LIPIcs.STACS.2010.2460.pdf
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The problem of {\sc Subgraph Isomorphism} is defined as follows: Given a \emph{pattern} $H$ and a \emph{host graph} $G$ on $n$ vertices, does $G$ contain a subgraph that is isomorphic to $H$? Eppstein [SODA 95, J'GAA 99] gives the first linear time algorithm for subgraph isomorphism for a fixed-size pattern, say of order $k$, and arbitrary planar host graph, improving upon the $O(n^{\sqrt{k}})$-time algorithm when using the ``Color-coding'' technique of Alon et al [J'ACM 95]. Eppstein's algorithm runs in time $k^{O(k)} n$, that is, the dependency on $k$ is superexponential. We improve the running time to $2^{O(k)} n$, that is, single exponential in $k$ while keeping the term in $n$ linear. Next to deciding subgraph isomorphism, we can construct a solution and count all solutions in the same asymptotic running time. We may enumerate $\omega$ subgraphs with an additive term $O(\omega k)$ in the running time of our algorithm. We introduce the technique of ``embedded dynamic programming'' on a suitably structured graph decomposition, which exploits the number and topology of the underlying drawings of the subgraph pattern (rather than of the host graph).
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