2 Search Results for "Bernt, Matthias"

Document
RANDOM
DOI: 10.4230/LIPIcs.APPROX/RANDOM.2025.30
Algorithmic Contiguity from Low-Degree Conjecture and Applications in Correlated Random Graphs

Authors: Zhangsong Li

Published in: LIPIcs, Volume 353, Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2025)

Abstract
In this paper, assuming a natural strengthening of the low-degree conjecture, we provide evidence of computational hardness for two problems: (1) the (partial) matching recovery problem in the sparse correlated Erdős-Rényi graphs G(n,q;ρ) when the edge-density q = n^{-1+o(1)} and the correlation ρ < √{α} lies below the Otter’s threshold, this resolves a remaining problem in [Jian Ding et al., 2023]; (2) the detection problem between a pair of correlated sparse stochastic block model S(n,λ/n;k,ε;s) and a pair of independent stochastic block models S(n,λs/n;k,ε) when ε² λ s < 1 lies below the Kesten-Stigum (KS) threshold and s < √α lies below the Otter’s threshold, this resolves a remaining problem in [Guanyi Chen et al., 2024]. One of the main ingredient in our proof is to derive certain forms of algorithmic contiguity between two probability measures based on bounds on their low-degree advantage. To be more precise, consider the high-dimensional hypothesis testing problem between two probability measures ℙ and ℚ based on the sample Y. We show that if the low-degree advantage Adv_{≤D}(dℙ/dℚ) = O(1), then (assuming the low-degree conjecture) there is no efficient algorithm A such that ℚ(A(Y) = 0) = 1-o(1) and ℙ(A(Y) = 1) = Ω(1). This framework provides a useful tool for performing reductions between different inference tasks.
Cite as

Zhangsong Li. Algorithmic Contiguity from Low-Degree Conjecture and Applications in Correlated Random Graphs. In Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 353, pp. 30:1-30:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{li:LIPIcs.APPROX/RANDOM.2025.30,
  author =	{Li, Zhangsong},
  title =	{{Algorithmic Contiguity from Low-Degree Conjecture and Applications in Correlated Random Graphs}},
  booktitle =	{Approximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques (APPROX/RANDOM 2025)},
  pages =	{30:1--30:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-397-3},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{353},
  editor =	{Ene, Alina and Chattopadhyay, Eshan},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.APPROX/RANDOM.2025.30},
  URN =		{urn:nbn:de:0030-drops-243965},
  doi =		{10.4230/LIPIcs.APPROX/RANDOM.2025.30},
  annote =	{Keywords: Algorithmic Contiguity, Low-degree Conjecture, Correlated Random Graphs}
}
Document
DOI: 10.4230/OASIcs.GCB.2013.14
On Weighting Schemes for Gene Order Analysis

Authors: Matthias Bernt, Nicolas Wieseke, and Martin Middendorf

Published in: OASIcs, Volume 34, German Conference on Bioinformatics 2013

Abstract
Gene order analysis aims at extracting phylogenetic information from the comparison of the order and orientation of the genes on the genomes of different species. This can be achieved by computing parsimonious rearrangement scenarios, i.e. to determine a sequence of rearrangements events that transforms one given gene order into another such that the sum of weights of the included rearrangement events is minimal. In this sequence only certain types of rearrangements, given by the rearrangement model, are admissible and weights are assigned with respect to the rearrangement type. The choice of a suitable rearrangement model and corresponding weights for the included rearrangement types is important for the meaningful reconstruction. So far the analysis of weighting schemes for gene order analysis has not been considered sufficiently. In this paper weighting schemes for gene order analysis are considered for two rearrangement models: 1) inversions, transpositions, and inverse transpositions; 2) inversions, block interchanges, and inverse transpositions. For both rearrangement models we determined properties of the weighting functions that exclude certain types of rearrangements from parsimonious rearrangement scenarios.
Cite as

Matthias Bernt, Nicolas Wieseke, and Martin Middendorf. On Weighting Schemes for Gene Order Analysis. In German Conference on Bioinformatics 2013. Open Access Series in Informatics (OASIcs), Volume 34, pp. 14-23, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2013)

Copy BibTex To Clipboard

@InProceedings{bernt_et_al:OASIcs.GCB.2013.14,
  author =	{Bernt, Matthias and Wieseke, Nicolas and Middendorf, Martin},
  title =	{{On Weighting Schemes for Gene Order Analysis}},
  booktitle =	{German Conference on Bioinformatics 2013},
  pages =	{14--23},
  series =	{Open Access Series in Informatics (OASIcs)},
  ISBN =	{978-3-939897-59-0},
  ISSN =	{2190-6807},
  year =	{2013},
  volume =	{34},
  editor =	{Bei{\ss}barth, Tim and Kollmar, Martin and Leha, Andreas and Morgenstern, Burkhard and Schultz, Anne-Kathrin and Waack, Stephan and Wingender, Edgar},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/OASIcs.GCB.2013.14},
  URN =		{urn:nbn:de:0030-drops-42354},
  doi =		{10.4230/OASIcs.GCB.2013.14},
  annote =	{Keywords: Gene order analysis, maximum parsimony, weighting}
}
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