LIPIcs.DNA.29.1,
author = {Shalaby, Ahmed and Thachuk, Chris and Woods, Damien},
title = {{Minimum Free Energy, Partition Function and Kinetics Simulation Algorithms for a Multistranded Scaffolded DNA Computer}},
booktitle = {29th International Conference on DNA Computing and Molecular Programming (DNA 29)},
pages = {1:1--1:22},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-297-6},
ISSN = {1868-8969},
year = {2023},
volume = {276},
editor = {Chen, Ho-Lin and Evans, Constantine G.},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.29.1},
URN = {urn:nbn:de:0030-drops-187840},
doi = {10.4230/LIPIcs.DNA.29.1},
annote = {Keywords: thermodynamic computation, model of computation, molecular computing, minimum free energy, partition function, DNA computing, DNA self-assembly, DNA strand displacement, kinetics simulation}
}
@InProceedings{becker_et_al:LIPIcs.DNA.29.2,
author = {Becker, Florent and Heydarshahi, Shahrzad},
title = {{DNA Tile Self-Assembly for 3D-Surfaces: Towards Genus Identification}},
booktitle = {29th International Conference on DNA Computing and Molecular Programming (DNA 29)},
pages = {2:1--2:21},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-297-6},
ISSN = {1868-8969},
year = {2023},
volume = {276},
editor = {Chen, Ho-Lin and Evans, Constantine G.},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.29.2},
URN = {urn:nbn:de:0030-drops-187851},
doi = {10.4230/LIPIcs.DNA.29.2},
annote = {Keywords: Tile self-assembly, DNA computing, Geometric surfaces}
}
@InProceedings{condon_et_al:LIPIcs.DNA.29.3,
author = {Condon, Anne and Emek, Yuval and Harlev, Noga},
title = {{On the Runtime of Chemical Reaction Networks Beyond Idealized Conditions}},
booktitle = {29th International Conference on DNA Computing and Molecular Programming (DNA 29)},
pages = {3:1--3:22},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-297-6},
ISSN = {1868-8969},
year = {2023},
volume = {276},
editor = {Chen, Ho-Lin and Evans, Constantine G.},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.29.3},
URN = {urn:nbn:de:0030-drops-187861},
doi = {10.4230/LIPIcs.DNA.29.3},
annote = {Keywords: chemical reaction networks, adversarial runtime, weak fairness, predicate decidability}
}
@InProceedings{berleant:LIPIcs.DNA.29.4,
author = {Berleant, Joseph Don},
title = {{Rational Design of DNA Sequences with Non-Orthogonal Binding Interactions}},
booktitle = {29th International Conference on DNA Computing and Molecular Programming (DNA 29)},
pages = {4:1--4:22},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-297-6},
ISSN = {1868-8969},
year = {2023},
volume = {276},
editor = {Chen, Ho-Lin and Evans, Constantine G.},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.29.4},
URN = {urn:nbn:de:0030-drops-187877},
doi = {10.4230/LIPIcs.DNA.29.4},
annote = {Keywords: DNA sequence design, binding networks, promiscuous binding, non-orthogonal binding, isometric graph embeddings}
}
@InProceedings{lovrod_et_al:LIPIcs.DNA.29.5,
author = {Lovrod, Jordan and Beronov, Boyan and Zhang, Chenwei and Winfree, Erik and Condon, Anne},
title = {{Revisiting Hybridization Kinetics with Improved Elementary Step Simulation}},
booktitle = {29th International Conference on DNA Computing and Molecular Programming (DNA 29)},
pages = {5:1--5:24},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-297-6},
ISSN = {1868-8969},
year = {2023},
volume = {276},
editor = {Chen, Ho-Lin and Evans, Constantine G.},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.29.5},
URN = {urn:nbn:de:0030-drops-187889},
doi = {10.4230/LIPIcs.DNA.29.5},
annote = {Keywords: DNA reaction kinetics, kinetic model calibration, simulation-based Bayesian inference, continuous-time Markov chains}
}
@InProceedings{earley:LIPIcs.DNA.29.6,
author = {Earley, Hannah Amelie},
title = {{Reversible Bond Logic}},
booktitle = {29th International Conference on DNA Computing and Molecular Programming (DNA 29)},
pages = {6:1--6:23},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-297-6},
ISSN = {1868-8969},
year = {2023},
volume = {276},
editor = {Chen, Ho-Lin and Evans, Constantine G.},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.29.6},
URN = {urn:nbn:de:0030-drops-187893},
doi = {10.4230/LIPIcs.DNA.29.6},
annote = {Keywords: Molecular Programming, Reversible Computing, Structural Manipulation}
}
@InProceedings{doty_et_al:LIPIcs.DNA.29.7,
author = {Doty, David and Fleming, Hunter and Hader, Daniel and Patitz, Matthew J. and Vaughan, Lukas A.},
title = {{Accelerating Self-Assembly of Crisscross Slat Systems}},
booktitle = {29th International Conference on DNA Computing and Molecular Programming (DNA 29)},
pages = {7:1--7:23},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-297-6},
ISSN = {1868-8969},
year = {2023},
volume = {276},
editor = {Chen, Ho-Lin and Evans, Constantine G.},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.29.7},
URN = {urn:nbn:de:0030-drops-187908},
doi = {10.4230/LIPIcs.DNA.29.7},
annote = {Keywords: DNA origami, self-assembly, kinetic modeling, computational modeling}
}
@InProceedings{petrack_et_al:LIPIcs.DNA.29.8,
author = {Petrack, Joshua and Soloveichik, David and Doty, David},
title = {{Thermodynamically Driven Signal Amplification}},
booktitle = {29th International Conference on DNA Computing and Molecular Programming (DNA 29)},
pages = {8:1--8:22},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-297-6},
ISSN = {1868-8969},
year = {2023},
volume = {276},
editor = {Chen, Ho-Lin and Evans, Constantine G.},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.29.8},
URN = {urn:nbn:de:0030-drops-187917},
doi = {10.4230/LIPIcs.DNA.29.8},
annote = {Keywords: Thermodynamic binding networks, signal amplification, integer programming}
}
@InProceedings{luchsinger_et_al:LIPIcs.DNA.29.9,
author = {Luchsinger, Austin and Doty, David and Soloveichik, David},
title = {{Optimal Information Encoding in Chemical Reaction Networks}},
booktitle = {29th International Conference on DNA Computing and Molecular Programming (DNA 29)},
pages = {9:1--9:16},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-297-6},
ISSN = {1868-8969},
year = {2023},
volume = {276},
editor = {Chen, Ho-Lin and Evans, Constantine G.},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.29.9},
URN = {urn:nbn:de:0030-drops-187920},
doi = {10.4230/LIPIcs.DNA.29.9},
annote = {Keywords: chemical reaction networks, Kolmogorov complexity, stable computation}
}
@InProceedings{alaniz_et_al:LIPIcs.DNA.29.10,
author = {Alaniz, Robert M. and Brunner, Josh and Coulombe, Michael and Demaine, Erik D. and Diomidova, Jenny and Gomez, Timothy and Grizzell, Elise and Knobel, Ryan and Lynch, Jayson and Rodriguez, Andrew and Schweller, Robert and Wylie, Tim},
title = {{Complexity of Reconfiguration in Surface Chemical Reaction Networks}},
booktitle = {29th International Conference on DNA Computing and Molecular Programming (DNA 29)},
pages = {10:1--10:18},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-297-6},
ISSN = {1868-8969},
year = {2023},
volume = {276},
editor = {Chen, Ho-Lin and Evans, Constantine G.},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.DNA.29.10},
URN = {urn:nbn:de:0030-drops-187936},
doi = {10.4230/LIPIcs.DNA.29.10},
annote = {Keywords: Chemical Reaction Networks, reconfiguration, hardness}
}
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