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The Heaviest Induced Ancestors Problem Revisited

Authors Paniz Abedin, Sahar Hooshmand, Arnab Ganguly, Sharma V. Thankachan



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Author Details

Paniz Abedin
  • Dept. of Computer Science, University of Central Florida - Orlando, USA
Sahar Hooshmand
  • Dept. of Computer Science, University of Central Florida - Orlando, USA
Arnab Ganguly
  • Dept. of Computer Science, University of Wisconsin - Whitewater, USA
Sharma V. Thankachan
  • Dept. of Computer Science, University of Central Florida - Orlando, USA

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Paniz Abedin, Sahar Hooshmand, Arnab Ganguly, and Sharma V. Thankachan. The Heaviest Induced Ancestors Problem Revisited. In 29th Annual Symposium on Combinatorial Pattern Matching (CPM 2018). Leibniz International Proceedings in Informatics (LIPIcs), Volume 105, pp. 20:1-20:13, Schloss Dagstuhl - Leibniz-Zentrum für Informatik (2018)
https://doi.org/10.4230/LIPIcs.CPM.2018.20

Abstract

We revisit the heaviest induced ancestors problem, which has several interesting applications in string matching. Let T_1 and T_2 be two weighted trees, where the weight W(u) of a node u in either of the two trees is more than the weight of u's parent. Additionally, the leaves in both trees are labeled and the labeling of the leaves in T_2 is a permutation of those in T_1. A node x in T_1 and a node y in T_2 are induced, iff their subtree have at least one common leaf label. A heaviest induced ancestor query HIA(u_1,u_2) is: given a node u_1 in T_1 and a node u_2 in T_2, output the pair (u_1^*,u_2^*) of induced nodes with the highest combined weight W(u^*_1) + W(u^*_2), such that u_1^* is an ancestor of u_1 and u^*_2 is an ancestor of u_2. Let n be the number of nodes in both trees combined and epsilon >0 be an arbitrarily small constant. Gagie et al. [CCCG' 13] introduced this problem and proposed three solutions with the following space-time trade-offs: - an O(n log^2n)-word data structure with O(log n log log n) query time - an O(n log n)-word data structure with O(log^2 n) query time - an O(n)-word data structure with O(log^{3+epsilon}n) query time. In this paper, we revisit this problem and present new data structures, with improved bounds. Our results are as follows. - an O(n log n)-word data structure with O(log n log log n) query time - an O(n)-word data structure with O(log^2 n/log log n) query time. As a corollary, we also improve the LZ compressed index of Gagie et al. [CCCG' 13] for answering longest common substring (LCS) queries. Additionally, we show that the LCS after one edit problem of size n [Amir et al., SPIRE' 17] can also be reduced to the heaviest induced ancestors problem over two trees of n nodes in total. This yields a straightforward improvement over its current solution of O(n log^3 n) space and O(log^3 n) query time.

Subject Classification

ACM Subject Classification
  • Theory of computation → Pattern matching
Keywords
  • Data Structure
  • String Algorithms
  • Orthogonal Range Queries

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References

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