3 Search Results for "Ferizovic, Daniel"

Document

DOI: 10.4230/LIPIcs.SEA.2024.1

Move-r: Optimizing the r-index

Authors: Nico Bertram, Johannes Fischer, and Lukas Nalbach

Published in: LIPIcs, Volume 301, 22nd International Symposium on Experimental Algorithms (SEA 2024)

Abstract

We present a static text index called Move-r, which is a highly optimized version of the r-index ([Travis Gagie et al., 2020] Gagie et al., 2020) that encorporates recent theoretical developments of the move data structure ([Takaaki Nishimoto and Yasuo Tabei, 2021] Nishimoto and Tabei, 2021). The r-index is the method of choice for indexing highly repetitive texts, such as different versions of a text document or DNA from the same species, as it exploits the compressibilty of the underlying data. With Move-r, we can answer count- and locate queries 2-35 (typically 15) times as fast as with any other r-index supporting locate queries while being 0.8-2.5 (typically 2) times as large. A Move-r index can be constructed 0.9-2 (typically 2) times as fast while using 1/3-1 (typically 1/2) times as much space.

Cite as

Nico Bertram, Johannes Fischer, and Lukas Nalbach. Move-r: Optimizing the r-index. In 22nd International Symposium on Experimental Algorithms (SEA 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 301, pp. 1:1-1:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{bertram_et_al:LIPIcs.SEA.2024.1,
  author =	{Bertram, Nico and Fischer, Johannes and Nalbach, Lukas},
  title =	{{Move-r: Optimizing the r-index}},
  booktitle =	{22nd International Symposium on Experimental Algorithms (SEA 2024)},
  pages =	{1:1--1:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-325-6},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{301},
  editor =	{Liberti, Leo},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SEA.2024.1},
  URN =		{urn:nbn:de:0030-drops-203662},
  doi =		{10.4230/LIPIcs.SEA.2024.1},
  annote =	{Keywords: Compressed Text Index, Burrows-Wheeler Transform}
}

Document

DOI: 10.4230/LIPIcs.SEA.2024.4

Separator Based Data Reduction for the Maximum Cut Problem

Authors: Jonas Charfreitag, Christine Dahn, Michael Kaibel, Philip Mayer, Petra Mutzel, and Lukas Schürmann

Published in: LIPIcs, Volume 301, 22nd International Symposium on Experimental Algorithms (SEA 2024)

Abstract

Preprocessing is an important ingredient for solving the maximum cut problem to optimality on real-world graphs. In our work, we derive a new framework for data reduction rules based on vertex separators. Vertex separators are sets of vertices, whose removal increases the number of connected components of a graph. Certain small separators can be found in linear time, allowing for an efficient combination of our framework with existing data reduction rules. Additionally, we complement known data reduction rules for triangles with a new one. In our computational experiments on established benchmark instances, we clearly show the effectiveness and efficiency of our proposed data reduction techniques. The resulting graphs are significantly smaller than in earlier studies and sometimes no vertex is left, so preprocessing has fully solved the instance to optimality. The introduced techniques are also shown to offer significant speedup potential for an exact state-of-the-art solver and to help a state-of-the-art heuristic to produce solutions of higher quality.

Cite as

Jonas Charfreitag, Christine Dahn, Michael Kaibel, Philip Mayer, Petra Mutzel, and Lukas Schürmann. Separator Based Data Reduction for the Maximum Cut Problem. In 22nd International Symposium on Experimental Algorithms (SEA 2024). Leibniz International Proceedings in Informatics (LIPIcs), Volume 301, pp. 4:1-4:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2024)

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@InProceedings{charfreitag_et_al:LIPIcs.SEA.2024.4,
  author =	{Charfreitag, Jonas and Dahn, Christine and Kaibel, Michael and Mayer, Philip and Mutzel, Petra and Sch\"{u}rmann, Lukas},
  title =	{{Separator Based Data Reduction for the Maximum Cut Problem}},
  booktitle =	{22nd International Symposium on Experimental Algorithms (SEA 2024)},
  pages =	{4:1--4:21},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-325-6},
  ISSN =	{1868-8969},
  year =	{2024},
  volume =	{301},
  editor =	{Liberti, Leo},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.SEA.2024.4},
  URN =		{urn:nbn:de:0030-drops-203698},
  doi =		{10.4230/LIPIcs.SEA.2024.4},
  annote =	{Keywords: Data Reduction, Maximum Cut, Vertex Separators}
}

Document

DOI: 10.4230/LIPIcs.ESA.2017.9

In-Place Parallel Super Scalar Samplesort (IPSSSSo)

Authors: Michael Axtmann, Sascha Witt, Daniel Ferizovic, and Peter Sanders

Published in: LIPIcs, Volume 87, 25th Annual European Symposium on Algorithms (ESA 2017)

Abstract

We present a sorting algorithm that works in-place, executes in parallel, is cache-efficient, avoids branch-mispredictions, and performs work O(n log n) for arbitrary inputs with high probability. The main algorithmic contributions are new ways to make distribution-based algorithms in-place: On the practical side, by using coarse-grained block-based permutations, and on the theoretical side, we show how to eliminate the recursion stack. Extensive experiments shw that our algorithm IPSSSSo scales well on a variety of multi-core machines. We outperform our closest in-place competitor by a factor of up to 3. Even as a sequential algorithm, we are up to 1.5 times faster than the closest sequential competitor, BlockQuicksort.

Cite as

Michael Axtmann, Sascha Witt, Daniel Ferizovic, and Peter Sanders. In-Place Parallel Super Scalar Samplesort (IPSSSSo). In 25th Annual European Symposium on Algorithms (ESA 2017). Leibniz International Proceedings in Informatics (LIPIcs), Volume 87, pp. 9:1-9:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2017)

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@InProceedings{axtmann_et_al:LIPIcs.ESA.2017.9,
  author =	{Axtmann, Michael and Witt, Sascha and Ferizovic, Daniel and Sanders, Peter},
  title =	{{In-Place Parallel Super Scalar Samplesort (IPSSSSo)}},
  booktitle =	{25th Annual European Symposium on Algorithms (ESA 2017)},
  pages =	{9:1--9:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-049-1},
  ISSN =	{1868-8969},
  year =	{2017},
  volume =	{87},
  editor =	{Pruhs, Kirk and Sohler, Christian},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2017.9},
  URN =		{urn:nbn:de:0030-drops-78542},
  doi =		{10.4230/LIPIcs.ESA.2017.9},
  annote =	{Keywords: shared memory, parallel sorting, in-place algorithm, comparison-based sorting, branch prediction}
}

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1 Mathematics of computing → Combinatorial optimization
1 Mathematics of computing → Solvers
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1 Burrows-Wheeler Transform
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