@Proceedings{bocker_et_al:OASIcs.GCB.2012,
title = {{OASIcs, Volume 26, GCB'12, Complete Volume}},
booktitle = {German Conference on Bioinformatics 2012},
series = {Open Access Series in Informatics (OASIcs)},
ISBN = {978-3-939897-44-6},
ISSN = {2190-6807},
year = {2012},
volume = {26},
editor = {B\"{o}cker, Sebastian and Hufsky, Franziska and Scheubert, Kerstin and Schleicher, Jana and Schuster, Stefan},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.GCB.2012},
URN = {urn:nbn:de:0030-drops-37269},
doi = {10.4230/OASIcs.GCB.2012},
annote = {Keywords: Life and Medical Sciences}
}
@InProceedings{bocker_et_al:OASIcs.GCB.2012.i,
author = {B\"{o}cker, Sebastian and Hufsky, Franziska and Scheubert, Kerstin and Schleicher, Jana and Schuster, Stefan},
title = {{Frontmatter, Table of Contents, Preface, Programm Committee, Supportes and Sponsors, Index of Authors}},
booktitle = {German Conference on Bioinformatics 2012},
pages = {i--xiv},
series = {Open Access Series in Informatics (OASIcs)},
ISBN = {978-3-939897-44-6},
ISSN = {2190-6807},
year = {2012},
volume = {26},
editor = {B\"{o}cker, Sebastian and Hufsky, Franziska and Scheubert, Kerstin and Schleicher, Jana and Schuster, Stefan},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.GCB.2012.i},
URN = {urn:nbn:de:0030-drops-37121},
doi = {10.4230/OASIcs.GCB.2012.i},
annote = {Keywords: Frontmatter, Table of Contents, Preface, Programm Committee, Supportes and Sponsors, Index of Authors}
}
@InProceedings{hoppe_et_al:OASIcs.GCB.2012.1,
author = {Hoppe, Andreas and Holzh\"{u}tter, Hermann-Georg},
title = {{ModeScore: A Method to Infer Changed Activity of Metabolic Function from Transcript Profiles}},
booktitle = {German Conference on Bioinformatics 2012},
pages = {1--11},
series = {Open Access Series in Informatics (OASIcs)},
ISBN = {978-3-939897-44-6},
ISSN = {2190-6807},
year = {2012},
volume = {26},
editor = {B\"{o}cker, Sebastian and Hufsky, Franziska and Scheubert, Kerstin and Schleicher, Jana and Schuster, Stefan},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.GCB.2012.1},
URN = {urn:nbn:de:0030-drops-37134},
doi = {10.4230/OASIcs.GCB.2012.1},
annote = {Keywords: Metabolic network, expression profile, metabolic function}
}
@InProceedings{hufsky_et_al:OASIcs.GCB.2012.12,
author = {Hufsky, Franziska and B\"{o}cker, Sebastian},
title = {{Comparing Fragmentation Trees from Electron Impact Mass Spectra with Annotated Fragmentation Pathways}},
booktitle = {German Conference on Bioinformatics 2012},
pages = {12--22},
series = {Open Access Series in Informatics (OASIcs)},
ISBN = {978-3-939897-44-6},
ISSN = {2190-6807},
year = {2012},
volume = {26},
editor = {B\"{o}cker, Sebastian and Hufsky, Franziska and Scheubert, Kerstin and Schleicher, Jana and Schuster, Stefan},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.GCB.2012.12},
URN = {urn:nbn:de:0030-drops-37146},
doi = {10.4230/OASIcs.GCB.2012.12},
annote = {Keywords: metabolomics, GC-MS, computational mass spectrometry, fragmentation trees}
}
@InProceedings{ludwig_et_al:OASIcs.GCB.2012.23,
author = {Ludwig, Marcus and Hufsky, Franziska and Elshamy, Samy and B\"{o}cker, Sebastian},
title = {{Finding Characteristic Substructures for Metabolite Classes}},
booktitle = {German Conference on Bioinformatics 2012},
pages = {23--38},
series = {Open Access Series in Informatics (OASIcs)},
ISBN = {978-3-939897-44-6},
ISSN = {2190-6807},
year = {2012},
volume = {26},
editor = {B\"{o}cker, Sebastian and Hufsky, Franziska and Scheubert, Kerstin and Schleicher, Jana and Schuster, Stefan},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.GCB.2012.23},
URN = {urn:nbn:de:0030-drops-37157},
doi = {10.4230/OASIcs.GCB.2012.23},
annote = {Keywords: metabolites, substructure prediction, mass spectrometry, FT-BLAST}
}
@InProceedings{chernyavsky_et_al:OASIcs.GCB.2012.39,
author = {Chernyavsky, Ilya and Alexandrov, Theodore and Maass, Peter and Nikolenko, Sergey I.},
title = {{A Two-Step Soft Segmentation Procedure for MALDI Imaging Mass Spectrometry Data}},
booktitle = {German Conference on Bioinformatics 2012},
pages = {39--48},
series = {Open Access Series in Informatics (OASIcs)},
ISBN = {978-3-939897-44-6},
ISSN = {2190-6807},
year = {2012},
volume = {26},
editor = {B\"{o}cker, Sebastian and Hufsky, Franziska and Scheubert, Kerstin and Schleicher, Jana and Schuster, Stefan},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.GCB.2012.39},
URN = {urn:nbn:de:0030-drops-37163},
doi = {10.4230/OASIcs.GCB.2012.39},
annote = {Keywords: MALDI imaging mass spectrometry, hyperspectral image segmentation, probabilistic graphical models, latent Dirichlet allocation, Markov random field}
}
@InProceedings{koster_et_al:OASIcs.GCB.2012.49,
author = {K\"{o}ster, Johannes and Rahmann, Sven},
title = {{Building and Documenting Workflows with Python-Based Snakemake}},
booktitle = {German Conference on Bioinformatics 2012},
pages = {49--56},
series = {Open Access Series in Informatics (OASIcs)},
ISBN = {978-3-939897-44-6},
ISSN = {2190-6807},
year = {2012},
volume = {26},
editor = {B\"{o}cker, Sebastian and Hufsky, Franziska and Scheubert, Kerstin and Schleicher, Jana and Schuster, Stefan},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.GCB.2012.49},
URN = {urn:nbn:de:0030-drops-37179},
doi = {10.4230/OASIcs.GCB.2012.49},
annote = {Keywords: workflow engine, dependency graph, knapsack problem, Python, high-throughput sequencing, next-generation sequencing}
}
@InProceedings{rottger_et_al:OASIcs.GCB.2012.57,
author = {R\"{o}ttger, Richard and Kreutzer, Christoph and Vu, Thuy Duong and Wittkop, Tobias and Baumbach, Jan},
title = {{Online Transitivity Clustering of Biological Data with Missing Values}},
booktitle = {German Conference on Bioinformatics 2012},
pages = {57--68},
series = {Open Access Series in Informatics (OASIcs)},
ISBN = {978-3-939897-44-6},
ISSN = {2190-6807},
year = {2012},
volume = {26},
editor = {B\"{o}cker, Sebastian and Hufsky, Franziska and Scheubert, Kerstin and Schleicher, Jana and Schuster, Stefan},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.GCB.2012.57},
URN = {urn:nbn:de:0030-drops-37189},
doi = {10.4230/OASIcs.GCB.2012.57},
annote = {Keywords: Transitivity Clustering, Large Scale clustering, Missing Values, Web Interface}
}
@InProceedings{pesch_et_al:OASIcs.GCB.2012.69,
author = {Pesch, Robert and B\"{o}ck, Matthias and Zimmer, Ralf},
title = {{ConReg: Analysis and Visualization of Conserved Regulatory Networks in Eukaryotes}},
booktitle = {German Conference on Bioinformatics 2012},
pages = {69--81},
series = {Open Access Series in Informatics (OASIcs)},
ISBN = {978-3-939897-44-6},
ISSN = {2190-6807},
year = {2012},
volume = {26},
editor = {B\"{o}cker, Sebastian and Hufsky, Franziska and Scheubert, Kerstin and Schleicher, Jana and Schuster, Stefan},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.GCB.2012.69},
URN = {urn:nbn:de:0030-drops-37194},
doi = {10.4230/OASIcs.GCB.2012.69},
annote = {Keywords: web application, evolutionary biology, regulatory networks, text-mining}
}
@InProceedings{daddario_et_al:OASIcs.GCB.2012.82,
author = {D'Addario, Marianna and Kriege, Nils and Rahmann, Sven},
title = {{Designing q-Unique DNA Sequences with Integer Linear Programs and Euler Tours in De Bruijn Graphs}},
booktitle = {German Conference on Bioinformatics 2012},
pages = {82--92},
series = {Open Access Series in Informatics (OASIcs)},
ISBN = {978-3-939897-44-6},
ISSN = {2190-6807},
year = {2012},
volume = {26},
editor = {B\"{o}cker, Sebastian and Hufsky, Franziska and Scheubert, Kerstin and Schleicher, Jana and Schuster, Stefan},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.GCB.2012.82},
URN = {urn:nbn:de:0030-drops-37200},
doi = {10.4230/OASIcs.GCB.2012.82},
annote = {Keywords: DNA sequence design, De Bruijn graph, quotient graph, reverse complement, Euler graph, Euler tour}
}
@InProceedings{kottenhagen_et_al:OASIcs.GCB.2012.93,
author = {Kottenhagen, Nina and Gramzow, Lydia and Horn, Fabian and Pohl, Martin and Thei{\ss}en, G\"{u}nter},
title = {{Polyglutamine and Polyalanine Tracts Are Enriched in Transcription Factors of Plants}},
booktitle = {German Conference on Bioinformatics 2012},
pages = {93--107},
series = {Open Access Series in Informatics (OASIcs)},
ISBN = {978-3-939897-44-6},
ISSN = {2190-6807},
year = {2012},
volume = {26},
editor = {B\"{o}cker, Sebastian and Hufsky, Franziska and Scheubert, Kerstin and Schleicher, Jana and Schuster, Stefan},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.GCB.2012.93},
URN = {urn:nbn:de:0030-drops-37217},
doi = {10.4230/OASIcs.GCB.2012.93},
annote = {Keywords: tandem repeats, molecular evolution, GO annotation}
}
@InProceedings{schafer_et_al:OASIcs.GCB.2012.108,
author = {Sch\"{a}fer, Tim and May, Patrick and Koch, Ina},
title = {{Computation and Visualization of Protein Topology Graphs Including Ligand Information}},
booktitle = {German Conference on Bioinformatics 2012},
pages = {108--118},
series = {Open Access Series in Informatics (OASIcs)},
ISBN = {978-3-939897-44-6},
ISSN = {2190-6807},
year = {2012},
volume = {26},
editor = {B\"{o}cker, Sebastian and Hufsky, Franziska and Scheubert, Kerstin and Schleicher, Jana and Schuster, Stefan},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.GCB.2012.108},
URN = {urn:nbn:de:0030-drops-37226},
doi = {10.4230/OASIcs.GCB.2012.108},
annote = {Keywords: protein structure, graph theory, ligand, secondary structure, protein ligang graph}
}
@InProceedings{esmaielbeiki_et_al:OASIcs.GCB.2012.119,
author = {Esmaielbeiki, Reyhaneh and Nebel, Jean-Christophe},
title = {{Unbiased Protein Interface Prediction Based on Ligand Diversity Quantification}},
booktitle = {German Conference on Bioinformatics 2012},
pages = {119--130},
series = {Open Access Series in Informatics (OASIcs)},
ISBN = {978-3-939897-44-6},
ISSN = {2190-6807},
year = {2012},
volume = {26},
editor = {B\"{o}cker, Sebastian and Hufsky, Franziska and Scheubert, Kerstin and Schleicher, Jana and Schuster, Stefan},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.GCB.2012.119},
URN = {urn:nbn:de:0030-drops-37235},
doi = {10.4230/OASIcs.GCB.2012.119},
annote = {Keywords: Protein-protein interaction, protein interface prediction, homology modeling}
}
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