Published in: LIPIcs, Volume 242, 22nd International Workshop on Algorithms in Bioinformatics (WABI 2022)
Eden Ozery, Meirav Zehavi, and Michal Ziv-Ukelson. New Algorithms for Structure Informed Genome Rearrangement. In 22nd International Workshop on Algorithms in Bioinformatics (WABI 2022). Leibniz International Proceedings in Informatics (LIPIcs), Volume 242, pp. 11:1-11:19, Schloss Dagstuhl - Leibniz-Zentrum für Informatik (2022)
@InProceedings{ozery_et_al:LIPIcs.WABI.2022.11, author = {Ozery, Eden and Zehavi, Meirav and Ziv-Ukelson, Michal}, title = {{New Algorithms for Structure Informed Genome Rearrangement}}, booktitle = {22nd International Workshop on Algorithms in Bioinformatics (WABI 2022)}, pages = {11:1--11:19}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-243-3}, ISSN = {1868-8969}, year = {2022}, volume = {242}, editor = {Boucher, Christina and Rahmann, Sven}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2022.11}, URN = {urn:nbn:de:0030-drops-170454}, doi = {10.4230/LIPIcs.WABI.2022.11}, annote = {Keywords: PQ-tree, Gene Cluster, Breakpoint Distance} }
Published in: LIPIcs, Volume 172, 20th International Workshop on Algorithms in Bioinformatics (WABI 2020)
Galia R. Zimerman, Dina Svetlitsky, Meirav Zehavi, and Michal Ziv-Ukelson. Approximate Search for Known Gene Clusters in New Genomes Using PQ-Trees. In 20th International Workshop on Algorithms in Bioinformatics (WABI 2020). Leibniz International Proceedings in Informatics (LIPIcs), Volume 172, pp. 1:1-1:24, Schloss Dagstuhl - Leibniz-Zentrum für Informatik (2020)
@InProceedings{zimerman_et_al:LIPIcs.WABI.2020.1, author = {Zimerman, Galia R. and Svetlitsky, Dina and Zehavi, Meirav and Ziv-Ukelson, Michal}, title = {{Approximate Search for Known Gene Clusters in New Genomes Using PQ-Trees}}, booktitle = {20th International Workshop on Algorithms in Bioinformatics (WABI 2020)}, pages = {1:1--1:24}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-161-0}, ISSN = {1868-8969}, year = {2020}, volume = {172}, editor = {Kingsford, Carl and Pisanti, Nadia}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2020.1}, URN = {urn:nbn:de:0030-drops-127906}, doi = {10.4230/LIPIcs.WABI.2020.1}, annote = {Keywords: PQ-Tree, Gene Cluster, Efflux Pump} }
Published in: LIPIcs, Volume 143, 19th International Workshop on Algorithms in Bioinformatics (WABI 2019)
Roni Zoller, Meirav Zehavi, and Michal Ziv-Ukelson. A New Paradigm for Identifying Reconciliation-Scenario Altering Mutations Conferring Environmental Adaptation. In 19th International Workshop on Algorithms in Bioinformatics (WABI 2019). Leibniz International Proceedings in Informatics (LIPIcs), Volume 143, pp. 9:1-9:13, Schloss Dagstuhl - Leibniz-Zentrum für Informatik (2019)
@InProceedings{zoller_et_al:LIPIcs.WABI.2019.9, author = {Zoller, Roni and Zehavi, Meirav and Ziv-Ukelson, Michal}, title = {{A New Paradigm for Identifying Reconciliation-Scenario Altering Mutations Conferring Environmental Adaptation}}, booktitle = {19th International Workshop on Algorithms in Bioinformatics (WABI 2019)}, pages = {9:1--9:13}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-123-8}, ISSN = {1868-8969}, year = {2019}, volume = {143}, editor = {Huber, Katharina T. and Gusfield, Dan}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.WABI.2019.9}, URN = {urn:nbn:de:0030-drops-110398}, doi = {10.4230/LIPIcs.WABI.2019.9}, annote = {Keywords: Gene tree, Species tree, Reconciliation} }
Published in: LIPIcs, Volume 128, 30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)
Michal Ziv-Ukelson. Stringology Combats Microbiological Threats (Invited Talk). In 30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019). Leibniz International Proceedings in Informatics (LIPIcs), Volume 128, p. 3:1, Schloss Dagstuhl - Leibniz-Zentrum für Informatik (2019)
@InProceedings{zivukelson:LIPIcs.CPM.2019.3, author = {Ziv-Ukelson, Michal}, title = {{Stringology Combats Microbiological Threats}}, booktitle = {30th Annual Symposium on Combinatorial Pattern Matching (CPM 2019)}, pages = {3:1--3:1}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-103-0}, ISSN = {1868-8969}, year = {2019}, volume = {128}, editor = {Pisanti, Nadia and P. Pissis, Solon}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2019.3}, URN = {urn:nbn:de:0030-drops-104748}, doi = {10.4230/LIPIcs.CPM.2019.3}, annote = {Keywords: comparative genomics, syntenic blocks, gene clusters, reconciliation of gene and species trees} }
Published in: LIPIcs, Volume 54, 27th Annual Symposium on Combinatorial Pattern Matching (CPM 2016)
Amir Carmel, Dekel Tsur, and Michal Ziv-Ukelson. On Almost Monge All Scores Matrices. In 27th Annual Symposium on Combinatorial Pattern Matching (CPM 2016). Leibniz International Proceedings in Informatics (LIPIcs), Volume 54, pp. 17:1-17:12, Schloss Dagstuhl - Leibniz-Zentrum für Informatik (2016)
@InProceedings{carmel_et_al:LIPIcs.CPM.2016.17, author = {Carmel, Amir and Tsur, Dekel and Ziv-Ukelson, Michal}, title = {{On Almost Monge All Scores Matrices}}, booktitle = {27th Annual Symposium on Combinatorial Pattern Matching (CPM 2016)}, pages = {17:1--17:12}, series = {Leibniz International Proceedings in Informatics (LIPIcs)}, ISBN = {978-3-95977-012-5}, ISSN = {1868-8969}, year = {2016}, volume = {54}, editor = {Grossi, Roberto and Lewenstein, Moshe}, publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik}, address = {Dagstuhl, Germany}, URL = {https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2016.17}, URN = {urn:nbn:de:0030-drops-60770}, doi = {10.4230/LIPIcs.CPM.2016.17}, annote = {Keywords: Sequence alignment, longest common subsequences, DIST matrices, Monge matrices, all path score computations.} }
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