Worst-case-optimal Spaced Seeds

Rahmann, Sven; Zentgraf, Jens

doi:10.4230/artifacts.23732

Artifact

Worst-case-optimal Spaced Seeds Software

Authors Sven Rahmann , Jens Zentgraf

Part of: Collection: Supplementary Materials
License: MIT License
Publication Date: 2025-08-15

Document Identifiers

DOI: 10.4230/artifacts.23732
URN: urn:nbn:de:0030-drops-237327

Author Details

Sven Rahmann

Saarland University

Jens Zentgraf

Saarland University

Content

Software (Source Code): https://gitlab.com/rahmannlab/seed-optimization
archived version

Version/Status

Content created at: 2024-01-01
Status: Active (at the time of publication 2025-08-15)

Cite As Get BibTex

Sven Rahmann, Jens Zentgraf. Worst-case-optimal Spaced Seeds (Software, Source Code). Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025) https://doi.org/10.4230/artifacts.23732

Subject Classification

Keywords

spaced seeds
gapped k-mers
gapped q-grams

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