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DOI: 10.4230/artifacts.26130
D-GRIL: End-to-End Topological Learning with 2-parameter Persistence

Authors: Soham Mukherjee, Shreyas N. Samaga, Cheng Xin, Steve Oudot, and Tamal K. Dey

Abstract
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@misc{dagpub-supp--paper-24468-url-github.com-TDA-Jyamiti-d-gril,
   title = {{D-GRIL: End-to-End Topological Learning with 2-parameter Persistence}}, 
   author = {Mukherjee, Soham and Samaga, Shreyas N. and Xin, Cheng and Oudot, Steve and Dey, Tamal K.},
   note = {Software, swhId: \href{https://archive.softwareheritage.org/swh:1:dir:379b8266de5d11b54b8041b9a4af9b9dde1fa254;origin=https://github.com/TDA-Jyamiti/d-gril;visit=swh:1:snp:258c458a4305a717ca6956a7438350e1cda5b1f5;anchor=swh:1:rev:c5039986410fa9e715dd86c20b12834275b7b810}{\texttt{swh:1:dir:379b8266de5d11b54b8041b9a4af9b9dde1fa254}} (visited on 2026-05-27)},
   url = {https://github.com/TDA-Jyamiti/d-gril/},
}
Document
DOI: 10.4230/LIPIcs.SoCG.2026.39
Locality Sensitive Hashing in Hyperbolic Space

Authors: Chengyuan Deng, Jie Gao, Kevin Lu, Feng Luo, and Cheng Xin

Published in: LIPIcs, Volume 367, 42nd International Symposium on Computational Geometry (SoCG 2026)

Abstract
For a metric space (X, d), a family ℋ of locality sensitive hash functions is called (r, cr, p₁, p₂) sensitive if a randomly chosen function h ∈ ℋ has probability at least p₁ (at most p₂) to map any a, b ∈ X in the same hash bucket if d(a, b) ≤ r (or d(a, b) ≥ cr). Locality Sensitive Hashing (LSH) is one of the most popular techniques for approximate nearest-neighbor search in high-dimensional spaces, and has been studied extensively for Hamming, Euclidean, and spherical geometries. An (r, cr, p₁, p₂)-sensitive hash function enables approximate nearest neighbor search (i.e., returning a point within distance cr from a query q if there exists a point within distance r from q) with space O(n^{1+ρ}) and query time O(n^ρ) where ρ = (log 1/p₁)/(log 1/p₂). But LSH for hyperbolic spaces ℍ^d remains largely unexplored. In this work, we present the first LSH construction native to hyperbolic space. For the hyperbolic plane (d = 2), we show a construction achieving ρ ≤ 1/c, based on the hyperplane rounding scheme. For general hyperbolic spaces (d ≥ 3), we use dimension reduction from ℍ^d to ℍ² and the 2D hyperbolic LSH to get ρ ≤ 1.59/c. On the lower bound side, we show that the lower bound on ρ of Euclidean LSH extends to the hyperbolic setting via local isometry, therefore giving ρ ≥ 1/c².
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Chengyuan Deng, Jie Gao, Kevin Lu, Feng Luo, and Cheng Xin. Locality Sensitive Hashing in Hyperbolic Space. In 42nd International Symposium on Computational Geometry (SoCG 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 367, pp. 39:1-39:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{deng_et_al:LIPIcs.SoCG.2026.39,
  author =	{Deng, Chengyuan and Gao, Jie and Lu, Kevin and Luo, Feng and Xin, Cheng},
  title =	{{Locality Sensitive Hashing in Hyperbolic Space}},
  booktitle =	{42nd International Symposium on Computational Geometry (SoCG 2026)},
  pages =	{39:1--39:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-418-5},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{367},
  editor =	{Ahn, Hee-Kap and Hoffmann, Michael and Nayyeri, Amir},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2026.39},
  URN =		{urn:nbn:de:0030-drops-258454},
  doi =		{10.4230/LIPIcs.SoCG.2026.39},
  annote =	{Keywords: Locality Sensitive Hashing, Hyperbolic Geometry, Dimension Reduction, Approximate Nearest Neighbor Search}
}
Document
DOI: 10.4230/LIPIcs.SoCG.2026.79
D-GRIL: End-To-End Topological Learning with 2-Parameter Persistence

Authors: Soham Mukherjee, Shreyas N. Samaga, Cheng Xin, Steve Oudot, and Tamal K. Dey

Published in: LIPIcs, Volume 367, 42nd International Symposium on Computational Geometry (SoCG 2026)

Abstract
End-to-end topological learning using 1-parameter persistence is well-known. We show that the framework can be enhanced using 2-parameter persistence by adopting a recently introduced 2-parameter persistence based vectorization technique called Gril. We establish a theory for gradient descent on Gril producing D-Gril. We show that D-Gril can be used to learn a bifiltration function on benchmark graph datasets. Further, we exhibit that this framework can be applied in the context of bio-activity prediction in drug discovery.
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Soham Mukherjee, Shreyas N. Samaga, Cheng Xin, Steve Oudot, and Tamal K. Dey. D-GRIL: End-To-End Topological Learning with 2-Parameter Persistence. In 42nd International Symposium on Computational Geometry (SoCG 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 367, pp. 79:1-79:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{mukherjee_et_al:LIPIcs.SoCG.2026.79,
  author =	{Mukherjee, Soham and Samaga, Shreyas N. and Xin, Cheng and Oudot, Steve and Dey, Tamal K.},
  title =	{{D-GRIL: End-To-End Topological Learning with 2-Parameter Persistence}},
  booktitle =	{42nd International Symposium on Computational Geometry (SoCG 2026)},
  pages =	{79:1--79:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-418-5},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{367},
  editor =	{Ahn, Hee-Kap and Hoffmann, Michael and Nayyeri, Amir},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2026.79},
  URN =		{urn:nbn:de:0030-drops-258865},
  doi =		{10.4230/LIPIcs.SoCG.2026.79},
  annote =	{Keywords: Topological Data Analysis, Persistent Homology, Multiparameter Persistence, Graph Learning, Graph Neural Networks}
}
Document
DOI: 10.4230/LIPIcs.SoCG.2018.32
Computing Bottleneck Distance for 2-D Interval Decomposable Modules

Authors: Tamal K. Dey and Cheng Xin

Published in: LIPIcs, Volume 99, 34th International Symposium on Computational Geometry (SoCG 2018)

Abstract
Computation of the interleaving distance between persistence modules is a central task in topological data analysis. For 1-D persistence modules, thanks to the isometry theorem, this can be done by computing the bottleneck distance with known efficient algorithms. The question is open for most n-D persistence modules, n>1, because of the well recognized complications of the indecomposables. Here, we consider a reasonably complicated class called 2-D interval decomposable modules whose indecomposables may have a description of non-constant complexity. We present a polynomial time algorithm to compute the bottleneck distance for these modules from indecomposables, which bounds the interleaving distance from above, and give another algorithm to compute a new distance called dimension distance that bounds it from below.
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Tamal K. Dey and Cheng Xin. Computing Bottleneck Distance for 2-D Interval Decomposable Modules. In 34th International Symposium on Computational Geometry (SoCG 2018). Leibniz International Proceedings in Informatics (LIPIcs), Volume 99, pp. 32:1-32:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2018)

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@InProceedings{dey_et_al:LIPIcs.SoCG.2018.32,
  author =	{Dey, Tamal K. and Xin, Cheng},
  title =	{{Computing Bottleneck Distance for 2-D Interval Decomposable Modules}},
  booktitle =	{34th International Symposium on Computational Geometry (SoCG 2018)},
  pages =	{32:1--32:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-066-8},
  ISSN =	{1868-8969},
  year =	{2018},
  volume =	{99},
  editor =	{Speckmann, Bettina and T\'{o}th, Csaba D.},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SoCG.2018.32},
  URN =		{urn:nbn:de:0030-drops-87453},
  doi =		{10.4230/LIPIcs.SoCG.2018.32},
  annote =	{Keywords: Persistence modules, bottleneck distance, interleaving distance}
}
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