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DOI: 10.4230/LIPIcs.ICLP.2012.359

ASP at Work: An ASP Implementation of PhyloWS

Authors: Tiep Le, Hieu Nguyen, Enrico Pontelli, and Tran Cao Son

Published in: LIPIcs, Volume 17, Technical Communications of the 28th International Conference on Logic Programming (ICLP'12) (2012)

Abstract

This paper continues the exploration started in [Bininda-Emonds,2004], aimed at demonstrating the use of logic programming technology to support a large scale deployment and analysis of phylogenetic data from biological studies. This application paper illustrates the use of ASP technology in implementing the PhyloWS web service API — a recently proposed and community-agreed standard API to enable uniform access and inter-operation among phylogenetic applications and repositories. To date, only very incomplete implementations of PhyloWS have been realized; this paper demonstrates how ASP provides an ideal technology to support a more comprehensive realization of PhyloWS on a repository of semantically-described phylogenetic studies. The paper also presents a challenge for the developers of ASP-solvers.

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Tiep Le, Hieu Nguyen, Enrico Pontelli, and Tran Cao Son. ASP at Work: An ASP Implementation of PhyloWS. In Technical Communications of the 28th International Conference on Logic Programming (ICLP'12). Leibniz International Proceedings in Informatics (LIPIcs), Volume 17, pp. 359-369, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2012)

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@InProceedings{le_et_al:LIPIcs.ICLP.2012.359,
  author =	{Le, Tiep and Nguyen, Hieu and Pontelli, Enrico and Cao Son, Tran},
  title =	{{ASP at Work: An ASP Implementation of PhyloWS}},
  booktitle =	{Technical Communications of the 28th International Conference on Logic Programming (ICLP'12)},
  pages =	{359--369},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-939897-43-9},
  ISSN =	{1868-8969},
  year =	{2012},
  volume =	{17},
  editor =	{Dovier, Agostino and Santos Costa, V{\'\i}tor},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICLP.2012.359},
  URN =		{urn:nbn:de:0030-drops-36369},
  doi =		{10.4230/LIPIcs.ICLP.2012.359},
  annote =	{Keywords: Answer sets, phylogenetic inference, systems, applications}
}

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ASP at Work: An ASP Implementation of PhyloWS

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