Collection

Supplementary Materials

Supplementary materials (e.g., Software, Datasets, ...) corresponding to research articles published by Dagstuhl Publishing

Artifact
Software
softlang/s2s

Authors: Philipp Seifer


Abstract

Cite as

Philipp Seifer. softlang/s2s (Software, Source Code). Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)


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@misc{DARUSV2,
   title = {{softlang/s2s}}, 
   author = {Seifer, Philipp},
   note = {Software, swhId: \href{https://archive.softwareheritage.org/swh:1:dir:a38354c2cab3efb8abdc9e80f611d19aa3531d82}{\texttt{swh:1:dir:a38354c2cab3efb8abdc9e80f611d19aa3531d82}} (visited on 2026-09-03)},
   url = {https://github.com/softlang/s2s},
   doi = {10.4230/artifacts.27685},
}
Artifact
Software
GeoRDFBench Framework

Authors: Theofilos Ioannidis


Abstract

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Theofilos Ioannidis. GeoRDFBench Framework (Software, GeoRDFBench Framework, code). Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)


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@misc{GeoRDFBench:github,
   title = {{GeoRDFBench Framework}}, 
   author = {Ioannidis, Theofilos},
   note = {Software, version 2.0.0., swhId: \href{https://archive.softwareheritage.org/swh:1:dir:972135253c56ac42c3face1b01ab2ad360acea96;origin=https://github.com/tioannid/geordfbench;visit=swh:1:snp:9c863d91d8a76fa2e170941e558245f19827b853;anchor=swh:1:rev:f3347a2f5e57c97ef5405f960cfe1b3f3311c0a1}{\texttt{swh:1:dir:972135253c56ac42c3face1b01ab2ad360acea96}} (visited on 2026-09-03)},
   url = {https://github.com/tioannid/geordfbench},
   doi = {10.4230/artifacts.27628},
}
Artifact
Service
GeoRDFBench Framework Web Site

Authors: Theofilos Ioannidis


Abstract

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Theofilos Ioannidis. GeoRDFBench Framework Web Site (Service, GeoRDFBench Framework, web site). Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)


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@misc{GeoRDFBench:website,
   title = {{GeoRDFBench Framework Web Site}}, 
   author = {Ioannidis, Theofilos},
   note = {Service, version 2.0.0. (visited on 2026-09-03)},
   url = {https://geordfbench.di.uoa.gr/},
   doi = {10.4230/artifacts.27629},
}
Artifact
Software
ProteinStructureAlignmentPlus

Authors: Masahito Tsukahara and Tetsuo Shibuya


Abstract

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@misc{dagpub-supp--paper-25847-urlgithub.com-masat03110-ProteinStructureAlignmentPlus,
   title = {{ProteinStructureAlignmentPlus}}, 
   author = {Tsukahara, Masahito and Shibuya, Tetsuo},
   note = {Software, swhId: \href{https://archive.softwareheritage.org/swh:1:dir:8bdeadc1f4304d35619d3600f97069c17bc38192;origin=https://github.com/masat03110/ProteinStructureAlignmentPlus;visit=swh:1:snp:e5593dc75afb7e4f46874b2029bc5dd473034cba;anchor=swh:1:rev:be8e66b12f8ec7f679bda152b9fd254c23f27bc9}{\texttt{swh:1:dir:8bdeadc1f4304d35619d3600f97069c17bc38192}} (visited on 2026-08-27)},
   url = {https://github.com/masat03110/ProteinStructureAlignmentPlus},
}
Artifact
Software
eaDCAstar

Authors: Samuel Gardelle


Abstract

Cite as

Samuel Gardelle. eaDCAstar (Software). Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)


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@misc{dagstuhl-artifact-27542,
   title = {{eaDCAstar}}, 
   author = {Gardelle, Samuel},
   note = {Software, version 1., swhId: \href{https://archive.softwareheritage.org/swh:1:dir:e53ad07a87e78c5d6e48b33986c10a1c937ed706;origin=https://codeberg.org/samuel-gardelle/wabi26-eaDCAstar;visit=swh:1:snp:3e5027d9c94738a73eac72bdaad9f28e3235c89e;anchor=swh:1:rev:4bddd5d31fe03875c78c8ce9c705abf9940eebcb}{\texttt{swh:1:dir:e53ad07a87e78c5d6e48b33986c10a1c937ed706}} (visited on 2026-08-27)},
   url = {https://codeberg.org/samuel-gardelle/wabi26-eaDCAstar},
   doi = {10.4230/artifacts.27542},
}
Artifact
Software
nrizzo/llchain

Authors: Nicola Rizzo and Ragnar Groot Koerkamp


Abstract

Cite as

Nicola Rizzo, Ragnar Groot Koerkamp. nrizzo/llchain (Software). Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)


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@misc{dagstuhl-artifact-27683,
   title = {{nrizzo/llchain}}, 
   author = {Rizzo, Nicola and Groot Koerkamp, Ragnar},
   note = {Software, EU Horizon Europe 101060011, swhId: \href{https://archive.softwareheritage.org/swh:1:dir:78de8057c7f61afc5518ef3b8a46a5ac91e21d52;origin=https://github.com/nrizzo/llchain;visit=swh:1:snp:0ea3e28442f7bc3c5f7db15d9b6314e87292c681;anchor=swh:1:rev:b0953ab025e078ab055a2ecf79221e119cad4922}{\texttt{swh:1:dir:78de8057c7f61afc5518ef3b8a46a5ac91e21d52}} (visited on 2026-08-27)},
   url = {https://github.com/nrizzo/llchain},
   doi = {10.4230/artifacts.27683},
}
Artifact
Software
Quik

Authors: Schüler Steffen, Riko Uphoff, and Antonia Schmidt


Abstract

Cite as

Schüler Steffen, Riko Uphoff, Antonia Schmidt. Quik (Software, Source Code). Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)


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@misc{dagstuhl-artifact-27619,
   title = {{Quik}}, 
   author = {Steffen, Sch\"{u}ler and Uphoff, Riko and Schmidt, Antonia},
   note = {Software, version 2.0., swhId: \href{https://archive.softwareheritage.org/swh:1:dir:948d8ae0e0b66260e91d201ea0b5f6f732aa4eff;origin=https://github.com/uni-halle/quik;visit=swh:1:snp:03c4a91d718b86373bc9905eb9b06a59d0ead772;anchor=swh:1:rev:d693f3bfa1b2693a3c512ed2a7eb05d5abfccf69}{\texttt{swh:1:dir:948d8ae0e0b66260e91d201ea0b5f6f732aa4eff}} (visited on 2026-08-27)},
   url = {https://github.com/uni-halle/quik},
   doi = {10.4230/artifacts.27619},
}
Artifact
Software
gi-bielefeld/spp_dcj_exact

Authors: Leonard Bohnenkämper and Daria Frolova


Abstract

Cite as

Leonard Bohnenkämper, Daria Frolova. gi-bielefeld/spp_dcj_exact (Software). Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)


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@misc{dagstuhl-artifact-27684,
   title = {{gi-bielefeld/spp\underlinedcj\underlineexact}}, 
   author = {Bohnenk\"{a}mper, Leonard and Frolova, Daria},
   note = {Software, swhId: \href{https://archive.softwareheritage.org/swh:1:dir:9d2d2213b28d627478afc8a5f365b31b0d0979f1;origin=https://github.com/gi-bielefeld/spp_dcj_exact;visit=swh:1:snp:eb4b695a9fdc496b5ee104612edfa998962f944d;anchor=swh:1:rev:cd5644d5c272a6c65c338b6bd211665e856ee1df}{\texttt{swh:1:dir:9d2d2213b28d627478afc8a5f365b31b0d0979f1}} (visited on 2026-08-27)},
   url = {https://github.com/gi-bielefeld/spp_dcj_exact},
   doi = {10.4230/artifacts.27684},
}
Artifact
Software
DivQuant

Authors: Johanna Elena Schmitz and Sven Rahmann


Abstract

Cite as

Johanna Elena Schmitz, Sven Rahmann. DivQuant (Software, Source Code). Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)


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@misc{dagstuhl-artifact-27620,
   title = {{DivQuant}}, 
   author = {Schmitz, Johanna Elena and Rahmann, Sven},
   note = {Software, version 0.1., swhId: \href{https://archive.softwareheritage.org/swh:1:dir:1ca96b0e0bbf05c5e7afa9dee8101fd46e1246b5;origin=https://gitlab.com/rahmannlab/divquant;visit=swh:1:snp:02bbab1fb6f82d9f58a60d98ca97d13a79773826;anchor=swh:1:rev:2baab79d828dca7d5dcffcbe2c333baf05a92d82}{\texttt{swh:1:dir:1ca96b0e0bbf05c5e7afa9dee8101fd46e1246b5}} (visited on 2026-08-27)},
   url = {https://gitlab.com/rahmannlab/divquant},
   doi = {10.4230/artifacts.27620},
}
Artifact
Software
DiscrimAlign

Authors: Michał Aleksander Ciach, Elissavet Zacharopoulou, Michał Piotr Startek, Błażej Miasojedow, and Panagiotis Alexiou


Abstract

Cite as

Michał Aleksander Ciach, Elissavet Zacharopoulou, Michał Piotr Startek, Błażej Miasojedow, Panagiotis Alexiou. DiscrimAlign (Software, Source Code). Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)


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@misc{dagstuhl-artifact-27630,
   title = {{DiscrimAlign}}, 
   author = {Ciach, Micha{\l} Aleksander and Zacharopoulou, Elissavet and Startek, Micha{\l} Piotr and Miasojedow, B{\l}a\.{z}ej and Alexiou, Panagiotis},
   note = {Software, version 1.0., swhId: \href{https://archive.softwareheritage.org/swh:1:dir:e70ee75187e06eb93adc1da6022502a80230d4b0;origin=https://github.com/BioGeMT/DiscrimAlign;visit=swh:1:snp:099e310c351ec557fd10ce0904c01902f0385dd5;anchor=swh:1:rev:2f69b6664e86039919793e651f89602063d5433d}{\texttt{swh:1:dir:e70ee75187e06eb93adc1da6022502a80230d4b0}} (visited on 2026-08-27)},
   url = {https://github.com/BioGeMT/DiscrimAlign},
   doi = {10.4230/artifacts.27630},
}
Artifact
Software
LoreDepuydt/sbwt-set-operations

Authors: Jarno N. Alanko, Lore Depuydt, Camille Marchet, and Simon J. Puglisi


Abstract

Cite as

Jarno N. Alanko, Lore Depuydt, Camille Marchet, Simon J. Puglisi. LoreDepuydt/sbwt-set-operations (Software). Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)


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@misc{dagstuhl-artifact-27674,
   title = {{LoreDepuydt/sbwt-set-operations}}, 
   author = {Alanko, Jarno N. and Depuydt, Lore and Marchet, Camille and Puglisi, Simon J.},
   note = {Software, swhId: \href{https://archive.softwareheritage.org/swh:1:dir:de3c949dbd910f97f6af25f8be4838be2fbe4dfb;origin=https://github.com/LoreDepuydt/sbwt-set-operations;visit=swh:1:snp:eceff5e98e31e77ceeede627ef8a88598b05a4fd;anchor=swh:1:rev:0a3c2d30767c7cf91900393445e9bc658194f696}{\texttt{swh:1:dir:de3c949dbd910f97f6af25f8be4838be2fbe4dfb}} (visited on 2026-08-27)},
   url = {https://github.com/LoreDepuydt/sbwt-set-operations},
   doi = {10.4230/artifacts.27674},
}
Artifact
Software
Spaced Seed Optimization

Authors: Moein Karami, Jens Zentgraf, and Sven Rahmann


Abstract

Cite as

Moein Karami, Jens Zentgraf, Sven Rahmann. Spaced Seed Optimization (Software, Source code). Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)


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@misc{dagstuhl-artifact-27677,
   title = {{Spaced Seed Optimization}}, 
   author = {Karami, Moein and Zentgraf, Jens and Rahmann, Sven},
   note = {Software, version 0.11., swhId: \href{https://archive.softwareheritage.org/swh:1:dir:050c8caccda68021f2feb9b7b8400444e9888340;origin=https://gitlab.com/rahmannlab/seed-optimization;visit=swh:1:snp:ed60ba2d5efcd8199c1bf281817a561772cb5d47;anchor=swh:1:rev:61d973045b71d7ec0c3bc2ef40bd7db39f485748}{\texttt{swh:1:dir:050c8caccda68021f2feb9b7b8400444e9888340}} (visited on 2026-08-27)},
   url = {https://gitlab.com/rahmannlab/seed-optimization/},
   doi = {10.4230/artifacts.27677},
}
Artifact
Software
RagnarGrootKoerkamp/minimizers

Authors: Ragnar Groot Koerkamp


Abstract

Cite as

Ragnar Groot Koerkamp. RagnarGrootKoerkamp/minimizers (Software, Source Code). Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)


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@misc{dagstuhl-artifact-27679,
   title = {{RagnarGrootKoerkamp/minimizers}}, 
   author = {Groot Koerkamp, Ragnar},
   note = {Software, swhId: \href{https://archive.softwareheritage.org/swh:1:dir:6b775d1315385c94ecbd6058cfbba2476fbeb0b4;origin=https://github.com/RagnarGrootKoerkamp/minimizers;visit=swh:1:snp:d0de14555d7455fd9cd1dc435feb0a29a559918c;anchor=swh:1:rev:61517a33b5f6b6eac7d7fd2d2ac39b1c27d28692}{\texttt{swh:1:dir:6b775d1315385c94ecbd6058cfbba2476fbeb0b4}} (visited on 2026-08-27)},
   url = {https://github.com/RagnarGrootKoerkamp/minimizers},
   doi = {10.4230/artifacts.27679},
}
Artifact
Software
shahcompbio/phylo_inconsistency

Authors: Gryte Satas, Matthew A. Myers, and Sohrab P. Shah


Abstract

Cite as

Gryte Satas, Matthew A. Myers, Sohrab P. Shah. shahcompbio/phylo_inconsistency (Software). Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)


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@misc{dagstuhl-artifact-27634,
   title = {{shahcompbio/phylo\underlineinconsistency}}, 
   author = {Satas, Gryte and Myers, Matthew A. and Shah, Sohrab P.},
   note = {Software, swhId: \href{https://archive.softwareheritage.org/swh:1:dir:4b04560c2d51f196ba4119f87d0f4f858d3783e6;origin=https://github.com/shahcompbio/phylo_inconsistency;visit=swh:1:snp:9fa09458cc41a1d4d473344ffa8b7b10ecc994a4;anchor=swh:1:rev:03f38e311325415f2edef3b347551c1b7639a5e8}{\texttt{swh:1:dir:4b04560c2d51f196ba4119f87d0f4f858d3783e6}} (visited on 2026-08-27)},
   url = {https://github.com/shahcompbio/phylo_inconsistency},
   doi = {10.4230/artifacts.27634},
}
Artifact
Software
Singh-Lab/FBApro

Authors: Ariel Bruner and Mona Singh


Abstract

Cite as

Ariel Bruner, Mona Singh. Singh-Lab/FBApro (Software, Source Code). Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)


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@misc{dagstuhl-artifact-27640,
   title = {{Singh-Lab/FBApro}}, 
   author = {Bruner, Ariel and Singh, Mona},
   note = {Software, swhId: \href{https://archive.softwareheritage.org/swh:1:dir:56f800231d0dae5268df2adbab6fd5599d0a376f;origin=https://github.com/Singh-Lab/FBApro;visit=swh:1:snp:6a6af8056f089d37136c49d4b7ed3a5bb8f4d1e0;anchor=swh:1:rev:ce7cab975f68796659f9e52581320d5cb3093a2d}{\texttt{swh:1:dir:56f800231d0dae5268df2adbab6fd5599d0a376f}} (visited on 2026-08-27)},
   url = {https://github.com/Singh-Lab/FBApro},
   doi = {10.4230/artifacts.27640},
}
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