BibTeX Export for WABI 2019

Copy to Clipboard Download

@Proceedings{huber_et_al:LIPIcs.WABI.2019,
  title =	{{LIPIcs, Volume 143, WABI'19, Complete Volume}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019},
  URN =		{urn:nbn:de:0030-drops-112994},
  doi =		{10.4230/LIPIcs.WABI.2019},
  annote =	{Keywords: Applied computing, Bioinformatics; Theory of computation, Design and analysis of algorithms; Mathematics of computing, Probabilistic inference problem}
}
@InProceedings{huber_et_al:LIPIcs.WABI.2019.0,
  author =	{Huber, Katharina T. and Gusfield, Dan},
  title =	{{Front Matter, Table of Contents, Preface, Conference Organization}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{0:i--0:xii},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.0},
  URN =		{urn:nbn:de:0030-drops-110307},
  doi =		{10.4230/LIPIcs.WABI.2019.0},
  annote =	{Keywords: Front Matter, Table of Contents, Preface, Conference Organization}
}
@InProceedings{jansson_et_al:LIPIcs.WABI.2019.1,
  author =	{Jansson, Jesper and Mampentzidis, Konstantinos and T. P., Sandhya},
  title =	{{Building a Small and Informative Phylogenetic Supertree}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{1:1--1:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.1},
  URN =		{urn:nbn:de:0030-drops-110316},
  doi =		{10.4230/LIPIcs.WABI.2019.1},
  annote =	{Keywords: phylogenetic tree, supertree, rooted triplet, approximation algorithm}
}
@InProceedings{wittler:LIPIcs.WABI.2019.2,
  author =	{Wittler, Roland},
  title =	{{Alignment- and Reference-Free Phylogenomics with Colored de Bruijn Graphs}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{2:1--2:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.2},
  URN =		{urn:nbn:de:0030-drops-110325},
  doi =		{10.4230/LIPIcs.WABI.2019.2},
  annote =	{Keywords: Phylogenomics, phylogenetics, phylogenetic splits, colored de Bruijn graphs}
}
@InProceedings{clement:LIPIcs.WABI.2019.3,
  author =	{Clement, Nathan L.},
  title =	{{Quantified Uncertainty of Flexible Protein-Protein Docking Algorithms}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{3:1--3:12},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.3},
  URN =		{urn:nbn:de:0030-drops-110335},
  doi =		{10.4230/LIPIcs.WABI.2019.3},
  annote =	{Keywords: protein-protein docking, uncertainty quantification, protein flexibility, low-discrepancy sampling, high-dimensional sampling}
}
@InProceedings{christensen_et_al:LIPIcs.WABI.2019.4,
  author =	{Christensen, Sarah and Molloy, Erin K. and Vachaspati, Pranjal and Warnow, Tandy},
  title =	{{TRACTION: Fast Non-Parametric Improvement of Estimated Gene Trees}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{4:1--4:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.4},
  URN =		{urn:nbn:de:0030-drops-110347},
  doi =		{10.4230/LIPIcs.WABI.2019.4},
  annote =	{Keywords: Gene tree correction, horizontal gene transfer, incomplete lineage sorting}
}
@InProceedings{yamada_et_al:LIPIcs.WABI.2019.5,
  author =	{Yamada, Kohei and Chen, Zhi-Zhong and Wang, Lusheng},
  title =	{{Better Practical Algorithms for rSPR Distance and Hybridization Number}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{5:1--5:12},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.5},
  URN =		{urn:nbn:de:0030-drops-110355},
  doi =		{10.4230/LIPIcs.WABI.2019.5},
  annote =	{Keywords: phylogenetic tree, fixed-parameter algorithms, approximation algorithms, Monte Carlo tree search}
}
@InProceedings{georgiev_et_al:LIPIcs.WABI.2019.6,
  author =	{Georgiev, Georgi D. and Dodd, Kevin F. and Chen, Brian Y.},
  title =	{{pClay: A Precise Parallel Algorithm for Comparing Molecular Surfaces}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{6:1--6:13},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.6},
  URN =		{urn:nbn:de:0030-drops-110365},
  doi =		{10.4230/LIPIcs.WABI.2019.6},
  annote =	{Keywords: Specificity Annotation, Structure Comparison, Cavity Analysis}
}
@InProceedings{vaddadi_et_al:LIPIcs.WABI.2019.7,
  author =	{Vaddadi, Kavya and Srinivasan, Rajgopal and Sivadasan, Naveen},
  title =	{{Read Mapping on Genome Variation Graphs}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{7:1--7:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.7},
  URN =		{urn:nbn:de:0030-drops-110375},
  doi =		{10.4230/LIPIcs.WABI.2019.7},
  annote =	{Keywords: read mapping, pangenome, genome variation graphs, locality sensitive hashing}
}
@InProceedings{alanko_et_al:LIPIcs.WABI.2019.8,
  author =	{Alanko, Jarno and Bannai, Hideo and Cazaux, Bastien and Peterlongo, Pierre and Stoye, Jens},
  title =	{{Finding All Maximal Perfect Haplotype Blocks in Linear Time}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{8:1--8:9},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.8},
  URN =		{urn:nbn:de:0030-drops-110388},
  doi =		{10.4230/LIPIcs.WABI.2019.8},
  annote =	{Keywords: Population genomics, selection coefficient, haplotype block, positional Burrows-Wheeler Transform}
}
@InProceedings{zoller_et_al:LIPIcs.WABI.2019.9,
  author =	{Zoller, Roni and Zehavi, Meirav and Ziv-Ukelson, Michal},
  title =	{{A New Paradigm for Identifying Reconciliation-Scenario Altering Mutations Conferring Environmental Adaptation}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{9:1--9:13},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.9},
  URN =		{urn:nbn:de:0030-drops-110398},
  doi =		{10.4230/LIPIcs.WABI.2019.9},
  annote =	{Keywords: Gene tree, Species tree, Reconciliation}
}
@InProceedings{liu_et_al:LIPIcs.WABI.2019.10,
  author =	{Liu, Jie and Huang, Yuanhao and Singh, Ritambhara and Vert, Jean-Philippe and Noble, William Stafford},
  title =	{{Jointly Embedding Multiple Single-Cell Omics Measurements}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{10:1--10:13},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.10},
  URN =		{urn:nbn:de:0030-drops-110401},
  doi =		{10.4230/LIPIcs.WABI.2019.10},
  annote =	{Keywords: Manifold alignment, single-cell sequencing}
}
@InProceedings{cauer_et_al:LIPIcs.WABI.2019.11,
  author =	{Cauer, Alexandra Gesine and Yard{\i}mc{\i}, G\"{u}rkan and Vert, Jean-Philippe and Varoquaux, Nelle and Noble, William Stafford},
  title =	{{Inferring Diploid 3D Chromatin Structures from Hi-C Data}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{11:1--11:13},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.11},
  URN =		{urn:nbn:de:0030-drops-110418},
  doi =		{10.4230/LIPIcs.WABI.2019.11},
  annote =	{Keywords: Genome 3D architecture, chromatin structure, Hi-C, 3D modeling}
}
@InProceedings{markin_et_al:LIPIcs.WABI.2019.12,
  author =	{Markin, Alexey and Eulenstein, Oliver},
  title =	{{Consensus Clusters in Robinson-Foulds Reticulation Networks}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{12:1--12:12},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.12},
  URN =		{urn:nbn:de:0030-drops-110420},
  doi =		{10.4230/LIPIcs.WABI.2019.12},
  annote =	{Keywords: Phylogenetics, phylogenetic tree, phylogenetic network, reticulation network, Robinson-Foulds, Pareto, RF-Net}
}
@InProceedings{simonaitis_et_al:LIPIcs.WABI.2019.13,
  author =	{Simonaitis, Pijus and Chateau, Annie and Swenson, Krister M.},
  title =	{{Weighted Minimum-Length Rearrangement Scenarios}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{13:1--13:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.13},
  URN =		{urn:nbn:de:0030-drops-110436},
  doi =		{10.4230/LIPIcs.WABI.2019.13},
  annote =	{Keywords: Weighted genome rearrangement, Double cut and join (DCJ), Edge switch, Minimum-weight quadrangulation}
}
@InProceedings{miladi_et_al:LIPIcs.WABI.2019.14,
  author =	{Miladi, Milad and Raden, Martin and Will, Sebastian and Backofen, Rolf},
  title =	{{Fast and Accurate Structure Probability Estimation for Simultaneous Alignment and Folding of RNAs}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{14:1--14:13},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.14},
  URN =		{urn:nbn:de:0030-drops-110446},
  doi =		{10.4230/LIPIcs.WABI.2019.14},
  annote =	{Keywords: RNA secondary structure, Structural bioinformatics, Alignment, Algorithms}
}
@InProceedings{xin_et_al:LIPIcs.WABI.2019.15,
  author =	{Xin, Hongyi and Shao, Mingfu and Kingsford, Carl},
  title =	{{Context-Aware Seeds for Read Mapping}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{15:1--15:13},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.15},
  URN =		{urn:nbn:de:0030-drops-110452},
  doi =		{10.4230/LIPIcs.WABI.2019.15},
  annote =	{Keywords: Read Mapping, Seed and Extend, Edit Distance, Suffix Trie}
}
@InProceedings{tiskin:LIPIcs.WABI.2019.16,
  author =	{Tiskin, Alexander},
  title =	{{Bounded-Length Smith-Waterman Alignment}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{16:1--16:12},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.16},
  URN =		{urn:nbn:de:0030-drops-110461},
  doi =		{10.4230/LIPIcs.WABI.2019.16},
  annote =	{Keywords: sequence alignment, local alignment, Smith, Waterman alignment, matrix searching}
}
@InProceedings{jain_et_al:LIPIcs.WABI.2019.17,
  author =	{Jain, Chirag and Zhang, Haowen and Dilthey, Alexander and Aluru, Srinivas},
  title =	{{Validating Paired-End Read Alignments in Sequence Graphs}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{17:1--17:13},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.17},
  URN =		{urn:nbn:de:0030-drops-110470},
  doi =		{10.4230/LIPIcs.WABI.2019.17},
  annote =	{Keywords: Sequence graphs, read mapping, index, sparse matrix-matrix multiplication}
}
@InProceedings{qiu_et_al:LIPIcs.WABI.2019.18,
  author =	{Qiu, Yutong and Ma, Cong and Xie, Han and Kingsford, Carl},
  title =	{{Detecting Transcriptomic Structural Variants in Heterogeneous Contexts via the Multiple Compatible Arrangements Problem}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{18:1--18:5},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.18},
  URN =		{urn:nbn:de:0030-drops-110483},
  doi =		{10.4230/LIPIcs.WABI.2019.18},
  annote =	{Keywords: transcriptomic structural variation, integer linear programming, heterogeneity}
}
@InProceedings{wang_et_al:LIPIcs.WABI.2019.19,
  author =	{Wang, Qi and Elworth, R. A. Leo and Liu, Tian Rui and Treangen, Todd J.},
  title =	{{Faster Pan-Genome Construction for Efficient Differentiation of Naturally Occurring and Engineered Plasmids with Plaster}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{19:1--19:12},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.19},
  URN =		{urn:nbn:de:0030-drops-110492},
  doi =		{10.4230/LIPIcs.WABI.2019.19},
  annote =	{Keywords: comparative genomics, sequence alignment, pan-genome, engineered plasmids}
}
@InProceedings{truszkowski_et_al:LIPIcs.WABI.2019.20,
  author =	{Truszkowski, Jakub and Gascuel, Olivier and Swenson, Krister M.},
  title =	{{Rapidly Computing the Phylogenetic Transfer Index}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{20:1--20:12},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.20},
  URN =		{urn:nbn:de:0030-drops-110505},
  doi =		{10.4230/LIPIcs.WABI.2019.20},
  annote =	{Keywords: large phylogenies, bootstrap analysis, tree comparison, data structures on trees}
}
@InProceedings{cao_et_al:LIPIcs.WABI.2019.21,
  author =	{Cao, Zhen and Zhu, Jiafan and Nakhleh, Luay},
  title =	{{Empirical Performance of Tree-Based Inference of Phylogenetic Networks}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{21:1--21:13},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.21},
  URN =		{urn:nbn:de:0030-drops-110510},
  doi =		{10.4230/LIPIcs.WABI.2019.21},
  annote =	{Keywords: Phylogenetic networks, species tree, tree-based networks, multi-locus phylogeny}
}
@InProceedings{edrisi_et_al:LIPIcs.WABI.2019.22,
  author =	{Edrisi, Mohammadamin and Zafar, Hamim and Nakhleh, Luay},
  title =	{{A Combinatorial Approach for Single-cell Variant Detection via Phylogenetic Inference}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{22:1--22:13},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.22},
  URN =		{urn:nbn:de:0030-drops-110525},
  doi =		{10.4230/LIPIcs.WABI.2019.22},
  annote =	{Keywords: Mutation calling, Single-cell sequencing, Integer linear programming, Perfect phylogeny}
}
@InProceedings{sauerwald_et_al:LIPIcs.WABI.2019.23,
  author =	{Sauerwald, Natalie and Shen, Yihang and Kingsford, Carl},
  title =	{{Topological Data Analysis Reveals Principles of Chromosome Structure in Cellular Differentiation}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{23:1--23:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.23},
  URN =		{urn:nbn:de:0030-drops-110537},
  doi =		{10.4230/LIPIcs.WABI.2019.23},
  annote =	{Keywords: topological data analysis, chromosome structure, Hi-C, topologically associating domains}
}
@InProceedings{polevikov_et_al:LIPIcs.WABI.2019.24,
  author =	{Polevikov, Evgeny and Kolmogorov, Mikhail},
  title =	{{Synteny Paths for Assembly Graphs Comparison}},
  booktitle =	{19th International Workshop on Algorithms in Bioinformatics (WABI 2019)},
  pages =	{24:1--24:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-123-8},
  ISSN =	{1868-8969},
  year =	{2019},
  volume =	{143},
  editor =	{Huber, Katharina T. and Gusfield, Dan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.24},
  URN =		{urn:nbn:de:0030-drops-110545},
  doi =		{10.4230/LIPIcs.WABI.2019.24},
  annote =	{Keywords: Assembly graphs, Genome assembly, Synteny blocks, Comparative Genomics}
}

The metadata provided by Dagstuhl Publishing on its webpages, as well as their export formats (such as XML or BibTeX) available at our website, is released under the CC0 1.0 Public Domain Dedication license. That is, you are free to copy, distribute, use, modify, transform, build upon, and produce derived works from our data, even for commercial purposes, all without asking permission. Of course, we are always happy if you provide a link to us as the source of the data.

Read the full CC0 1.0 legal code for the exact terms that apply: https://creativecommons.org/publicdomain/zero/1.0/legalcode

Questions / Remarks / Feedback
X

Feedback for Dagstuhl Publishing


Thanks for your feedback!

Feedback submitted

Could not send message

Please try again later or send an E-mail