23 Search Results for "Wellnitz, Philip"

Document
DOI: 10.4230/LIPIcs.STACS.2026.26
Approximate Cartesian Tree Matching with Substitutions

Authors: Panagiotis Charalampopoulos, Jonas Ellert, and Manal Mohamed

Published in: LIPIcs, Volume 364, 43rd International Symposium on Theoretical Aspects of Computer Science (STACS 2026)

Abstract
The Cartesian tree of a sequence captures the relative order of the sequence’s elements. In recent years, Cartesian tree matching has attracted considerable attention, particularly due to its applications in time series analysis. Consider a text T of length n and a pattern P of length m. In the exact Cartesian tree matching problem, the task is to find all length-m fragments of T whose Cartesian tree coincides with the Cartesian tree CT(P) of the pattern. Although the exact version of the problem can be solved in linear time [Park et al., TCS 2020], it remains rather restrictive; for example, it is not robust to outliers in the pattern. To overcome this limitation, we consider the approximate setting, where the goal is to identify all fragments of T that are close to some string whose Cartesian tree matches CT(P). In this work, we quantify closeness via the widely used Hamming distance metric. For a given integer parameter k > 0, we present an algorithm that computes all fragments of T that are at Hamming distance at most k from a string whose Cartesian tree matches CT(P). Our algorithm runs in time 𝒪(n √m ⋅ k^{2.5}) for k ≤ m^{1/5} and in time 𝒪(nk⁵) for k ≥ m^{1/5}, thereby improving upon the state-of-the-art 𝒪(nmk)-time algorithm of Kim and Han [TCS 2025] in the regime k = o(m^{1/4}). On the way to our solution, we develop a toolbox of independent interest. First, we introduce a new notion of periodicity in Cartesian trees. Then, we lift multiple well-known combinatorial and algorithmic results for string matching and periodicity in strings to Cartesian tree matching and periodicity in Cartesian trees.
Cite as

Panagiotis Charalampopoulos, Jonas Ellert, and Manal Mohamed. Approximate Cartesian Tree Matching with Substitutions. In 43rd International Symposium on Theoretical Aspects of Computer Science (STACS 2026). Leibniz International Proceedings in Informatics (LIPIcs), Volume 364, pp. 26:1-26:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2026)

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@InProceedings{charalampopoulos_et_al:LIPIcs.STACS.2026.26,
  author =	{Charalampopoulos, Panagiotis and Ellert, Jonas and Mohamed, Manal},
  title =	{{Approximate Cartesian Tree Matching with Substitutions}},
  booktitle =	{43rd International Symposium on Theoretical Aspects of Computer Science (STACS 2026)},
  pages =	{26:1--26:21},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-412-3},
  ISSN =	{1868-8969},
  year =	{2026},
  volume =	{364},
  editor =	{Mahajan, Meena and Manea, Florin and McIver, Annabelle and Thắng, Nguy\~{ê}n Kim},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.STACS.2026.26},
  URN =		{urn:nbn:de:0030-drops-255151},
  doi =		{10.4230/LIPIcs.STACS.2026.26},
  annote =	{Keywords: Cartesian tree, Hamming distance, approximate pattern matching}
}
Document
DOI: 10.4230/LIPIcs.ISAAC.2025.36
Streaming Periodicity with Mismatches, Wildcards, and Edits

Authors: Taha El Ghazi and Tatiana Starikovskaya

Published in: LIPIcs, Volume 359, 36th International Symposium on Algorithms and Computation (ISAAC 2025)

Abstract
In this work, we study the problem of detecting periodic trends in strings. While detecting exact periodicity has been studied extensively, real-world data is often noisy, where small deviations or mismatches occur between repetitions. This work focuses on a generalized approach to period detection that efficiently handles noise. Given a string S of length n, the task is to identify integers p such that the prefix and the suffix of S, each of length n-p+1, are similar under a given distance measure. Ergün et al. [APPROX-RANDOM 2017] were the first to study this problem in the streaming model under the Hamming distance. In this work, we combine, in a non-trivial way, the Hamming distance sketch of Clifford et al. [SODA 2019] and the structural description of the k-mismatch occurrences of a pattern in a text by Charalampopoulos et al. [FOCS 2020] to present a more efficient streaming algorithm for period detection under the Hamming distance. As a corollary, we derive a streaming algorithm for detecting periods of strings which may contain wildcards, a special symbol that match any character of the alphabet. Our algorithm is not only more efficient than that of Ergün et al. [TCS 2020], but it also operates without their assumption that the string must be free of wildcards in its final characters. Additionally, we introduce the first two-pass streaming algorithm for computing periods under the edit distance by leveraging and extending the Bhattacharya-Koucký’s grammar decomposition technique [STOC 2023].
Cite as

Taha El Ghazi and Tatiana Starikovskaya. Streaming Periodicity with Mismatches, Wildcards, and Edits. In 36th International Symposium on Algorithms and Computation (ISAAC 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 359, pp. 36:1-36:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{elghazi_et_al:LIPIcs.ISAAC.2025.36,
  author =	{El Ghazi, Taha and Starikovskaya, Tatiana},
  title =	{{Streaming Periodicity with Mismatches, Wildcards, and Edits}},
  booktitle =	{36th International Symposium on Algorithms and Computation (ISAAC 2025)},
  pages =	{36:1--36:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-408-6},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{359},
  editor =	{Chen, Ho-Lin and Hon, Wing-Kai and Tsai, Meng-Tsung},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ISAAC.2025.36},
  URN =		{urn:nbn:de:0030-drops-249446},
  doi =		{10.4230/LIPIcs.ISAAC.2025.36},
  annote =	{Keywords: approximate periods, pattern matching, streaming algorithms}
}
Document
DOI: 10.4230/LIPIcs.ESA.2025.3
Generalized Graph Packing Problems Parameterized by Treewidth

Authors: Barış Can Esmer and Dániel Marx

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)

Abstract
H-Packing is the problem of finding a maximum number of vertex-disjoint copies of H in a given graph G. H-Partition is the special case of finding a set of vertex-disjoint copies that cover each vertex of G exactly once. Our goal is to study these problems and some generalizations on bounded-treewidth graphs. The case of H being a triangle is well understood: given a tree decomposition of G having treewidth tw, the K₃-Packing problem can be solved in time 2^tw⋅ n^O(1), while Lokshtanov et al. [ACM Transactions on Algorithms 2018] showed, under the Strong Exponential-Time Hypothesis (SETH), that there is no (2-ε)^tw⋅ n^O(1) algorithm for any ε > 0 even for K₃-Partition. Similar results can be obtained for any other clique K_d for d ≥ 3. We provide generalizations in two directions: - We consider a generalization of the problem where every vertex can be used at most c times for some c ≥ 1. When H is any clique K_d with d ≥ 3, then we give upper and lower bounds showing that the optimal running time increases to (c+1)^tw⋅ n^O(1). We consider two variants depending on whether a copy of H can be used multiple times in the packing. - If H is not a clique, then the dependence of the running time on treewidth may not be even single exponential. Specifically, we show that if H is any fixed graph where not every 2-connected component is a clique, then there is no 2^o(tw log tw)⋅ n^O(1) algorithm for H-Partition, assuming the Exponential-Time Hypothesis (ETH).
Cite as

Barış Can Esmer and Dániel Marx. Generalized Graph Packing Problems Parameterized by Treewidth. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 3:1-3:15, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{canesmer_et_al:LIPIcs.ESA.2025.3,
  author =	{Can Esmer, Bar{\i}\c{s} and Marx, D\'{a}niel},
  title =	{{Generalized Graph Packing Problems Parameterized by Treewidth}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{3:1--3:15},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.3},
  URN =		{urn:nbn:de:0030-drops-244713},
  doi =		{10.4230/LIPIcs.ESA.2025.3},
  annote =	{Keywords: Graph Packing, Graph Partitioning, Parameterized Complexity, Treewidth, Pathwidth, pw-SETH, Single-Exponential Lower Bound, Slightly Superexponential Lower Bound}
}
Document
DOI: 10.4230/LIPIcs.ESA.2025.94
Faster Algorithm for Bounded Tree Edit Distance in the Low-Distance Regime

Authors: Tomasz Kociumaka and Ali Shahali

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)

Abstract
The tree edit distance is a natural dissimilarity measure between rooted ordered trees whose nodes are labeled over an alphabet Σ. It is defined as the minimum number of node edits - insertions, deletions, and relabelings - required to transform one tree into the other. The weighted variant assigns costs ≥ 1 to edits (based on node labels), minimizing total cost rather than edit count. The unweighted tree edit distance between two trees of total size n can be computed in 𝒪(n^{2.6857}) time; in contrast, determining the weighted tree edit distance is fine-grained equivalent to the All-Pairs Shortest Paths (APSP) problem and requires n³/2^Ω(√{log n}) time [Nogler, Polak, Saha, Vassilevska Williams, Xu, Ye; STOC'25]. These impractical super-quadratic times for large, similar trees motivate the bounded version, parameterizing runtime by the distance k to enable faster algorithms for k ≪ n. Prior algorithms for bounded unweighted edit distance achieve 𝒪(nk²log n) [Akmal & Jin; ICALP’21] and 𝒪(n + k⁷log k) [Das, Gilbert, Hajiaghayi, Kociumaka, Saha; STOC'23]. For weighted, only 𝒪(n + k^{15}) is known [Das, Gilbert, Hajiaghayi, Kociumaka, Saha; STOC'23]. We present an 𝒪(n + k⁶ log k)-time algorithm for bounded tree edit distance in both weighted/unweighted settings. First, we devise a simpler weighted 𝒪(nk² log n)-time algorithm. Next, we exploit periodic structures in input trees via an optimized universal kernel: modifying prior 𝒪(n)-time 𝒪(k⁵)-size kernels to generate such structured instances, enabling efficient analysis.
Cite as

Tomasz Kociumaka and Ali Shahali. Faster Algorithm for Bounded Tree Edit Distance in the Low-Distance Regime. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 94:1-94:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{kociumaka_et_al:LIPIcs.ESA.2025.94,
  author =	{Kociumaka, Tomasz and Shahali, Ali},
  title =	{{Faster Algorithm for Bounded Tree Edit Distance in the Low-Distance Regime}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{94:1--94:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.94},
  URN =		{urn:nbn:de:0030-drops-245634},
  doi =		{10.4230/LIPIcs.ESA.2025.94},
  annote =	{Keywords: tree edit distance, edit distance, kernelization, dynamic programming}
}
Document
DOI: 10.4230/LIPIcs.ESA.2025.96
Counting Small Induced Subgraphs: Scorpions Are Easy but Not Trivial

Authors: Radu Curticapean, Simon Döring, and Daniel Neuen

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)

Abstract
In the parameterized problem #IndSub(Φ) for fixed graph properties Φ, given as input a graph G and an integer k, the task is to compute the number of induced k-vertex subgraphs satisfying Φ. Dörfler et al. [Algorithmica 2022] and Roth et al. [SICOMP 2024] conjectured that #IndSub(Φ) is #W[1]-hard for all non-meager properties Φ, i.e., properties that are nontrivial for infinitely many k. This conjecture has been confirmed for several restricted types of properties, including all hereditary properties [STOC 2022] and all edge-monotone properties [STOC 2024]. We refute this conjecture by showing that induced k-vertex graphs that are scorpions can be counted in time O(n⁴) for all k. Scorpions were introduced more than 50 years ago in the context of the evasiveness conjecture. A simple variant of this construction results in graph properties that achieve arbitrary intermediate complexity assuming ETH. Moreover, we formulate an updated conjecture on the complexity of #IndSub(Φ) that correctly captures the complexity status of scorpions and related constructions.
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Radu Curticapean, Simon Döring, and Daniel Neuen. Counting Small Induced Subgraphs: Scorpions Are Easy but Not Trivial. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 96:1-96:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{curticapean_et_al:LIPIcs.ESA.2025.96,
  author =	{Curticapean, Radu and D\"{o}ring, Simon and Neuen, Daniel},
  title =	{{Counting Small Induced Subgraphs: Scorpions Are Easy but Not Trivial}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{96:1--96:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.96},
  URN =		{urn:nbn:de:0030-drops-245651},
  doi =		{10.4230/LIPIcs.ESA.2025.96},
  annote =	{Keywords: induced subgraphs, counting complexity, parameterized complexity, scorpions}
}
Document
DOI: 10.4230/LIPIcs.ESA.2025.74
Core-Sparse Monge Matrix Multiplication: Improved Algorithm and Applications

Authors: Paweł Gawrychowski, Egor Gorbachev, and Tomasz Kociumaka

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)

Abstract
Min-plus matrix multiplication is a fundamental tool for designing algorithms operating on distances in graphs and different problems solvable by dynamic programming. We know that, assuming the APSP hypothesis, no subcubic-time algorithm exists for the case of general matrices. However, in many applications the matrices admit certain structural properties that can be used to design faster algorithms. For example, when considering a planar graph, one often works with a Monge matrix A, meaning that the density matrix A^◻ has non-negative entries, that is, A^◻_{i,j} := A_{i+1,j} + A_{i,j+1} - A_{i,j} -A_{i+1,j+1} ≥ 0. The min-plus product of two n×n Monge matrices can be computed in 𝒪(n²) time using the famous SMAWK algorithm. In applications such as longest common subsequence, edit distance, and longest increasing subsequence, the matrices are even more structured, as observed by Tiskin [J. Discrete Algorithms, 2008]: they are (or can be converted to) simple unit-Monge matrices, meaning that the density matrix is a permutation matrix and, furthermore, the first column and the last row of the matrix consist of only zeroes. Such matrices admit an implicit representation of size 𝒪(n) and, as shown by Tiskin [SODA 2010 & Algorithmica, 2015], their min-plus product can be computed in 𝒪(nlog n) time. Russo [SPIRE 2010 & Theor. Comput. Sci., 2012] identified a general structural property of matrices that admit such efficient representation and min-plus multiplication algorithms: the core size δ, defined as the number of non-zero entries in the density matrices of the input and output matrices. He provided an adaptive implementation of the SMAWK algorithm that runs in 𝒪((n+δ)log³ n) or 𝒪((n+δ)log² n) time (depending on the representation of the input matrices). In this work, we further investigate the core size as the parameter that enables efficient min-plus matrix multiplication. On the combinatorial side, we provide a (linear) bound on the core size of the product matrix in terms of the core sizes of the input matrices. On the algorithmic side, we generalize Tiskin’s algorithm (but, arguably, with a more elementary analysis) to solve the core-sparse Monge matrix multiplication problem in 𝒪(n+δlog δ) ⊆ 𝒪(n + δ log n) time, matching the complexity for simple unit-Monge matrices. As witnessed by the recent work of Gorbachev and Kociumaka [STOC'25] for edit distance with integer weights, our generalization opens up the possibility of speed-ups for weighted sequence alignment problems. Furthermore, our multiplication algorithm is also capable of producing an efficient data structure for recovering the witness for any given entry of the output matrix. This allows us, for example, to preprocess an integer array of size n in Õ(n) time so that the longest increasing subsequence of any sub-array can be reconstructed in Õ(𝓁) time, where 𝓁 is the length of the reported subsequence. In comparison, Karthik C. S. and Rahul [arXiv, 2024] recently achieved 𝒪(𝓁+n^{1/2}polylog n)-time reporting after 𝒪(n^{3/2}polylog n)-time preprocessing.
Cite as

Paweł Gawrychowski, Egor Gorbachev, and Tomasz Kociumaka. Core-Sparse Monge Matrix Multiplication: Improved Algorithm and Applications. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 74:1-74:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{gawrychowski_et_al:LIPIcs.ESA.2025.74,
  author =	{Gawrychowski, Pawe{\l} and Gorbachev, Egor and Kociumaka, Tomasz},
  title =	{{Core-Sparse Monge Matrix Multiplication: Improved Algorithm and Applications}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{74:1--74:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.74},
  URN =		{urn:nbn:de:0030-drops-245427},
  doi =		{10.4230/LIPIcs.ESA.2025.74},
  annote =	{Keywords: Min-plus matrix multiplication, Monge matrix, longest increasing subsequence}
}
Document
DOI: 10.4230/LIPIcs.ESA.2025.13
Tight Bounds for Some Classical Problems Parameterized by Cutwidth

Authors: Narek Bojikian, Vera Chekan, and Stefan Kratsch

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)

Abstract
Cutwidth is a widely studied parameter and it quantifies how well a graph can be decomposed along small edge-cuts. It complements pathwidth, which captures decomposition by small vertex separators, and it is well-known that cutwidth upper-bounds pathwidth. The SETH-tight parameterized complexity of problems on graphs of bounded pathwidth (and treewidth) has been actively studied over the past decade while for cutwidth the complexity of many classical problems remained open. For Hamiltonian Cycle, it is known that a (2+√2)^{pw} n^𝒪(1) algorithm is optimal for pathwidth under SETH [Cygan et al. JACM 2018]. Van Geffen et al. [J. Graph Algorithms Appl. 2020] and Bojikian et al. [STACS 2023] asked which running time is optimal for this problem parameterized by cutwidth. We answer this question with (1+√2)^{ctw} n^𝒪(1) by providing matching upper and lower bounds. Second, as our main technical contribution, we close the gap left by van Heck [2018] for Partition Into Triangles (and Triangle Packing) by improving both upper and lower bound and getting a tight bound of ∛{3}^{ctw} n^𝒪(1), which to our knowledge exhibits the only known tight non-integral basis apart from Hamiltonian Cycle [Cygan et al. JACM 2018] and C₄-Hitting Set [SODA 2025]. We show that the cuts inducing a disjoint union of paths of length three (unions of so-called Z-cuts) lie at the core of the complexity of the problem - usually lower-bound constructions use simpler cuts inducing either a matching or a disjoint union of bicliques. Finally, we determine the optimal running times for Max Cut (2^{ctw} n^𝒪(1)) and Induced Matching (3^{ctw} n^𝒪(1)) by providing matching lower bounds for the existing algorithms - the latter result also answers an open question for treewidth by Chaudhary and Zehavi [WG 2023].
Cite as

Narek Bojikian, Vera Chekan, and Stefan Kratsch. Tight Bounds for Some Classical Problems Parameterized by Cutwidth. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 13:1-13:17, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{bojikian_et_al:LIPIcs.ESA.2025.13,
  author =	{Bojikian, Narek and Chekan, Vera and Kratsch, Stefan},
  title =	{{Tight Bounds for Some Classical Problems Parameterized by Cutwidth}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{13:1--13:17},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.13},
  URN =		{urn:nbn:de:0030-drops-244815},
  doi =		{10.4230/LIPIcs.ESA.2025.13},
  annote =	{Keywords: Parameterized complexity, cutwidth, Hamiltonian cycle, triangle packing, max cut, induced matching}
}
Document
DOI: 10.4230/LIPIcs.ESA.2025.45
Bounded Weighted Edit Distance: Dynamic Algorithms and Matching Lower Bounds

Authors: Itai Boneh, Egor Gorbachev, and Tomasz Kociumaka

Published in: LIPIcs, Volume 351, 33rd Annual European Symposium on Algorithms (ESA 2025)

Abstract
The edit distance ed(X,Y) of two strings X,Y ∈ Σ^* is the minimum number of character edits (insertions, deletions, and substitutions) needed to transform X into Y. Its weighted counterpart ed^w(X,Y) minimizes the total cost of edits, where the costs of individual edits, depending on the edit type and the characters involved, are specified using a function w, normalized so that each edit costs at least one. The textbook dynamic-programming procedure, given strings X,Y ∈ Σ^{≤ n} and oracle access to w, computes ed^w(X,Y) in 𝒪(n²) time. Nevertheless, one can achieve better running times if the computed distance, denoted k, is small: 𝒪(n+k²) for unit weights [Landau and Vishkin; JCSS'88] and Õ(n+√{nk³}) for arbitrary weights [Cassis, Kociumaka, Wellnitz; FOCS'23]. In this paper, we study the dynamic version of the weighted edit distance problem, where the goal is to maintain ed^w(X,Y) for strings X,Y ∈ Σ^{≤ n} that change over time, with each update specified as an edit in X or Y. Very recently, Gorbachev and Kociumaka [STOC'25] showed that the unweighted distance ed(X,Y) can be maintained in Õ(k) time per update after Õ(n+k²)-time preprocessing; here, k denotes the current value of ed(X,Y). Their algorithm generalizes to small integer weights, but the underlying approach is incompatible with large weights. Our main result is a dynamic algorithm that maintains ed^w(X,Y) in Õ(k^{3-γ}) time per update after Õ(nk^γ)-time preprocessing. Here, γ ∈ [0,1] is a real trade-off parameter and k ≥ 1 is an integer threshold fixed at preprocessing time, with ∞ returned whenever ed^w(X,Y) > k. We complement our algorithm with conditional lower bounds showing fine-grained optimality of our trade-off for γ ∈ [0.5,1) and justifying our choice to fix k. We also generalize our solution to a much more robust setting while preserving the fine-grained optimal trade-off. Our full algorithm maintains X ∈ Σ^{≤ n} subject not only to character edits but also substring deletions and copy-pastes, each supported in Õ(k²) time. Instead of dynamically maintaining Y, it answers queries that, given any string Y specified through a sequence of 𝒪(k) arbitrary edits transforming X into Y, in Õ(k^{3-γ}) time compute ed^w(X,Y) or report that ed^w(X,Y) > k.
Cite as

Itai Boneh, Egor Gorbachev, and Tomasz Kociumaka. Bounded Weighted Edit Distance: Dynamic Algorithms and Matching Lower Bounds. In 33rd Annual European Symposium on Algorithms (ESA 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 351, pp. 45:1-45:16, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{boneh_et_al:LIPIcs.ESA.2025.45,
  author =	{Boneh, Itai and Gorbachev, Egor and Kociumaka, Tomasz},
  title =	{{Bounded Weighted Edit Distance: Dynamic Algorithms and Matching Lower Bounds}},
  booktitle =	{33rd Annual European Symposium on Algorithms (ESA 2025)},
  pages =	{45:1--45:16},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-395-9},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{351},
  editor =	{Benoit, Anne and Kaplan, Haim and Wild, Sebastian and Herman, Grzegorz},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ESA.2025.45},
  URN =		{urn:nbn:de:0030-drops-245139},
  doi =		{10.4230/LIPIcs.ESA.2025.45},
  annote =	{Keywords: Edit distance, dynamic algorithms, conditional lower bounds}
}
Document
DOI: 10.4230/LIPIcs.MFCS.2025.36
Counting Distinct Square Substrings in Sublinear Time

Authors: Panagiotis Charalampopoulos, Manal Mohamed, Jakub Radoszewski, Wojciech Rytter, Tomasz Waleń, and Wiktor Zuba

Published in: LIPIcs, Volume 345, 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)

Abstract
We show that the number of distinct squares in a packed string of length n over an alphabet of size σ can be computed in 𝒪(n/log_{σ}n) time in the word-RAM model of computation. This paper is the first to introduce a sublinear time algorithm for the packed version of squares counting. The packed representation of a string of length n over an alphabet of size σ is given as a sequence of 𝒪(n/ log_{σ} n) machine words in the word-RAM model (a machine word consists of ω ≥ log₂ n bits). Previously it was known how to count distinct squares in 𝒪(n) time [Gusfield and Stoye, JCSS 2004], even for a string over an integer alphabet, see [Crochemore et al., TCS 2014; Bannai et al., CPM 2017; Charalampopoulos et al., SPIRE 2020]. We use techniques of squares extraction from runs described by Crochemore et al. [TCS 2014]. However, the packed model requires novel approaches. In particular, we need an 𝒪(n/log_{σ}n) sized representation of all long-period runs (runs with periods that are Ω(log_{σ}n)) which guarantees sublinear time counting of potentially linearly-many implied squares. The long-period runs with a string period that is periodic itself (called layer runs) are an obstacle, since their number can be Ω(n). Fortunately, the number of all other long-period runs is 𝒪(n/log_{σ}n) and we can construct an implicit representation of all long-period runs in 𝒪(n/log_{σ}n) time by adopting the insights of Amir et al. [ESA 2019], combined with sublinear time tools provided by the PILLAR model of computations in case of packed strings. We count squares in layer runs in sublinear time by exploiting combinatorial properties of types of pyramidally-shaped groups of layer runs. As a by-product, we discover several new structural properties of runs. Another difficulty is to compute, in sublinear time, locations of Lyndon roots of runs in packed strings, which is needed for grouping of runs that can generate equal squares. To overcome this difficulty, we introduce sparse-Lyndon roots which are based on the notion of string synchronizers proposed by Kempa and Kociumaka [STOC 2019].
Cite as

Panagiotis Charalampopoulos, Manal Mohamed, Jakub Radoszewski, Wojciech Rytter, Tomasz Waleń, and Wiktor Zuba. Counting Distinct Square Substrings in Sublinear Time. In 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 345, pp. 36:1-36:19, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{charalampopoulos_et_al:LIPIcs.MFCS.2025.36,
  author =	{Charalampopoulos, Panagiotis and Mohamed, Manal and Radoszewski, Jakub and Rytter, Wojciech and Wale\'{n}, Tomasz and Zuba, Wiktor},
  title =	{{Counting Distinct Square Substrings in Sublinear Time}},
  booktitle =	{50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)},
  pages =	{36:1--36:19},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-388-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{345},
  editor =	{Gawrychowski, Pawe{\l} and Mazowiecki, Filip and Skrzypczak, Micha{\l}},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2025.36},
  URN =		{urn:nbn:de:0030-drops-241439},
  doi =		{10.4230/LIPIcs.MFCS.2025.36},
  annote =	{Keywords: square in a string, packed model, run (maximal repetition), Lyndon word}
}
Document
DOI: 10.4230/LIPIcs.MFCS.2025.23
Which Graph Motif Parameters Count?

Authors: Markus Bläser, Radu Curticapean, Julian Dörfler, and Christian Ikenmeyer

Published in: LIPIcs, Volume 345, 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)

Abstract
For a fixed graph H, the function #Ind(H → ⋆) maps graphs G to the count of induced H-copies in G; this function obviously "counts something" in that it has a combinatorial interpretation. Linear combinations of such functions are called graph motif parameters and have recently received significant attention in counting complexity after a seminal paper by Curticapean, Dell and Marx (STOC'17). We show that, among linear combinations of functions #Ind(H → ⋆) involving only graphs H without isolated vertices, precisely those with positive integer coefficients maintain a combinatorial interpretation. It is important to note that graph motif parameters can be nonnegative for all inputs G, even when some coefficients are negative. Formally, we show that evaluating any graph motif parameter with a negative coefficient is impossible in an oracle variant of #P, where an implicit graph is accessed by oracle queries. Our proof follows the classification of the relativizing closure properties of #P by Hertrampf, Vollmer, and Wagner (SCT'95) and the framework developed by Ikenmeyer and Pak (STOC'22), but our application of the required Ramsey theorem turns out to be more subtle, as graphs do not have the required Ramsey property. Our techniques generalize from graphs to relational structures, including colored graphs. Vastly generalizing this, we introduce motif parameters over categories that count occurrences of sub-objects in the category. We then prove a general dichotomy theorem that characterizes which such parameters have a combinatorial interpretation. Using known results in Ramsey theory for categories, we obtain a dichotomy for motif parameters of finite vector spaces as well as parameter sets.
Cite as

Markus Bläser, Radu Curticapean, Julian Dörfler, and Christian Ikenmeyer. Which Graph Motif Parameters Count?. In 50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 345, pp. 23:1-23:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{blaser_et_al:LIPIcs.MFCS.2025.23,
  author =	{Bl\"{a}ser, Markus and Curticapean, Radu and D\"{o}rfler, Julian and Ikenmeyer, Christian},
  title =	{{Which Graph Motif Parameters Count?}},
  booktitle =	{50th International Symposium on Mathematical Foundations of Computer Science (MFCS 2025)},
  pages =	{23:1--23:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-388-1},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{345},
  editor =	{Gawrychowski, Pawe{\l} and Mazowiecki, Filip and Skrzypczak, Micha{\l}},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.MFCS.2025.23},
  URN =		{urn:nbn:de:0030-drops-241307},
  doi =		{10.4230/LIPIcs.MFCS.2025.23},
  annote =	{Keywords: Graph motif parameters, Combinatorics, Combinatorial Interpretability}
}
Document
Track A: Algorithms, Complexity and Games
DOI: 10.4230/LIPIcs.ICALP.2025.78
The Role of Regularity in (Hyper-)Clique Detection and Implications for Optimizing Boolean CSPs

Authors: Nick Fischer, Marvin Künnemann, Mirza Redžić, and Julian Stieß

Published in: LIPIcs, Volume 334, 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)

Abstract
Is detecting a k-clique in k-partite regular (hyper-)graphs as hard as in the general case? Intuition suggests yes, but proving this - especially for hypergraphs - poses notable challenges. Concretely, we consider a strong notion of regularity in h-uniform hypergraphs, where we essentially require that any subset of at most h-1 is incident to a uniform number of hyperedges. Such notions are studied intensively in the combinatorial block design literature. We show that any f(k)n^{g(k)}-time algorithm for detecting k-cliques in such graphs transfers to an f'(k)n^{g(k)}-time algorithm for the general case, establishing a fine-grained equivalence between the h-uniform hyperclique hypothesis and its natural regular analogue. Equipped with this regularization result, we then fully resolve the fine-grained complexity of optimizing Boolean constraint satisfaction problems over assignments with k non-zeros. Our characterization depends on the maximum degree d of a constraint function. Specifically, if d ≤ 1, we obtain a linear-time solvable problem, if d = 2, the time complexity is essentially equivalent to k-clique detection, and if d ≥ 3 the problem requires exhaustive-search time under the 3-uniform hyperclique hypothesis. To obtain our hardness results, the regularization result plays a crucial role, enabling a very convenient approach when applied carefully. We believe that our regularization result will find further applications in the future.
Cite as

Nick Fischer, Marvin Künnemann, Mirza Redžić, and Julian Stieß. The Role of Regularity in (Hyper-)Clique Detection and Implications for Optimizing Boolean CSPs. In 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 334, pp. 78:1-78:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{fischer_et_al:LIPIcs.ICALP.2025.78,
  author =	{Fischer, Nick and K\"{u}nnemann, Marvin and Red\v{z}i\'{c}, Mirza and Stie{\ss}, Julian},
  title =	{{The Role of Regularity in (Hyper-)Clique Detection and Implications for Optimizing Boolean CSPs}},
  booktitle =	{52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)},
  pages =	{78:1--78:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-372-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{334},
  editor =	{Censor-Hillel, Keren and Grandoni, Fabrizio and Ouaknine, Jo\"{e}l and Puppis, Gabriele},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2025.78},
  URN =		{urn:nbn:de:0030-drops-234559},
  doi =		{10.4230/LIPIcs.ICALP.2025.78},
  annote =	{Keywords: fine-grained complexity theory, clique detections in hypergraphs, constraint satisfaction, parameterized algorithms}
}
Document
Track A: Algorithms, Complexity and Games
DOI: 10.4230/LIPIcs.ICALP.2025.7
Parameterised Holant Problems

Authors: Panagiotis Aivasiliotis, Andreas Göbel, Marc Roth, and Johannes Schmitt

Published in: LIPIcs, Volume 334, 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)

Abstract
We investigate the complexity of parameterised holant problems p-Holant(𝒮) for families of symmetric signatures 𝒮. The parameterised holant framework has been introduced by Curticapean in 2015 as a counter-part to the classical and well-established theory of holographic reductions and algorithms, and it constitutes an extensive family of coloured and weighted counting constraint satisfaction problems on graph-like structures, encoding as special cases various well-studied counting problems in parameterised and fine-grained complexity theory such as counting edge-colourful k-matchings, graph-factors, Eulerian orientations or, more generally, subgraphs with weighted degree constraints. We establish an exhaustive complexity trichotomy along the set of signatures 𝒮: Depending on the signatures, p-Holant(𝒮) is either 1) solvable in "FPT-near-linear time", i.e., in time f(k)⋅ 𝒪̃(|x|), or 2) solvable in "FPT-matrix-multiplication time", i.e., in time f(k)⋅ {𝒪}(n^{ω}), where n is the number of vertices of the underlying graph, but not solvable in FPT-near-linear time, unless the Triangle Conjecture fails, or 3) #W[1]-complete and no significant improvement over the naive brute force algorithm is possible unless the Exponential Time Hypothesis fails. This classification reveals a significant and surprising gap in the complexity landscape of parameterised Holants: Not only is every instance either fixed-parameter tractable or #W[1]-complete, but additionally, every FPT instance is solvable in time (at most) f(k)⋅ {𝒪}(n^{ω}). We show that there are infinitely many instances of each of the types; for example, all constant signatures yield holant problems of type (1), and the problem of counting edge-colourful k-matchings modulo p is of type (p) for p ∈ {2,3}. Finally, we also establish a complete classification for a natural uncoloured version of parameterised holant problem p-UnColHolant(𝒮), which encodes as special cases the non-coloured analogues of the aforementioned examples. We show that the complexity of p-UnColHolant(𝒮) is different: Depending on 𝒮 all instances are either solvable in FPT-near-linear time, or #W[1]-complete, that is, there are no instances of type (2).
Cite as

Panagiotis Aivasiliotis, Andreas Göbel, Marc Roth, and Johannes Schmitt. Parameterised Holant Problems. In 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 334, pp. 7:1-7:14, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{aivasiliotis_et_al:LIPIcs.ICALP.2025.7,
  author =	{Aivasiliotis, Panagiotis and G\"{o}bel, Andreas and Roth, Marc and Schmitt, Johannes},
  title =	{{Parameterised Holant Problems}},
  booktitle =	{52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)},
  pages =	{7:1--7:14},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-372-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{334},
  editor =	{Censor-Hillel, Keren and Grandoni, Fabrizio and Ouaknine, Jo\"{e}l and Puppis, Gabriele},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2025.7},
  URN =		{urn:nbn:de:0030-drops-233842},
  doi =		{10.4230/LIPIcs.ICALP.2025.7},
  annote =	{Keywords: holant problems, counting problems, parameterised algorithms, fine-grained complexity theory, homomorphisms}
}
Document
Track A: Algorithms, Complexity and Games
DOI: 10.4230/LIPIcs.ICALP.2025.124
Subgraph Counting in Subquadratic Time for Bounded Degeneracy Graphs

Authors: Daniel Paul-Pena and C. Seshadhri

Published in: LIPIcs, Volume 334, 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)

Abstract
We study the classic problem of subgraph counting, where we wish to determine the number of occurrences of a fixed pattern graph H in an input graph G of n vertices. Our focus is on bounded degeneracy inputs, a rich family of graph classes that also characterizes real-world massive networks. Building on the seminal techniques introduced by Chiba-Nishizeki (SICOMP 1985), a recent line of work has built subgraph counting algorithms for bounded degeneracy graphs. Assuming fine-grained complexity conjectures, there is a complete characterization of patterns H for which linear time subgraph counting is possible. For every r ≥ 6, there exists an H with r vertices that cannot be counted in linear time. In this paper, we initiate a study of subquadratic algorithms for subgraph counting on bounded degeneracy graphs. We prove that when H has at most 9 vertices, subgraph counting can be done in Õ(n^{5/3}) time. As a secondary result, we give improved algorithms for counting cycles of length at most 10. Previously, no subquadratic algorithms were known for the above problems on bounded degeneracy graphs. Our main conceptual contribution is a framework that reduces subgraph counting in bounded degeneracy graphs to counting smaller hypergraphs in arbitrary graphs. We believe that our results will help build a general theory of subgraph counting for bounded degeneracy graphs.
Cite as

Daniel Paul-Pena and C. Seshadhri. Subgraph Counting in Subquadratic Time for Bounded Degeneracy Graphs. In 52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 334, pp. 124:1-124:18, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{paulpena_et_al:LIPIcs.ICALP.2025.124,
  author =	{Paul-Pena, Daniel and Seshadhri, C.},
  title =	{{Subgraph Counting in Subquadratic Time for Bounded Degeneracy Graphs}},
  booktitle =	{52nd International Colloquium on Automata, Languages, and Programming (ICALP 2025)},
  pages =	{124:1--124:18},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-372-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{334},
  editor =	{Censor-Hillel, Keren and Grandoni, Fabrizio and Ouaknine, Jo\"{e}l and Puppis, Gabriele},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.ICALP.2025.124},
  URN =		{urn:nbn:de:0030-drops-235010},
  doi =		{10.4230/LIPIcs.ICALP.2025.124},
  annote =	{Keywords: Homomorphism counting, Bounded degeneracy graphs, Fine-grained complexity, Subgraph counting}
}
Document
DOI: 10.4230/LIPIcs.CPM.2025.29
Faster Approximate Elastic-Degenerate String Matching - Part B

Authors: Paweł Gawrychowski, Adam Górkiewicz, Pola Marciniak, Solon P. Pissis, and Karol Pokorski

Published in: LIPIcs, Volume 331, 36th Annual Symposium on Combinatorial Pattern Matching (CPM 2025)

Abstract
We revisit the complexity of approximate pattern matching in an elastic-degenerate string. Such a string is a sequence of n finite sets of strings of total length N, and compactly describes a collection of strings obtained by first choosing exactly one string in every set, and then concatenating them together. This is motivated by the need of storing a collection of highly similar DNA sequences. The basic algorithmic question on elastic-degenerate strings is pattern matching: given such an elastic-degenerate string and a standard pattern of length m, check if the pattern occurs in one of the strings in the described collection. Bernardini et al. [SICOMP 2022] showed how to leverage fast matrix multiplication to obtain an Õ(nm^{ω-1})+𝒪(N)-time complexity for this problem, where ω is the matrix multiplication exponent. However, from the point of view of possible applications, it is more desirable to work with approximate pattern matching, where we seek approximate occurrences of the pattern. This generalization has been considered in a few papers already, but the best result so far for occurrences with k mismatches, where k is a constant, is the Õ(nm²+N)-time algorithm presented in Part A [CPM 2025]. This brings the question whether increasing the dependency on m from m^{ω-1} to quadratic is necessary when moving from k = 0 to larger (but still constant) k. We design an Õ(nm^{1.5}+N)-time algorithm for pattern matching with k mismatches in an elastic-degenerate string, for any constant k. To obtain this time bound, we leverage the structural characterization of occurrences with k mismatches of Charalampopoulos, Kociumaka, and Wellnitz [FOCS 2020] together with fast Fourier transform. We need to work with multiple patterns at the same time, instead of a single pattern, which requires refining the original characterization. This might be of independent interest.
Cite as

Paweł Gawrychowski, Adam Górkiewicz, Pola Marciniak, Solon P. Pissis, and Karol Pokorski. Faster Approximate Elastic-Degenerate String Matching - Part B. In 36th Annual Symposium on Combinatorial Pattern Matching (CPM 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 331, pp. 29:1-29:21, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{gawrychowski_et_al:LIPIcs.CPM.2025.29,
  author =	{Gawrychowski, Pawe{\l} and G\'{o}rkiewicz, Adam and Marciniak, Pola and Pissis, Solon P. and Pokorski, Karol},
  title =	{{Faster Approximate Elastic-Degenerate String Matching - Part B}},
  booktitle =	{36th Annual Symposium on Combinatorial Pattern Matching (CPM 2025)},
  pages =	{29:1--29:21},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-369-0},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{331},
  editor =	{Bonizzoni, Paola and M\"{a}kinen, Veli},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.CPM.2025.29},
  URN =		{urn:nbn:de:0030-drops-231236},
  doi =		{10.4230/LIPIcs.CPM.2025.29},
  annote =	{Keywords: ED string, approximate pattern matching, Hamming distance, k mismatches}
}
Document
DOI: 10.4230/LIPIcs.STACS.2025.41
Residue Domination in Bounded-Treewidth Graphs

Authors: Jakob Greilhuber, Philipp Schepper, and Philip Wellnitz

Published in: LIPIcs, Volume 327, 42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025)

Abstract
For the vertex selection problem (σ,ρ)-DomSet one is given two fixed sets σ and ρ of integers and the task is to decide whether we can select vertices of the input graph such that, for every selected vertex, the number of selected neighbors is in σ and, for every unselected vertex, the number of selected neighbors is in ρ [Telle, Nord. J. Comp. 1994]. This framework covers many fundamental graph problems such as Independent Set and Dominating Set. We significantly extend the recent result by Focke et al. [SODA 2023] to investigate the case when σ and ρ are two (potentially different) residue classes modulo m ≥ 2. We study the problem parameterized by treewidth and present an algorithm that solves in time m^tw ⋅ n^O(1) the decision, minimization and maximization version of the problem. This significantly improves upon the known algorithms where for the case m ≥ 3 not even an explicit running time is known. We complement our algorithm by providing matching lower bounds which state that there is no (m-ε)^pw ⋅ n^O(1)-time algorithm parameterized by pathwidth pw, unless SETH fails. For m = 2, we extend these bounds to the minimization version as the decision version is efficiently solvable.
Cite as

Jakob Greilhuber, Philipp Schepper, and Philip Wellnitz. Residue Domination in Bounded-Treewidth Graphs. In 42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025). Leibniz International Proceedings in Informatics (LIPIcs), Volume 327, pp. 41:1-41:20, Schloss Dagstuhl – Leibniz-Zentrum für Informatik (2025)

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@InProceedings{greilhuber_et_al:LIPIcs.STACS.2025.41,
  author =	{Greilhuber, Jakob and Schepper, Philipp and Wellnitz, Philip},
  title =	{{Residue Domination in Bounded-Treewidth Graphs}},
  booktitle =	{42nd International Symposium on Theoretical Aspects of Computer Science (STACS 2025)},
  pages =	{41:1--41:20},
  series =	{Leibniz International Proceedings in Informatics (LIPIcs)},
  ISBN =	{978-3-95977-365-2},
  ISSN =	{1868-8969},
  year =	{2025},
  volume =	{327},
  editor =	{Beyersdorff, Olaf and Pilipczuk, Micha{\l} and Pimentel, Elaine and Thắng, Nguy\~{ê}n Kim},
  publisher =	{Schloss Dagstuhl -- Leibniz-Zentrum f{\"u}r Informatik},
  address =	{Dagstuhl, Germany},
  URL =		{https://drops.dagstuhl.de/entities/document/10.4230/LIPIcs.STACS.2025.41},
  URN =		{urn:nbn:de:0030-drops-228675},
  doi =		{10.4230/LIPIcs.STACS.2025.41},
  annote =	{Keywords: Parameterized Complexity, Treewidth, Generalized Dominating Set, Strong Exponential Time Hypothesis}
}
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