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DOI: 10.4230/LIPIcs.CPM.2021.23
URN: urn:nbn:de:0030-drops-139746
URL: https://drops.dagstuhl.de/opus/volltexte/2021/13974/
Popa, Andrei ; Popa, Alexandru
Efficient Algorithms for Counting Gapped Palindromes
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Abstract
A gapped palindrome is a string uvu^{R}, where u^{R} represents the reverse of string u. In this paper we show three efficient algorithms for counting the occurrences of gapped palindromes in a given string S of length N. First, we present a solution in O(N) time for counting all gapped palindromes without additional constraints. Then, in the case where the length of v is constrained to be in an interval [g, G], we show an algorithm with running time O(N log N). Finally, we show an algorithm in O(N log² N) time for a more general case where we count gapped palindromes uvu^{R}, where u^{R} starts at position i with g(i) ≤ v ≤ G(i), for all positions i.
BibTeX - Entry
@InProceedings{popa_et_al:LIPIcs.CPM.2021.23,
author = {Popa, Andrei and Popa, Alexandru},
title = {{Efficient Algorithms for Counting Gapped Palindromes}},
booktitle = {32nd Annual Symposium on Combinatorial Pattern Matching (CPM 2021)},
pages = {23:1--23:13},
series = {Leibniz International Proceedings in Informatics (LIPIcs)},
ISBN = {978-3-95977-186-3},
ISSN = {1868-8969},
year = {2021},
volume = {191},
editor = {Gawrychowski, Pawe{\l} and Starikovskaya, Tatiana},
publisher = {Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
address = {Dagstuhl, Germany},
URL = {https://drops.dagstuhl.de/opus/volltexte/2021/13974},
URN = {urn:nbn:de:0030-drops-139746},
doi = {10.4230/LIPIcs.CPM.2021.23},
annote = {Keywords: pattern matching, gapped palindromes, suffix tree}
}
| Keywords: | pattern matching, gapped palindromes, suffix tree | |
| Seminar: | 32nd Annual Symposium on Combinatorial Pattern Matching (CPM 2021) | |
| Issue date: | 2021 | |
| Date of publication: | 30.06.2021 |
