2 Search Results for "Cardona, Robert"

Document

DOI: 10.4230/LIPIcs.AofA.2024.8

Galled Tree-Child Networks

Authors: Yu-Sheng Chang, Michael Fuchs, and Guan-Ru Yu

Published in: LIPIcs, Volume 302, 35th International Conference on Probabilistic, Combinatorial and Asymptotic Methods for the Analysis of Algorithms (AofA 2024)

Abstract

We propose the class of galled tree-child networks which is obtained as intersection of the classes of galled networks and tree-child networks. For the latter two classes, (asymptotic) counting results and stochastic results have been proved with very different methods. We show that a counting result for the class of galled tree-child networks follows with similar tools as used for galled networks, however, the result has a similar pattern as the one for tree-child networks. In addition, we also consider the (suitably scaled) numbers of reticulation nodes of random galled tree-child networks and show that they are asymptotically normal distributed. This is in contrast to the limit laws of the corresponding quantities for galled networks and tree-child networks which have been both shown to be discrete.

Cite as

Yu-Sheng Chang, Michael Fuchs, and Guan-Ru Yu. Galled Tree-Child Networks. In 35th International Conference on Probabilistic, Combinatorial and Asymptotic Methods for the Analysis of Algorithms (AofA 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 302, pp. 8:1-8:13, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

Copy BibTex To Clipboard

@InProceedings{chang_et_al:LIPIcs.AofA.2024.8,
  author =	{Chang, Yu-Sheng and Fuchs, Michael and Yu, Guan-Ru},
  title =	{{Galled Tree-Child Networks}},
  booktitle =	{35th International Conference on Probabilistic, Combinatorial and Asymptotic Methods for the Analysis of Algorithms (AofA 2024)},
  pages =	{8:1--8:13},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-329-4},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{302},
  editor =	{Mailler, C\'{e}cile and Wild, Sebastian},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.AofA.2024.8},
  URN =		{urn:nbn:de:0030-drops-204439},
  doi =		{10.4230/LIPIcs.AofA.2024.8},
  annote =	{Keywords: Phylogenetic Network, galled Network, tree-child Network, asymptotic Enumeration, Limit Law, Lagrange Inversion}
}

Document

DOI: 10.4230/LIPIcs.SoCG.2022.24

The Universal 𝓁^p-Metric on Merge Trees

Authors: Robert Cardona, Justin Curry, Tung Lam, and Michael Lesnick

Published in: LIPIcs, Volume 224, 38th International Symposium on Computational Geometry (SoCG 2022)

Abstract

Adapting a definition given by Bjerkevik and Lesnick for multiparameter persistence modules, we introduce an 𝓁^p-type extension of the interleaving distance on merge trees. We show that our distance is a metric, and that it upper-bounds the p-Wasserstein distance between the associated barcodes. For each p ∈ [1,∞], we prove that this distance is stable with respect to cellular sublevel filtrations and that it is the universal (i.e., largest) distance satisfying this stability property. In the p = ∞ case, this gives a novel proof of universality for the interleaving distance on merge trees.

Cite as

Robert Cardona, Justin Curry, Tung Lam, and Michael Lesnick. The Universal 𝓁^p-Metric on Merge Trees. In 38th International Symposium on Computational Geometry (SoCG 2022). Leibniz International Proceedings in Informatics (LIPIcs), Volume 224, pp. 24:1-24:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2022)

Copy BibTex To Clipboard

@InProceedings{cardona_et_al:LIPIcs.SoCG.2022.24,
  author =	{Cardona, Robert and Curry, Justin and Lam, Tung and Lesnick, Michael},
  title =	{{The Universal 𝓁^p-Metric on Merge Trees}},
  booktitle =	{38th International Symposium on Computational Geometry (SoCG 2022)},
  pages =	{24:1--24:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-227-3},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{224},
  editor =	{Goaoc, Xavier and Kerber, Michael},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2022.24},
  URN =		{urn:nbn:de:0030-drops-160325},
  doi =		{10.4230/LIPIcs.SoCG.2022.24},
  annote =	{Keywords: merge trees, hierarchical clustering, persistent homology, Wasserstein distances, interleavings}
}

Refine by Author
1 Cardona, Robert
1 Chang, Yu-Sheng
1 Curry, Justin
1 Fuchs, Michael
1 Lam, Tung
Show More...

Refine by Classification
1 Mathematics of computing → Algebraic topology
1 Mathematics of computing → Distribution functions
1 Mathematics of computing → Enumeration
1 Theory of computation → Computational geometry
1 Theory of computation → Unsupervised learning and clustering

Refine by Keyword
1 Lagrange Inversion
1 Limit Law
1 Phylogenetic Network
1 Wasserstein distances
1 asymptotic Enumeration
Show More...

Refine by Type
2 document

Refine by Publication Year
1 2022
1 2024