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Documents authored by Fu, Bin

Document
Brief Announcement
DOI: 10.4230/LIPIcs.SAND.2025.23
Brief Announcement: Reachability in Deletion-Only Chemical Reaction Networks

Authors: Bin Fu, Timothy Gomez, Ryan Knobel, Austin Luchsinger, Aiden Massie, Marco Rodriguez, Adrian Salinas, Robert Schweller, and Tim Wylie

Published in: LIPIcs, Volume 330, 4th Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2025)

Abstract
For general discrete Chemical Reaction Networks (CRNs), the fundamental problem of reachability - the question of whether a target configuration can be produced from a given initial configuration - was recently shown to be Ackermann-complete. However, many open questions remain about which features of the CRN model drive this complexity. We study a restricted class of CRNs with void rules, reactions that only decrease species counts. We further examine this regime in the motivated model of step CRNs, which allow additional species to be introduced in discrete stages. With and without steps, we characterize the complexity of the reachability problem for CRNs with void rules. We show that, without steps, reachability remains polynomial-time solvable for bimolecular systems but becomes NP-complete for larger reactions. Conversely, with just a single step, reachability becomes NP-complete even for bimolecular systems. Beyond what is contained in this brief announcement, we also investigate optimization variants of reachability, provide approximation results for maximizing species deletion, establish ETH-based lower bounds for NP-complete cases, and prove hardness for counting reaction sequences.
Cite as

Bin Fu, Timothy Gomez, Ryan Knobel, Austin Luchsinger, Aiden Massie, Marco Rodriguez, Adrian Salinas, Robert Schweller, and Tim Wylie. Brief Announcement: Reachability in Deletion-Only Chemical Reaction Networks. In 4th Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 330, pp. 23:1-23:6, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{fu_et_al:LIPIcs.SAND.2025.23,
  author =	{Fu, Bin and Gomez, Timothy and Knobel, Ryan and Luchsinger, Austin and Massie, Aiden and Rodriguez, Marco and Salinas, Adrian and Schweller, Robert and Wylie, Tim},
  title =	{{Brief Announcement: Reachability in Deletion-Only Chemical Reaction Networks}},
  booktitle =	{4th Symposium on Algorithmic Foundations of Dynamic Networks (SAND 2025)},
  pages =	{23:1--23:6},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-368-3},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{330},
  editor =	{Meeks, Kitty and Scheideler, Christian},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SAND.2025.23},
  URN =		{urn:nbn:de:0030-drops-230768},
  doi =		{10.4230/LIPIcs.SAND.2025.23},
  annote =	{Keywords: CRN, Chemical Reaction Network, Reachability, Void Reactions}
}
Document
DOI: 10.4230/LIPIcs.ISAAC.2018.31
New Algorithms for Edge Induced König-Egerváry Subgraph Based on Gallai-Edmonds Decomposition

Authors: Qilong Feng, Guanlan Tan, Senmin Zhu, Bin Fu, and Jianxin Wang

Published in: LIPIcs, Volume 123, 29th International Symposium on Algorithms and Computation (ISAAC 2018)

Abstract
König-Egerváry graphs form an important graph class which has been studied extensively in graph theory. Much attention has also been paid on König-Egerváry subgraphs and König-Egerváry graph modification problems. In this paper, we focus on one König-Egerváry subgraph problem, called the Maximum Edge Induced König Subgraph problem. By exploiting the classical Gallai-Edmonds decomposition, we establish connections between minimum vertex cover, Gallai-Edmonds decomposition structure, maximum matching, maximum bisection, and König-Egerváry subgraph structure. We obtain a new structural property of König-Egerváry subgraph: every graph G=(V, E) has an edge induced König-Egerváry subgraph with at least 2|E|/3 edges. Based on the new structural property proposed, an approximation algorithm with ratio 10/7 for the Maximum Edge Induced König Subgraph problem is presented, improving the current best ratio of 5/3. To the best of our knowledge, this paper is the first one establishing the connection between Gallai-Edmonds decomposition and König-Egerváry graphs. Using 2|E|/3 as a lower bound, we define the Edge Induced König Subgraph above lower bound problem, and give a kernel of at most 30k edges for the problem.
Cite as

Qilong Feng, Guanlan Tan, Senmin Zhu, Bin Fu, and Jianxin Wang. New Algorithms for Edge Induced König-Egerváry Subgraph Based on Gallai-Edmonds Decomposition. In 29th International Symposium on Algorithms and Computation (ISAAC 2018). Leibniz International Proceedings in Informatics (LIPIcs), Volume 123, pp. 31:1-31:12, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2018)

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@InProceedings{feng_et_al:LIPIcs.ISAAC.2018.31,
  author =	{Feng, Qilong and Tan, Guanlan and Zhu, Senmin and Fu, Bin and Wang, Jianxin},
  title =	{{New Algorithms for Edge Induced K\"{o}nig-Egerv\'{a}ry Subgraph Based on Gallai-Edmonds Decomposition}},
  booktitle =	{29th International Symposium on Algorithms and Computation (ISAAC 2018)},
  pages =	{31:1--31:12},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-094-1},
  ISSN =	{1868-8969},
  year =	{2018},
  volume =	{123},
  editor =	{Hsu, Wen-Lian and Lee, Der-Tsai and Liao, Chung-Shou},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ISAAC.2018.31},
  URN =		{urn:nbn:de:0030-drops-99790},
  doi =		{10.4230/LIPIcs.ISAAC.2018.31},
  annote =	{Keywords: K\"{o}nig-Egerv\'{a}ry graph, Gallai-Edmonds decomposition}
}
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