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DOI: 10.4230/LIPIcs.AofA.2022.5

Enumeration of d-Combining Tree-Child Networks

Authors: Yu-Sheng Chang, Michael Fuchs, Hexuan Liu, Michael Wallner, and Guan-Ru Yu

Published in: LIPIcs, Volume 225, 33rd International Conference on Probabilistic, Combinatorial and Asymptotic Methods for the Analysis of Algorithms (AofA 2022)

Abstract

Tree-child networks are one of the most prominent network classes for modeling evolutionary processes which contain reticulation events. Several recent studies have addressed counting questions for bicombining tree-child networks which are tree-child networks with every reticulation node having exactly two parents. In this paper, we extend these studies to d-combining tree-child networks where every reticulation node has now d ≥ 2 parents. Moreover, we also give results and conjectures on the distributional behavior of the number of reticulation nodes of a network which is drawn uniformly at random from the set of all tree-child networks with the same number of leaves.

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Yu-Sheng Chang, Michael Fuchs, Hexuan Liu, Michael Wallner, and Guan-Ru Yu. Enumeration of d-Combining Tree-Child Networks. In 33rd International Conference on Probabilistic, Combinatorial and Asymptotic Methods for the Analysis of Algorithms (AofA 2022). Leibniz International Proceedings in Informatics (LIPIcs), Volume 225, pp. 5:1-5:13, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2022)

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@InProceedings{chang_et_al:LIPIcs.AofA.2022.5,
  author =	{Chang, Yu-Sheng and Fuchs, Michael and Liu, Hexuan and Wallner, Michael and Yu, Guan-Ru},
  title =	{{Enumeration of d-Combining Tree-Child Networks}},
  booktitle =	{33rd International Conference on Probabilistic, Combinatorial and Asymptotic Methods for the Analysis of Algorithms (AofA 2022)},
  pages =	{5:1--5:13},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-230-3},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{225},
  editor =	{Ward, Mark Daniel},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.AofA.2022.5},
  URN =		{urn:nbn:de:0030-drops-160914},
  doi =		{10.4230/LIPIcs.AofA.2022.5},
  annote =	{Keywords: Phylogenetic network, tree-child network, d-combining tree-child network, exact enumeration, asymptotic enumeration, reticulation node, limit law, stretched exponential}
}

@InProceedings{chang_et_al:LIPIcs.AofA.2022.5,
  author =	{Chang, Yu-Sheng and Fuchs, Michael and Liu, Hexuan and Wallner, Michael and Yu, Guan-Ru},
  title =	{{Enumeration of d-Combining Tree-Child Networks}},
  booktitle =	{33rd International Conference on Probabilistic, Combinatorial and Asymptotic Methods for the Analysis of Algorithms (AofA 2022)},
  pages =	{5:1--5:13},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-230-3},
  ISSN =	{1868-8969},
  year =	{2022},
  volume =	{225},
  editor =	{Ward, Mark Daniel},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.AofA.2022.5},
  URN =		{urn:nbn:de:0030-drops-160914},
  doi =		{10.4230/LIPIcs.AofA.2022.5},
  annote =	{Keywords: Phylogenetic network, tree-child network, d-combining tree-child network, exact enumeration, asymptotic enumeration, reticulation node, limit law, stretched exponential}
}

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Enumeration of d-Combining Tree-Child Networks

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