Published in: LIPIcs, Volume 297, 51st International Colloquium on Automata, Languages, and Programming (ICALP 2024)
Itai Boneh, Shay Golan, Shay Mozes, and Oren Weimann. Õptimal Dynamic Time Warping on Run-Length Encoded Strings. In 51st International Colloquium on Automata, Languages, and Programming (ICALP 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 297, pp. 30:1-30:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)
@InProceedings{boneh_et_al:LIPIcs.ICALP.2024.30, author = {Boneh, Itai and Golan, Shay and Mozes, Shay and Weimann, Oren}, title = {{\~{O}ptimal Dynamic Time Warping on Run-Length Encoded Strings}}, booktitle = {51st International Colloquium on Automata, Languages, and Programming (ICALP 2024)}, pages = {30:1--30:17}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-322-5}, ISSN = {1868-8969}, year = {2024}, volume = {297}, editor = {Bringmann, Karl and Grohe, Martin and Puppis, Gabriele and Svensson, Ola}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2024.30}, URN = {urn:nbn:de:0030-drops-201730}, doi = {10.4230/LIPIcs.ICALP.2024.30}, annote = {Keywords: Dynamic time warping, Fr\'{e}chet distance, edit distance, run-length encoding} }
Published in: LIPIcs, Volume 201, 21st International Workshop on Algorithms in Bioinformatics (WABI 2021)
Travis Gagie, Garance Gourdel, and Giovanni Manzini. Compressing and Indexing Aligned Readsets. In 21st International Workshop on Algorithms in Bioinformatics (WABI 2021). Leibniz International Proceedings in Informatics (LIPIcs), Volume 201, pp. 13:1-13:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2021)
@InProceedings{gagie_et_al:LIPIcs.WABI.2021.13, author = {Gagie, Travis and Gourdel, Garance and Manzini, Giovanni}, title = {{Compressing and Indexing Aligned Readsets}}, booktitle = {21st International Workshop on Algorithms in Bioinformatics (WABI 2021)}, pages = {13:1--13:21}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-200-6}, ISSN = {1868-8969}, year = {2021}, volume = {201}, editor = {Carbone, Alessandra and El-Kebir, Mohammed}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2021.13}, URN = {urn:nbn:de:0030-drops-143660}, doi = {10.4230/LIPIcs.WABI.2021.13}, annote = {Keywords: data compression, compact data structures, FM-index, Burrows-Wheeler Transform, EBWT, XBWT, DNA reads} }
Published in: LIPIcs, Volume 143, 19th International Workshop on Algorithms in Bioinformatics (WABI 2019)
Jarno Alanko, Hideo Bannai, Bastien Cazaux, Pierre Peterlongo, and Jens Stoye. Finding All Maximal Perfect Haplotype Blocks in Linear Time. In 19th International Workshop on Algorithms in Bioinformatics (WABI 2019). Leibniz International Proceedings in Informatics (LIPIcs), Volume 143, pp. 8:1-8:9, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2019)
@InProceedings{alanko_et_al:LIPIcs.WABI.2019.8, author = {Alanko, Jarno and Bannai, Hideo and Cazaux, Bastien and Peterlongo, Pierre and Stoye, Jens}, title = {{Finding All Maximal Perfect Haplotype Blocks in Linear Time}}, booktitle = {19th International Workshop on Algorithms in Bioinformatics (WABI 2019)}, pages = {8:1--8:9}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-123-8}, ISSN = {1868-8969}, year = {2019}, volume = {143}, editor = {Huber, Katharina T. and Gusfield, Dan}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.8}, URN = {urn:nbn:de:0030-drops-110388}, doi = {10.4230/LIPIcs.WABI.2019.8}, annote = {Keywords: Population genomics, selection coefficient, haplotype block, positional Burrows-Wheeler Transform} }
Published in: LIPIcs, Volume 75, 16th International Symposium on Experimental Algorithms (SEA 2017)
Antoine Limasset, Guillaume Rizk, Rayan Chikhi, and Pierre Peterlongo. Fast and Scalable Minimal Perfect Hashing for Massive Key Sets. In 16th International Symposium on Experimental Algorithms (SEA 2017). Leibniz International Proceedings in Informatics (LIPIcs), Volume 75, pp. 25:1-25:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2017)
@InProceedings{limasset_et_al:LIPIcs.SEA.2017.25, author = {Limasset, Antoine and Rizk, Guillaume and Chikhi, Rayan and Peterlongo, Pierre}, title = {{Fast and Scalable Minimal Perfect Hashing for Massive Key Sets}}, booktitle = {16th International Symposium on Experimental Algorithms (SEA 2017)}, pages = {25:1--25:16}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-036-1}, ISSN = {1868-8969}, year = {2017}, volume = {75}, editor = {Iliopoulos, Costas S. and Pissis, Solon P. and Puglisi, Simon J. and Raman, Rajeev}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SEA.2017.25}, URN = {urn:nbn:de:0030-drops-76196}, doi = {10.4230/LIPIcs.SEA.2017.25}, annote = {Keywords: Minimal Perfect Hash Functions, Algorithms, Data Structures, Big Data} }